Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,463,915 C→A 14.3% Q436K (CAA→AAA)  gtrS → serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,463,9150CA14.3% 381.2 / 19.8 142Q436K (CAA→AAA) gtrSserotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage
Reads supporting (aligned to +/- strand):  ref base C (38/79);  new base A (18/7);  total (56/86)
Fisher's exact test for biased strand distribution p-value = 4.96e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 144 total aligned reads displayed.

TCTTTTTGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGCCCTGATTC  >  CP009273/2463767‑2464062
                                                                                                                                                    |                                                                                                                                                   
  tttttGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTTATTTATAAAataaataaaataaataaa                                                                                                                                                   >  2:471961/1‑149 (MQ=255)
    tttGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGa                                                                                                                                                 <  2:49052/149‑1 (MQ=255)
       cgAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACaa                                                                                                                                              <  2:2378444/148‑1 (MQ=255)
        gAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTTATTTATAAAATAATTAAAATAAAAAAAAACaaa                                                                                                                                             >  1:3647588/1‑148 (MQ=255)
            atCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCg                                                                                                                                         <  1:1217601/149‑1 (MQ=255)
            atCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCg                                                                                                                                         <  1:1219347/149‑1 (MQ=255)
            atCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAAAAATTAAAATAAATCAAAACAATATCg                                                                                                                                         >  2:2535329/1‑149 (MQ=255)
                      tATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTGTTTTTTATTTTTAAAAAAATTAAAAGAAAAAAAAAAAAAAACGATGTTAAgaa                                                                                                                               >  1:2405128/1‑147 (MQ=255)
                          tgtCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTaa                                                                                                                           <  1:1828423/149‑1 (MQ=255)
                             cATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGtt                                                                                                                        <  2:816754/149‑1 (MQ=255)
                               tttttCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTGTTTTTAATTTATAAAAAAAATAAAAAAAAAAAAAACAAAAACGAAGTAAAACACAAAGTTTa                                                                                                                      >  2:1912973/1‑149 (MQ=255)
                                  ttCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAAt                                                                                                                   <  2:2229989/149‑1 (MQ=255)
                                     ggggAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTGTTTTTTAATTATAAAAAAATTAAAAAAAAAAAAAAAAAAAAAGATGTAAATAACAAATTTTaaaatta                                                                                                                >  1:713919/1‑145 (MQ=255)
                                       ggAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTgcgc                                                                                                              <  2:1713460/149‑1 (MQ=255)
                                         aaGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTgcgcgc                                                                                                            <  2:2572314/149‑1 (MQ=255)
                                         aaGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAAAAAATAAAAAAAAAAAACAAAAAAACGATTTAAAACAAAAATTTTAAATTtagcgc                                                                                                            >  2:1981310/1‑149 (MQ=255)
                                          aGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGcc                                                                                                           <  1:2450712/149‑1 (MQ=255)
                                          aGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGcc                                                                                                           <  1:2698343/149‑1 (MQ=255)
                                          aGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTGTTTTTTATTTATAAAATAATTAAAAGAAAAAAAAACAAAAGAGATGTAAAGCACAAAGTTTTAATTTAGCGcc                                                                                                           >  1:1386012/1‑149 (MQ=255)
                                            gATATAGAGATTTAAGCAATCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCaa                                                                                                         <  2:2227116/149‑1 (MQ=255)
                                            gATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTTATTTATAAAATAAATAAAAAAAAAAAACACAAAAGCGATTTAAATAAAAAAGTTTAAATTTAGCGCCac                                                                                                         >  2:157609/1‑148 (MQ=255)
                                            gATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCaa                                                                                                         <  2:1662793/149‑1 (MQ=255)
                                            gATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTAAAATAAATCAAAACAAAATAGATGTAAAGCACTAAGTTTAAAATTCGCGCCaa                                                                                                         >  2:158215/1‑149 (MQ=255)
                                               agagagATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTGTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCa                                                                                                      <  2:4275841/147‑1 (MQ=255)
                                                  gagaTTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATgg                                                                                                   <  2:1840449/149‑1 (MQ=255)
                                                   agaTTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGgc                                                                                                  <  1:2337464/149‑1 (MQ=255)
                                                   agaTTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGgc                                                                                                  <  1:2337813/149‑1 (MQ=255)
                                                    gaTTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAATAAATCAAAAAAAAATCGAAGTAAAGCACAAAGTTTAAAATTCGCCCCCAACAAGgcc                                                                                                 >  2:2836057/1‑148 (MQ=255)
                                                    gaTTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAAAAATTCAAATCAAAAAAGAAAAAAGCGATGTAAAGCACGAAGGTTAAAATTCGCGCCAAACAAGgcg                                                                                                 >  2:636208/1‑149 (MQ=255)
                                                     aTTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGgcgc                                                                                                <  1:1543268/149‑1 (MQ=255)
                                                           gcaagcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACaa                                                                                          <  2:1262905/149‑1 (MQ=255)
                                                           gcaagcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACaa                                                                                          <  2:1262803/149‑1 (MQ=255)
                                                            caagcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAAATAAAATAAAAAAAAAAAAAATAGATGTAAATAAAGAATTTTAAATTTAGCGCCCAACAAGGCGCGCACaaa                                                                                         >  2:128730/1‑148 (MQ=255)
                                                            caagcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTAAAAAATAAATAAAACAAATCAAAACAAAAGCGAAGTGAAGCACAAAGATTAAAATGCGCGCCCAAAAAGGCGCGCACaac                                                                                         >  2:1675323/1‑148 (MQ=255)
                                                              agcaTTTATTTGGAATGTATTTTTCTTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCt                                                                                       <  2:3007354/149‑1 (MQ=255)
                                                              agcaTTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAAATAAAATAAATCAATAAAAAAACGATGTAAAACAAAAAGTTTAAATTTCGCGCCAAACAATGCGCGCACaacca                                                                                       >  2:1725204/1‑146 (MQ=255)
                                                                       ttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAATTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCa                                                                              <  1:2885002/149‑1 (MQ=255)
                                                                           aaTGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTAAAATAAAAAAAAAAAAAAGCGATTTAAATCAATAAGTTTAAAATTAGCGCCAATAAAGGCGCGCACAAGCTAGAAAAACAAACt                                                                          >  2:2526426/1‑149 (MQ=255)
                                                                               tttttttCTTTCGACCTTTTATTATAAATAACAGTAGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATCGCGATGTAAAGCAATAAGTTTAATTTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAAtt                                                                      <  1:4217722/147‑1 (MQ=255)
                                                                                 tttttCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTtc                                                                    <  2:2741263/149‑1 (MQ=255)
                                                                                 tttttCGTTCGACCTTTGATTATACATAACATTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATAAAGACAATAGCTATGTAAAGCACTAATTTTAAATTGCGCGCAAATCATGGCGCGCACAAGCTATAATACCAACCTAATTtc                                                                    <  2:1108449/149‑1 (MQ=255)
                                                                                  ttttGGTTCGACCTTTGCTTATACATAACTTTCGTTTTTTTATTTTATAAAATAATTCAAATAAATAAAGAAAATAGCGATGTAAAGCACTAAGTTTAATTTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTtct                                                                   <  2:804217/149‑1 (MQ=255)
                                                                                  ttttCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTtct                                                                   <  2:4006709/149‑1 (MQ=255)
                                                                                   tttCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTAAAATTAATAAAGACAAAATCGATTTTAAGCAATAAATTTTAATTTCGCGCCAAACATTGGGCGCACAAGGGATAAATACAACCTAATTtgtc                                                                  >  2:1806175/1‑149 (MQ=255)
                                                                                     tcgttcgACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTctcct                                                                <  2:229383/149‑1 (MQ=255)
                                                                                              ttttGCTTATAAATAAAAGTCTTTTTTTTAATTTATAAAATAATTCAAATAAATCAAGACAATAGCGATGTAAAGCACTATGTTTAAATTGCGCGCCAATAATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTaga                                                       <  1:1585713/148‑1 (MQ=255)
                                                                                              cTTTTCTTATAAATAACAGTCTTTTTTTTAATTTATAAAATATTTCAAATAAATCAATAAAATAGCTATGTAAAGCAATAAGTTTAATTTGCGCGCAAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTaga                                                       <  1:4190699/149‑1 (MQ=255)
                                                                                               tttGCTTATACATAACTGTCGTTTTTTTAATTTATAAAATAATTCAAATAAATCAAGACAATAGCGATTTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTagag                                                      <  1:3484618/149‑1 (MQ=255)
                                                                                               tttGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTagag                                                      <  2:1679122/149‑1 (MQ=255)
                                                                                               tttGCTTATACATAAAATTCTTTTTTTTAATTTATAAAATAATTCAAATAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATGGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTagag                                                      <  1:991916/149‑1 (MQ=255)
                                                                                               tttGCTTATAAATAACATTCTTTTTTTTAATTTATAAAATAATTAAAAGAAATAAAGACAATAGCGATTTAAAGCACTATTTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTagag                                                      <  1:3484213/149‑1 (MQ=255)
                                                                                                   cTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGAc                                                  <  2:1534205/149‑1 (MQ=255)
                                                                                                        aCATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTatat                                             <  2:541734/149‑1 (MQ=255)
                                                                                                         cATAACAGTCTTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATAtc                                            <  1:3280920/149‑1 (MQ=255)
                                                                                                           tAACAGTCGTTTTTTTATTTTATAAAATAATTAAAAGAAATCAAGACAATTGCTTTGTAAAGCACTAAGTTTAAATTGCGCGCCAATATTGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATAtctc                                          <  1:2195434/149‑1 (MQ=255)
                                                                                                           tAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATAtctc                                          <  1:4416883/149‑1 (MQ=255)
                                                                                                            aaCAGTCGTTTTTTTAATTTATAAAATAATTAAAAGAAATCAAGAAAATAGCGATTTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTcc                                         <  2:3342448/149‑1 (MQ=255)
                                                                                                             aCAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATCGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCt                                        <  2:92586/149‑1 (MQ=255)
                                                                                                               aGTCGTTTTTTTAATTTATAAAATAATTCAAATAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAATTTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGa                                      <  1:1919642/149‑1 (MQ=255)
                                                                                                                gTCGTTTTTTTAATTTATAAAAAAAATCAAAAAAAAAAAAAAAAAATCGATTTAAAGAACAAAATTTAAAATTCGCCCCAAAAAATGGGCGCACACACTAAAAAAACAAACTAAATTAACCACCTCTTATAGTGACTATATATCCAGAt                                     >  2:3412822/1‑149 (MQ=255)
                                                                                                                 tCGTTTTTTTAATTTATAAAATAATTCAAATAAATAAATACAAAAGCGATGTAAAGCACTAAGTTTAAATTTAGCGCCAATCATGGCGCGCACAAGCTATAATAACAACCAAATTTATCCTCCACTTAGAGTGACTATATCTCCTGATa                                    >  1:2073712/1‑149 (MQ=255)
                                                                                                                 tCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTATCCTCCTCTTAGAGTGACTATATCTCCTGTTa                                    >  2:4258847/1‑149 (MQ=255)
                                                                                                                 tCGTTTTTTTAATTTATAAAATAATTAAAATAAATCAATACAATAGCGATTTAAAGCACTAATTTTAAATTTCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATa                                    >  2:954012/1‑149 (MQ=255)
                                                                                                                 tCGTTTTTTTAATTTATAAAATAATTAAAAGAAATCAATACAATAGCGATTTAAAGAACTAAGTTTAAATTTCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACATAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTtata                                    >  2:2839893/1‑149 (MQ=255)
                                                                                                                 tCGTTTTTTTAATTTATAAAATAATTAAAAGAAATCAATACAAAAGCGATGTAAAGCAATAAGTTTAAATTTCGCGCCAATAAAGGCGCGCACAAGCTATAATAACAAACAAATTTCTCCTCCTCTTAGAGTGACTATATATCATGATa                                    >  2:3689453/1‑149 (MQ=255)
                                                                                                                  cGTTTTTTTAATTTATAAAATAATACAAACAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAg                                   <  1:3746329/149‑1 (MQ=255)
                                                                                                                    tttttttAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGaa                                 <  1:342768/149‑1 (MQ=255)
                                                                                                                     ttttttAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAAt                                <  1:1806204/149‑1 (MQ=255)
                                                                                                                        tttAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGc                             >  2:2382505/1‑149 (MQ=255)
                                                                                                                        tttAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAAACTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGc                             >  2:2382510/1‑149 (MQ=255)
                                                                                                                         ttAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCg                            >  2:3655252/1‑149 (MQ=255)
                                                                                                                          tAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCgg                           >  1:2127955/1‑149 (MQ=255)
                                                                                                                           aaTTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGt                          >  1:3590781/1‑149 (MQ=255)
                                                                                                                            aTTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATCTCTCCTGATAGAATTGCGGTa                         >  2:1704045/1‑149 (MQ=255)
                                                                                                                            aTTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTa                         >  2:415020/1‑149 (MQ=255)
                                                                                                                              ttATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTAtt                       <  2:1244538/149‑1 (MQ=255)
                                                                                                                                   aaaTAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTa                  >  1:1550708/1‑149 (MQ=255)
                                                                                                                                     ataatTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATc                >  1:1940378/1‑149 (MQ=255)
                                                                                                                                     ataatTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATc                >  1:3293542/1‑149 (MQ=255)
                                                                                                                                     ataatTCAAAGAAATCAAGACAATAGCGATGTAAAGCAATAAGTTTAATGTGCGCGCCAATCTGGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATc                <  1:1891837/149‑1 (MQ=255)
                                                                                                                                     ataatTCAAAGAAATAAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATc                <  1:3765490/149‑1 (MQ=255)
                                                                                                                                      taatTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCa               >  1:2816985/1‑149 (MQ=255)
                                                                                                                                       aatTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCaa              >  2:1420516/1‑149 (MQ=255)
                                                                                                                                       aatTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCaa              >  2:4379450/1‑149 (MQ=255)
                                                                                                                                        atTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATAGACTATCaaa             >  1:2673457/1‑149 (MQ=255)
                                                                                                                                            aaaGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGcc         >  2:1580537/1‑149 (MQ=255)
                                                                                                                                             aataaaTCAAGCCAATCGCTTTGTAAAGCACTAATTTTAAATGGCGCGCCAATCAGGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGccc        <  1:36529/146‑1 (MQ=255)
                                                                                                                                             aataaaTCAAGACAATTGCGATTTAAAGCACTAATTTTAAATTGCGCGCAAATCTTGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGccc        <  1:1898538/146‑1 (MQ=255)
                                                                                                                                             aataaaTCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGccc        <  1:3823554/146‑1 (MQ=255)
                                                                                                                                             aataaaTCAAGAAAATCGCGATGTAAAGAACTAATTTTAAATTGCGCGCCAATCTTGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGccc        <  1:36119/146‑1 (MQ=255)
                                                                                                                                             aaGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGccc        <  1:2012932/149‑1 (MQ=255)
                                                                                                                                              ataaaTCAAGACAATCGCGATGTAAAGCACTAATTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGCCCt       <  1:1113263/147‑1 (MQ=255)
                                                                                                                                              ataaaTCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATGGCGCGCCAATCAGGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGCCCt       <  1:3184623/147‑1 (MQ=255)
                                                                                                                                              acaaaTAAAGACAATAGCGATTTAAACCAATAAGTTTAAATTGCGCCCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGCCCt       <  1:2598382/147‑1 (MQ=255)
                                                                                                                                              aGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGCCCt       >  1:636888/1‑149 (MQ=255)
                                                                                                                                                 aaTAAAGAAAATCGCGATGTAAAGAACTAATTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGCCCTGAt    <  1:1857138/149‑1 (MQ=255)
                                                                                                                                                  aTCAATACAATCGCGATTTAAAGCACTAATTTTAAATTGCGCGCCAATCAGGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGCCCTGAtt   <  1:777641/149‑1 (MQ=255)
                                                                                                                                                  aTCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGCCCTGAtt   >  1:2243218/1‑149 (MQ=255)
                                                                                                                                                  aTCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGCCCTGAtt   >  2:2660310/1‑149 (MQ=255)
                                                                                                                                                   tCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGCCCTGATTc  <  2:1488770/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
TCTTTTTGGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAGTTTAAATTGCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGCCCTGATTC  >  CP009273/2463767‑2464062

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: