| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,598,122 | T→G | 9.0% | L306R (CTT→CGT) | hyfC → | hydrogenase 4, membrane subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,598,122 | 0 | T | G | 9.0% | 553.8 / 3.4 | 191 | L306R (CTT→CGT) | hyfC | hydrogenase 4, membrane subunit |
| Reads supporting (aligned to +/- strand): ref base T (71/95); new base G (22/2); total (94/97) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.09e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 199 total aligned reads displayed.
CTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTCGCCACAACGTCGGGCCGCCGAATGGGGGGTTTTGTT > CP009273/2597974‑2598270 | ctcGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCt < 2:2465819/149‑1 (MQ=255) tcGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCtt < 1:2524735/149‑1 (MQ=255) tcGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCtt < 1:2524416/149‑1 (MQ=255) tcGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCtt < 1:121338/149‑1 (MQ=255) gcctgcctGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGc < 2:939339/149‑1 (MQ=255) gcctgcctGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGc < 2:2548543/149‑1 (MQ=255) gcctgcctGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGc < 2:2548840/149‑1 (MQ=255) tgcctgcTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATg < 1:1663463/149‑1 (MQ=255) tgcctgcTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATg < 2:3491173/149‑1 (MQ=255) gcctgcTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATgg < 1:4067677/149‑1 (MQ=255) ctgctgACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTTATCATTAACC‑AAGTGACCAGGCTTGGCTTAAGCCTTGCTTCGCTTGCATTGGt > 1:1027132/1‑149 (MQ=255) tgctgACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGtc < 1:1007777/149‑1 (MQ=255) tgctgACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGtc < 1:1009032/149‑1 (MQ=255) gctgACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGtct < 1:957690/149‑1 (MQ=255) tgACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGtcttc < 2:3781900/149‑1 (MQ=255) gACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTTATCATTAACC‑AATTGACCAGGCTTGGCTTAAGGCTTGATGGGCTTGGATGGGtgttgt > 2:2641312/1‑147 (MQ=255) aCTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTGTTTTTCTCATTCACC‑CCGTGACCTGGCGGGGCGTCAGCCAGGCGGCGGGTGCCTggggcgtggg > 1:2414779/1‑142 (MQ=255) aCTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTaa < 2:1971530/149‑1 (MQ=255) cTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTAATTAACC‑AAGTTACCTGGCTTGGCGTCATCCTTGCTGCGCTTGCTTGGGTCTTC‑TGGTTTAc > 2:27740/1‑149 (MQ=255) tGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCg < 1:1509833/149‑1 (MQ=255) tGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTGTTTTACTGAATCAAC‑AAGTGAACTGGCTTTGGGTCAGCCGTGCTGCGCGGGCAGGGGGGTTC‑TGGGTAAccc > 1:4236903/1‑148 (MQ=255) gTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTAATTCAAC‑ATGTTACCTGGGTTGGGTTCAGGCTTTCTGCGCTTGCATGGGTGTTG‑TGGTTAACCgg > 2:2434335/1‑149 (MQ=255) gTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTTCTCAATCACC‑CAGTGACCGGGCGTGGCGTCAGCCATGCTGCGCAGGCCTGGGGGGTC‑TGGGTACCCgggcg > 1:3052186/1‑146 (MQ=255) gTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCt < 2:3199298/149‑1 (MQ=255) gTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTGTTTTTCTCAATCACC‑CAGTTGCCTGGCGTGGCGTAAGCCTTGCTGCGCGTGCATGGGTCGTC‑TGGTTTACCGGTCt > 2:3546167/1‑149 (MQ=255) aCGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTa < 1:1448984/149‑1 (MQ=255) ctgctCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAgg < 1:835768/149‑1 (MQ=255) gctCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAg < 2:850374/149‑1 (MQ=255) gctCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAg < 1:807060/149‑1 (MQ=255) gctCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAg < 1:4423173/149‑1 (MQ=255) cAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑AAGTGACCAGGCTTGGCTTCAGCCGTGCTGCGCTTGCCGGGGTCTTC‑TGGGTAACCGGGCTGTAAGGAGCAc > 2:952308/1‑149 (MQ=255) aaGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACt < 2:2471090/149‑1 (MQ=255) aGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTg < 1:4083528/149‑1 (MQ=255) ggTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCAATCACC‑ATGTGACCAGGCTTGGCTTCAGCCTTGCTGCGCGTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGa > 2:1377499/1‑149 (MQ=255) tttGCTGATTTTTGTACTGTCATCAATCTCATAAAACACGCTGGCACGCGGTCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACgg < 2:1677143/149‑1 (MQ=255) tttGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTAAAAAATAAAC‑CAGTGACCAGGCTTGGCTTCAGCCATGCGGCGCTTGCAGGGGGCTTC‑TGGTTAAACCGTCAGGAAGGAGCACAGACgg > 2:2725984/1‑149 (MQ=255) ttGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGa < 2:4222890/149‑1 (MQ=255) tGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTAATTAACC‑AAGTGACCAGGCGTGGCTTAAGCCGTGGTGCGCGTGCCTGGGTCTTC‑TTGTTTAACGGTGTGTAAGGAGCACATACGGaa > 2:4098435/1‑149 (MQ=255) gCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAat < 1:4282216/149‑1 (MQ=255) tttGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGGatattggaa > 2:1456703/1‑144 (MQ=255) tttGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGaaa < 2:2904221/149‑1 (MQ=255) tGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAAt < 2:2890760/149‑1 (MQ=255) aCTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCtt < 2:1706983/149‑1 (MQ=255) tGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGc < 1:336930/149‑1 (MQ=255) gCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGctc < 1:3214917/149‑1 (MQ=255) gCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGctc < 2:1435971/149‑1 (MQ=255) ccTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGctct < 1:3821699/149‑1 (MQ=255) cTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTAATCATTAACC‑CTGTGACCTGGGTTGGCTTCAGCCTTGCTGCGCGTGCCTGGGTCTTC‑GGGTTAACCGGTCTGTAAGGAGCACAGACGGAAAATGGAAAATATTGctcgg > 2:1390930/1‑147 (MQ=255) tCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTga < 1:1278485/149‑1 (MQ=255) tCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCGTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTga < 2:2227329/149‑1 (MQ=255) gCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGt < 1:2437808/149‑1 (MQ=255) gCAGAAAACACGCTGGCACGCGGGCGTGTTTTTCTAATTAACC‑CAGTGACCGGGCGTGGCTTGAGCCGTGCTTCGCGTGGATGGGTGGTA‑TGGTTTAACGGTCTGTAATGAGCACAGACGGAATATTGAAAAAAATGGTCTgacgaccg > 2:1533944/1‑147 (MQ=255) cAGAAAACACGCTGGCACGCGGGCGTTTTTTAATAATTAAAC‑ATGTGACCTGGCATGGCTTAAGCCTTGCTGCGCGTGCATGGGTCTTC‑TGGGTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGtt > 2:3572790/1‑149 (MQ=255) gAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTAt < 2:2695255/149‑1 (MQ=255) gAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTAt < 1:3789733/149‑1 (MQ=255) gAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTAt < 2:494603/149‑1 (MQ=255) gAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTAACC‑AAGTGACCTGGCTTGGCTTCAGCCATGCTGCGCGTGCATGGGTCTTC‑TGGTTAACCGGTCGGTAAGGAGCACAGACGGAATATTGAAAATCTTGCTCTGACGACGGTAt > 2:3771490/1‑149 (MQ=255) aaaCACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATtg < 1:2899881/149‑1 (MQ=255) cacGCTGGCACGCGGGCGTTTTTTTCACAATCACC‑ATGTTGACAGGCTTGGCTTCAGCCGTGGTGCGCTTGCAGGGGTCTTA‑TTGGTAAACGGTCTGGAAGGAGCACTGACGGAATATGGAAAAAATTGCTATGAAGACCGTATtgctg > 2:1162251/1‑149 (MQ=255) cacGCTGGCACGCGGGCGTTTTTTAATCAATAACCAATGT‑ACCAGGCGTTGGGTCAGCCATGCTTCGGGTGGATGGGTCGTCGTGTTTAACC‑GTCTGTAAGGAGCACAGAAGGAATATTGAAAAAAATGCTAAGAAGACCGTATtgctg > 2:1162941/1‑149 (MQ=255) acGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATtgctgc < 1:3671263/149‑1 (MQ=255) gCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCt < 2:3021064/149‑1 (MQ=255) cTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCtt < 2:3931592/149‑1 (MQ=255) cTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCtt < 1:1434775/149‑1 (MQ=255) tGGCACGCGGGCGTTTTTTAATCAATAACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCGGTAAGGAGCACTGAAGGAATATGGAAAATCATTCTCTGACGACGTTCTTGCTGCCgtt > 2:3092774/1‑149 (MQ=255) ggCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCtttt < 2:1315169/149‑1 (MQ=255) gCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTa < 1:4136338/149‑1 (MQ=255) cgGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGgc < 1:1389517/149‑1 (MQ=255) ggCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCGTC‑TGGTTAACCGGTCTGTAAGGAACACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGgcgc > 2:2148063/1‑149 (MQ=255) ttACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGtcg > 1:2066461/1‑149 (MQ=255) cTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGtcgttt < 2:2994781/149‑1 (MQ=255) tCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTcgtttcgttt < 1:95808/149‑1 (MQ=255) cACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTGTCGtttt > 2:2533263/1‑149 (MQ=255) aTGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTCGcc > 2:715143/1‑149 (MQ=255) aTGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTCGcc < 1:3193053/149‑1 (MQ=255) tgtgACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTGTGGTTTTCGCca > 1:1110224/1‑149 (MQ=255) tgACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTCGCcaca > 2:708585/1‑149 (MQ=255) gACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTCGCCACaa > 1:154378/1‑149 (MQ=255) gACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTCGCCACaa < 2:1656774/149‑1 (MQ=255) gACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTAGTTTTCGCCACaa > 2:2308136/1‑149 (MQ=255) tggcttggctTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTCGCCACAACGTc < 1:1079327/149‑1 (MQ=255) tggcttggctTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTCGCCACAACGTc > 2:1084956/1‑149 (MQ=255) tggcttggctTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTCGCCACAACGTc < 2:2507858/149‑1 (MQ=255) ggcttggcttCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTGTCGGTTTCGCCACAACGTCg > 1:518229/1‑149 (MQ=255) gcttggcttCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTCGCCACAACGTCgg < 2:1769004/149‑1 (MQ=255) gcttggcttCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTCGCCACAACGTAgg > 1:2865907/1‑149 (MQ=255) ttggcttCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTCGCCACAACGTCGGgc < 1:1377499/149‑1 (MQ=255) gcttCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTCGCCACAACGTCGGgccgc > 2:3282685/1‑149 (MQ=255) gcttCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTCGCCACAACGTCGGgccgc > 2:1059932/1‑149 (MQ=255) cttCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTCGCCACAACGTCGGgccgcc > 2:758550/1‑149 (MQ=255) aGCCGTGCTGCGCTTTCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTCGCCACAACGTCGGGCCGCCGAAt < 1:2977399/149‑1 (MQ=255) gCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTCGCCACAACGTCGGGCCGCCGAATg > 2:2772641/1‑149 (MQ=255) gCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTAGCCACAACGTCGGGCCGCCGAATg > 1:147809/1‑149 (MQ=255) cTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTCGCCACAACGTCGGGCCGCCGAATggg > 2:2941437/1‑149 (MQ=255) ttGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTCGCCACAACGTCGGGCCGCCGAATgggg > 2:2846863/1‑149 (MQ=255) tgcGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTCGCCACAACGTCGGGCCGCCGAATGGGGGGtt > 2:2103647/1‑149 (MQ=255) tgcGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTCGCCACAACGTCGGGCCGCCGAATGGGGGGtt > 2:3982386/1‑149 (MQ=255) tgcGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTAGCCCCCACCTCGGGCCGCCGAATGGGGGGtt > 1:2212088/1‑149 (MQ=255) gcTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTGTCGTTTTCGCCACAACCTAGGGCCCCCGAAAGGGGGGTTTTg > 1:2743526/1‑149 (MQ=255) ttGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTGTCGTTTTAGCCACAACCGCGGGCCCCCGAATGGGGGGTtttttt > 1:1653962/1‑149 (MQ=255) | CTCGCCTGCCTGCTGACTTCACTTGTCGTTACGCTGCTCAAGGTTTTGCTGATTTTTGTACTGGCCTCAATCGCAGAAAACACGCTGGCACGCGGGCGTTTTTTACTCATTCACC‑ATGTGACCTGGCTTGGCTTCAGCCTTGCTGCGCTTGCATGGGTCTTC‑TGGTTAACCGGTCTGTAAGGAGCACTGACGGAATATGGAAAATCTTGCTCTGACGACGTTATTGCTGCCTTTTATCGGCGCACTGGTCGTTTCGTTTTCGCCACAACGTCGGGCCGCCGAATGGGGGGTTTTGTT > CP009273/2597974‑2598270 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |