| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,719,168 | A→T | 6.3% | intergenic (‑63/+260) | kgtP ← / ← rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,719,168 | 0 | A | T | 6.3% | 635.4 / 12.2 | 190 | intergenic (‑63/+260) | kgtP/rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon |
| Reads supporting (aligned to +/- strand): ref base A (42/134); new base T (12/2); total (54/136) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.89e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 190 total aligned reads displayed.
GAGGCCCCCACAATCGCCCAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGTAAGGAGGACACGTATGGAAGTGGGCAAGTTGGGGAAGCCGTA > CP009273/2719023‑2719312 | agGCCCCCACAATCGCCCAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAgg < 2:1194822/149‑1 (MQ=255) agGCCCCCACAATCGCCCAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAgg < 2:1194444/149‑1 (MQ=255) ccACAATCGCCCAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAatat > 2:2469479/1‑149 (MQ=255) cacaATCGCCCAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAAtatt < 2:3003731/149‑1 (MQ=255) cacaATCGCCCAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAAtatt < 1:1937456/149‑1 (MQ=255) cacaATCGCCCAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAAtatt < 1:800519/149‑1 (MQ=255) caATCGCCCAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAAtatta‑t < 2:2148084/149‑1 (MQ=255) caATCGCCCAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCGTTTGTTTA‑‑TTTTTTTTTTTAATGAAAtatta‑t > 1:640996/1‑149 (MQ=255) aTCGCCCAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATta‑taa > 2:2535669/1‑148 (MQ=255) aTCGCCCAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCGTTTGTTTA‑‑TTTTTTTTTTAAATGAAATATta‑taa > 2:3576579/1‑148 (MQ=255) ccAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATttg < 2:3419012/149‑1 (MQ=255) cAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATttgt < 1:1239645/149‑1 (MQ=255) aaaTGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATttgtt < 1:11088/149‑1 (MQ=255) aaTGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATttgttg < 1:282264/149‑1 (MQ=255) aaTGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATttgttg < 1:3770412/149‑1 (MQ=255) gcggcgACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCat < 1:195121/149‑1 (MQ=255) gcggcgACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCat < 1:4346158/149‑1 (MQ=255) gcggcgACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCat < 1:3588194/149‑1 (MQ=255) gcggcgACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCat < 1:1268778/149‑1 (MQ=255) gcgACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATc < 1:2342751/149‑1 (MQ=255) gacgaGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCAt < 1:4218006/149‑1 (MQ=255) acgaGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCGTTTGTTTA‑‑TTTTTTTTTTAAAGGAAAAATTA‑TACAATTTTTGCaaataaat > 2:1918971/1‑145 (MQ=255) cgaGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTa < 2:1653561/149‑1 (MQ=255) cgaGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTa < 2:2530876/149‑1 (MQ=255) cgaGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTa < 2:310901/149‑1 (MQ=255) gaGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTTTAAAGGAAATATTA‑TAAAATTTTTTCATATAATTAt > 2:2151734/1‑149 (MQ=255) gaGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTTTAAAGGAAAAATTA‑TACATTTGTTTCAAATCATTAt > 2:2725008/1‑149 (MQ=255) gaGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TAAATTTTTTTCATATAAatat > 2:686326/1‑149 (MQ=255) aGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTTTTTA‑‑TTTTTTTTTTAAAAGAAAAAATA‑TAAAATTTTTTCATAAAATTAtt > 1:2857426/1‑148 (MQ=255) aGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATg < 1:3791027/149‑1 (MQ=255) aGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATg < 1:2967401/149‑1 (MQ=255) gTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCGGGTGTTTT‑‑TTTTTTTTGTAAAGGTAATATTA‑TACATTTGTTGAATATGATTATGc > 1:1005356/1‑149 (MQ=255) aTCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTT‑‑TTTTTTTTTTTAAATGAATATTT‑TAAATTTTTTGCTGATCAATATTCaa > 1:514120/1‑149 (MQ=255) tCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAAc < 2:1762093/149‑1 (MQ=255) actactTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCt < 1:4061821/149‑1 (MQ=255) actacgTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCt < 2:2665848/149‑1 (MQ=255) tactTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTa < 2:39942/149‑1 (MQ=255) actTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCTGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTaa < 2:887456/149‑1 (MQ=255) actTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTaa < 1:3354116/149‑1 (MQ=255) ctTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAAc < 2:1855659/149‑1 (MQ=255) ctTGTCAGTGTGCTGTCTGCCGTTACAGTACTGTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAAc < 2:3012086/149‑1 (MQ=255) tGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCa < 1:2133060/149‑1 (MQ=255) tGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCa < 1:3278185/149‑1 (MQ=255) tGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCa < 1:2133127/149‑1 (MQ=255) tCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATg < 2:3653980/149‑1 (MQ=255) cAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGa < 2:4306200/149‑1 (MQ=255) gTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAAt < 2:3764748/149‑1 (MQ=255) tGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATtta < 1:4006462/149‑1 (MQ=255) tGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCGTTTGTTTA‑‑TTTTTTTTTTTAAGGAAATATTA‑TAAATTTTTTGAATATAATTATTCAAACATAAACAAGAATtta > 2:4368665/1‑149 (MQ=255) gCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATttag < 1:207805/149‑1 (MQ=255) tCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATttagttag < 2:2649602/149‑1 (MQ=255) gCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAg < 1:3636707/149‑1 (MQ=255) gCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCGTTTGTTTA‑‑TTTTTTTTTTAAATGAAAAATTA‑TTAATTTTTTTCAAATAATTATTAAACCAAAAACAAGAATttttttagaat > 1:2534268/1‑146 (MQ=255) gCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCGTTTGTTTA‑‑TTTTTTTTGGAAAGGAAATATTA‑TACATTTGTTTCATATCATTATGCCACCTTAACCATGAATttaggtagacg > 2:3897858/1‑146 (MQ=255) gTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGaa < 2:1397366/149‑1 (MQ=255) aGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTTTTTA‑‑TTTTTTTTTTAAATGAAAAAATA‑TAAAATTTTTTCAAAAAAATATTCAAACATAAACAATAAATTATTTATCAGGaaaaatg > 2:976551/1‑146 (MQ=255) aGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑‑TTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGt < 1:203545/149‑1 (MQ=255) gTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCGTGTTTTTT‑‑TTTTTTTTTTTAATTTAATATTATTAAATTTTTTG‑ATTTAAATATTCAACAATAAAAAATAATTTATTTTTGAGGAAAATGGt > 1:4219692/1‑149 (MQ=255) cTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTTTAATGGGAATATTA‑TAAATTTTTTTCATATCAATATTCAACCAAAAACAATAATTTTTTTAGCAGGAAAAAGGTTAt > 2:223075/1‑149 (MQ=255) cTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTAt < 1:1684131/149‑1 (MQ=255) tttCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTAtt < 1:4368665/149‑1 (MQ=255) ttCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTg < 2:2424439/149‑1 (MQ=255) tCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTAtt < 1:3302921/149‑1 (MQ=255) gccatgccatTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTgagga < 1:3429220/149‑1 (MQ=255) catgccatTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCTCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGc < 1:3097217/149‑1 (MQ=255) catgccatTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGc < 1:88215/149‑1 (MQ=255) atgccatTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCt < 2:4011524/149‑1 (MQ=255) tgccatTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTTTAAAGGAAAAAATA‑TACATATGTTTCATATAATTATTCAAAAATAAACATTAATTTAGTTAGAAGGAAAAAGGTTATTTAGGAGCtt > 2:1784080/1‑149 (MQ=255) tgccatTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCGTTTGTTTA‑‑TTTTTTTTTTAAAGGAAATATTA‑TACAATTGTTTCATATCATTATGCAAACAAAAACAAGAATTTAGTTAGCAGGAAAAAGGTTATTGTTGAGCtt > 2:4382088/1‑149 (MQ=255) ccatTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCGTTTGTTTA‑‑TTTTTTTTTTAAAGGAAATAATA‑TAAAATTTTTTCATAACAATATTCAACCAAAAACAATAATTTAGTTATCAGGAAAATTGGTATTTATGTGCTTaa > 1:2908077/1‑149 (MQ=255) catTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAg < 1:2011482/149‑1 (MQ=255) catTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAg < 1:1617375/149‑1 (MQ=255) catTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCGTTTTTTTA‑‑TTTTTTTTTTTAAGGTAAAATTT‑TAAATTTTTTTCATATAAATATTAAAACATAAACATGAATTTATTTTGCAGGAAAATGGTTTTTGATGAGCTTaat > 2:3133073/1‑148 (MQ=255) tATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGAt < 2:1325607/149‑1 (MQ=255) tATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGAt < 1:1316439/149‑1 (MQ=255) gaTGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTTCAGGAATTATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGTATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGAt < 1:1728297/148‑1 (MQ=255) tGTCTCCTGCCGTAATCCGATTCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATaa < 1:2303096/149‑1 (MQ=255) tctcCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAAt < 2:4115627/149‑1 (MQ=255) tctcCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAAt < 1:989592/149‑1 (MQ=255) tctcCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAAt < 1:3209324/149‑1 (MQ=255) ctcCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAAtt < 1:3777291/149‑1 (MQ=255) ctcCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAAtt < 1:3777456/149‑1 (MQ=255) ccGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGt < 2:1921251/149‑1 (MQ=255) cGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGTa < 2:2411427/149‑1 (MQ=255) gTAATCCGATGCTTTTGTCGGTCGCGTTTGTTTA‑‑TTTTTTTTGTAAAGGAAAAATTA‑TAAATTTTTTTCATATCATTATTCAAACATAACCAATAATTTAGTTATCAGGAAAAAGGTTATTTAGGAGCTTAAGGTTAAATTTATGGtta > 2:679503/1‑147 (MQ=255) aaTCCGATGCTTTTGTCGGTCGCTTTTTTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TAAAATTTTTTAATATAAATATTAAAAAATAAACAAGAATTAATTTATAAGGAAAATTTTTATTTAGTAGCTTTATGATAAATTTATTGTAagg > 2:3246212/1‑149 (MQ=255) aTCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGTAagga < 1:166526/149‑1 (MQ=255) aTCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGTAagga < 2:2060665/149‑1 (MQ=255) ttttGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCAGATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGTAAGGAGGACACGTa < 2:2334152/149‑1 (MQ=255) tttGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGTAAGGAGGACACGTAt < 2:1255353/149‑1 (MQ=255) ttGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGTAAGGAGGACACGTATg < 2:3247024/149‑1 (MQ=255) ggtcgCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTGAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGTAAGGAGGACACGTATGGAAGt < 2:3963171/149‑1 (MQ=255) cgCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGTAAGGAGGACACGTATGGAAGTggg > 2:943919/1‑149 (MQ=255) tttGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGTAAGGAGGACACGTATGGAAGTGGGCAAg > 2:2813413/1‑149 (MQ=255) ttGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGTAAGGAGGACACGTATGGAAGTGGGCAAGt > 1:1440500/1‑149 (MQ=255) tGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGTAAGGAGGACACGTATGGAAGTGGGCAAGtt < 1:2824499/149‑1 (MQ=255) ttA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGTAAGGAGGACACGTATGGAAGTGGGCAAGTTggg < 2:4181217/149‑1 (MQ=255) ttA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGTAAGGAGGACACGTATGGAAGTGGGCAAGTTggg < 2:1962064/149‑1 (MQ=255) a‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGTAAGGAGGACACGTATGGAAGTGGGCTAGTTGGGGa > 1:643330/1‑149 (MQ=255) ttttttGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGTAAGGAGGACACGTATGGAAGTGGGCAAGTTGGGGAAGc < 1:3678933/149‑1 (MQ=255) | GAGGCCCCCACAATCGCCCAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTA‑‑TTTTTTTTGTAAAGGAAATATTA‑TACATTTGTTGCATATCATTATGCAACCTTAACCATGAATTTAGTTAGCAGGAAAATGGTTATTGAGGAGCTTAAGGATAAATTTCTGGTAAGGAGGACACGTATGGAAGTGGGCAAGTTGGGGAAGCCGTA > CP009273/2719023‑2719312 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |