| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,908,686 | G→T | 18.2% | E91* (GAA→TAA) | barA → | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,908,686 | 0 | G | T | 18.2% | 521.3 / 11.3 | 198 | E91* (GAA→TAA) | barA | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY |
| Reads supporting (aligned to +/- strand): ref base G (110/35); new base T (4/44); total (114/84) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.26e-17 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 210 total aligned reads displayed.
GGAAGATGCCGGTGCCAGCATTATTGAGCCGCTTGCAGTTTCTACTGAATATGGCATGAGCCTGCAAAATCGCGAATCTATCGGTCAGTT‑AATAAGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACTCGTGACGGCGATATTATGATCCTCCGCACGCCGATTATTTCTGAGAGTTA > CP009273/2908538‑2908834 | aaGATGCCGGTGCCAGCATTATTGAGCCGCTTGCAGTTTCTACTGAATATGGCATGATCCTGCAAAATCGCGAATCTATCGGTCAGTT‑AATAAGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGGTTATGATGaa > 1:3731623/1‑149 (MQ=255) gATGCCGGTGCCAGCATTATTGAGCCGCTTGCAGTTTCTACTGAATATGGCATGAGCCTGCAAAATCGCGAATCTATCGGTCAGTT‑AATAAGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGaaaa < 2:490354/149‑1 (MQ=255) ccGGTGCCAGCATTATTGAGCCGCTTGCAGTTTCTACTGAATATGGCATGAGCCTGCAAAATCGCGAATCTATCGGTCAGTT‑AATAAGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAAc < 2:2599364/149‑1 (MQ=255) cGGTGCCAGCATTATTGAGCCGCTTGCAGTTTCTACTGAATATGGCATGAGCCTGCAAAATCGCGAATCTATCGGTCAGTT‑AATAAGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAAcc < 1:1207243/149‑1 (MQ=255) cGGTGCCAGCATTATTGAGCCGCTTGCAGTTTCTACTGAATATGGCATGAGCCTGCAAAATCGCGAATCTATCGGTCAGTT‑AATAAGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAAcc < 2:2067776/149‑1 (MQ=255) cAGCATTATTGAGCCGCTTGCAGTTTCTACTGAATATTGCATTATCCAGCAAAATAGCGAATCTATCGGTCAGTT‑AATAATCGTAATGCATCGTCGCCATTCCGATATTTTTCGCGCGATTTCGGTTTATGATTAAAATAAACGActct > 1:500279/1‑149 (MQ=255) cATTATTGAGCCGCTTGCTGTTTCTACTTAATATGGAATGAGCCTGAAAAATCGCTAATCTATCGGTAATTT‑AATAAGCTTACTGCATCGTCGCCATTCCTATATTGTTCGCGCTATTTCGGTTTATGATGAAAATAACCGACTCTTTg < 2:1437882/149‑1 (MQ=255) attattGAGCCGCTTGCAGTTTCTACTGAATATGGCATGAGCCTGCAAAATCGCGAATCTATCGGTCAGTT‑AATAATCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATTAAAATAACCGACTCTTTGt > 2:2631839/1‑149 (MQ=255) gAGCCGCTTGCAGTTTCTACTGAATATGGCATGAGCCTGCAAAATCGCGAATCTAACGGTCAGTT‑AATAAGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTc > 2:3612712/1‑149 (MQ=255) aGCCGCTTGCAGTTTCTACTGAATATGGCAATAGCCTGCAAAAACGCGAATCTATCGGTCAGTT‑AATAAGCGTACTGCATCGTCGCCAATCCGATATTGTTCGCGCGATTTAGGTTTATGATGAAAATAACCGACTCTTTTTCACCTcc > 1:2816590/1‑149 (MQ=255) aGCCGCTTGCAGTTAATACTTAATATGGCATGCGCCTGCAAAATCGCGAATATATCGTACATTT‑AATACGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTGGTTTTTTGATTAAAATAACCGACTCTTTGTCACCTcc < 1:2120344/149‑1 (MQ=255) gCTTGCAGTTTCTACTGAATATGGCATGAGCCTGCAAAATCGCGAATCTATCGGTCAGTT‑AATAAGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAAtt > 2:559104/1‑149 (MQ=255) ttGCAGTTTCTACTGAATATGGCATGAGCCTGCAAAATCGCGAATCTATCGGTCAGTT‑AATAAGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAAtttt > 1:51300/1‑149 (MQ=255) aGTTTCTACTGAATATGGCATGAGCCTGCAAAATCGCGAATCTATCGGTCAGTT‑AATAAGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATc > 2:60669/1‑149 (MQ=255) gTTTCTACTGAATATGGCATGAGCCTGCAAAATCGCGAATCTATCGGTCAGTT‑AATAAGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCt > 1:407240/1‑149 (MQ=255) gTTTCTACTGAATATGGCATGAGCCTGCAAAATCGCGAATCTATCGGTCAGTT‑AATAAGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCt > 2:273398/1‑149 (MQ=255) tttCTACTGAATATGGCATGAGCCTGCAAAATCGCGAATCTATCGGTCAGTT‑AATAAGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCtt > 2:3010576/1‑149 (MQ=255) tCTACTGAATATGGCTTGAGCCTGAAAAATCGCGAATCTATCGGTCAGTT‑AATAAGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGTTTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGa < 2:4021496/149‑1 (MQ=255) tCTACTGAATATGGCATGAGCCTTCAAAATCGCGAATCTATCGGTCAGTT‑AATAAGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGTTTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGa < 2:1801315/149‑1 (MQ=255) aCTGAATATGGCATGAGCCTGCAAAATCGCGAATCTATCGGTCAGTT‑AATAAGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATcc > 2:3868120/1‑149 (MQ=255) ttaattgggCTTGAGCCTGCAAAATGGCGAATCTTGGGGTCATTT‑AATCGGCGTAGTGCATGGTCGCCATGCCGATTTTGTGCGCGCGTTTTGGTTTTTTGTTCAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCt < 2:2219058/142‑1 (MQ=255) aaTATGGCATGAGCCTGCAAAATCGCGAATCTATCGGTCAGTT‑AATAAGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCtca > 1:140286/1‑149 (MQ=255) atatGGCATGACCCTGAAAAATCGCAAATCTATCGG‑CATTTAAAAAAGCTTACTGCATCGTCGCAATTCCGATTTTTTTCGCGCTATTTCGTTTTATTATAAAAAAAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCtcat < 2:2974321/149‑1 (MQ=255) tatGGCATGAGCCTGCAAAATCGCGAATCTATCGGTCAGTT‑AATAAGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCtcatc > 2:1072379/1‑149 (MQ=255) aTGAGCCTGCAAAATCGCGAATCTATCGGTCAGTT‑AATAAGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCa > 2:1826028/1‑149 (MQ=255) aTGAGCCTGAAAAATCGCTAATCTTTCGGTAAGTT‑AATACGCGTATTGCATGGTCGCCATTCCGTTTTTGTTCGGGCGTTTTGGTTTTATTATTAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCa < 1:582144/149‑1 (MQ=255) gCCTGAAAAATCGCTAATCTAGGGGTCTTTT‑AATAAGCGTACTGAATCGTCCCAATTCCTATATTGTTCGCGCTTTTTGGTTTTATGATTAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTc < 1:3617186/149‑1 (MQ=255) ccTGAAAAATCGCTAATATATCGGTAATTT‑AATAAGCGAACTGCATCGTCGCCATTCCTATATTGTTCGCGCGATTTCGTTTTATGATCAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCg < 1:738502/149‑1 (MQ=255) aaTCGCGAATCTATCGGTCAGTT‑AATAAGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCaa > 1:2278590/1‑149 (MQ=255) aaTCGCGAATCTATCGGTCAGTT‑AATAAGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCaa > 1:2278577/1‑149 (MQ=255) aTCGCGAATCTATCGGTCAGTT‑AATAAGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCCCATCAATGCAGCTCGGCAGCAAc > 1:22257/1‑149 (MQ=255) tCGCTAATCTATCGGTCTGTT‑AATAAGCGTACTGCATCGTCGCCATTCCTATTTTGTTCGCGCTTTTTCGTTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACg < 1:4418166/149‑1 (MQ=255) gcgAATCTATCGGTCAGTT‑AATAAGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTg > 2:16924/1‑149 (MQ=255) gcgAATCTATCGGTCAGTT‑AATAAGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTg > 2:239729/1‑149 (MQ=255) gcgAATCTATCGGTCAGTT‑AATAAGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTg > 2:239700/1‑149 (MQ=255) taaTATATCGTTCTTTT‑AATAAGCGTACGGCATCGTCGCAATTCCGATATTGTTCGCGCTTTTTCGTTTTATTATTAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGcc < 2:3021337/148‑1 (MQ=255) aaTCTATCGGTCAGTT‑AATAAGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCg > 1:366819/1‑149 (MQ=255) aaTCTATCGGTCAGTT‑AATAAGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCg > 1:1477318/1‑149 (MQ=255) tatATCGGTCAGTT‑AATAAGCGTACTGCATCGGCGCAATTCCTATTTTGTGCGCGCGATTTGGTTTTATGATTAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGtt < 2:1185043/147‑1 (MQ=255) tCTATGGTTCAGTT‑TATAAGCGTACTGCATCTTAGCCATTCCGATTTTTTTCGCGCGATTTCGGTTTTTGATTAAAAAAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGtt < 2:3683294/149‑1 (MQ=255) tCTATCGGTCTGTT‑AATACGCGTACTGCATCGGCGCCATTCCGATTTTGGTCGCGCGATTTCGGTTTTTGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGtt < 2:683634/149‑1 (MQ=255) tCTATCGGTCAGTT‑AATACGCGTACTGCATCGTCGCCATTCCGATTTTGTTCGCGCGATTTCGGTTTATGATTAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGtt < 2:159141/149‑1 (MQ=255) tCTATCGGTCAGTT‑AATAAGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCTATTTGGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGtt < 2:1185019/149‑1 (MQ=255) tATCGGTCTTTT‑AATAAGCTTACTGAATCGTCGCATTTCCGATTTTGTTCGCGCGATTTCGTTTTATTATTAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTc < 1:3246011/149‑1 (MQ=255) aTCGGTCATTT‑AATAAGCGTACTGCATCGTCGCCTTTCCGTTATTTTGCGCGCGATTTCGTTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTcc < 2:2364499/149‑1 (MQ=255) aTCGGTCAGTT‑AATACGCGTACGGCATCGTCGCCTTTCCTATATTGTTCGCGCGATTTCGGTTTATGATTAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTcc < 2:2366681/149‑1 (MQ=255) gTCAGTT‑AATAAGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGc > 2:2840796/1‑149 (MQ=255) tCAGTT‑AATAAGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGcc > 1:3552766/1‑149 (MQ=255) ttt‑AATAAGCGTACTGCATCGTCGCCATTCCGTTTTTGTTCGCGGTATTTCGTTTTTTTTTGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGc < 1:1765417/148‑1 (MQ=255) tt‑AATAAGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCt > 2:1787425/1‑149 (MQ=255) aataaGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCa > 1:2837596/1‑149 (MQ=255) aataaGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCa > 1:1912764/1‑149 (MQ=255) aataaGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCa > 2:1907909/1‑149 (MQ=255) taaGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACt > 1:394515/1‑149 (MQ=255) aaGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTg > 1:2919388/1‑149 (MQ=255) aGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGt > 1:4317226/1‑149 (MQ=255) aGCGTACTGCATCGTCGCAATTCCGATTTTGTTCGCGCGATTTGGGTTTATTATTAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGt < 1:1549831/149‑1 (MQ=255) gCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTc > 2:4310140/1‑149 (MQ=255) gCGTACGGAATCGTCGCCATCCCGATAGGGTTCGCGCGATTTCGGTTTATTATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTc < 2:3846715/149‑1 (MQ=255) cGTACTGCTTCGTCGCCATTCCGATTTTGTTCGCGCGTTTTCGGTTTTTGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCa < 2:859070/149‑1 (MQ=255) cGTACTGCATCGTCGCCATTCCGATTTTGTTCGCGCGTTTTCGGTTTATGATTAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCa < 2:1980030/149‑1 (MQ=255) gTACTGCATCGTCGCCATTCCTTTTTGGTTCGCGGTTTTTGGTTTTTTTCTTAAAAAAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCAc < 1:886265/149‑1 (MQ=255) tACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACt > 1:2963723/1‑149 (MQ=255) tACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACt > 1:4219282/1‑149 (MQ=255) cTGCATCGTCGCCATTCCTATTTTGTTCGCGCGATTTCGGTTTATGATTAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACTCg < 1:3844036/149‑1 (MQ=255) gCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACTCGTg > 2:857133/1‑149 (MQ=255) gCACCGTCGCAATTCCTATTTTGTTCGCGCGTTTTGGGTTTATGATTAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACTCGTg < 2:394515/149‑1 (MQ=255) tcgCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACTCGTGACGGCg > 2:4374112/1‑149 (MQ=255) tcgCCATTCCGATAGTGTTCGCGCGATTTCGGTTTATGATGAAAATACCCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACTCGTGACGGCg < 1:2569611/149‑1 (MQ=255) gCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTATGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACTCGTGACGGCGat > 2:3097276/1‑149 (MQ=255) ttCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACTCGTGACGGCGAtatta > 1:1816655/1‑149 (MQ=255) gcctatatTGTTCGCGCGTTTTGGGTTTATTATTAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACTCGTGACGGCGAtattat < 1:1007121/145‑1 (MQ=255) cGATTTTGTTCGCGGGATTTCGTTTTTGGATTAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACTCGTGACGGCGATATTATGa < 1:4324068/149‑1 (MQ=255) gATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACTCGTGACGGCGATATTATGAt > 1:1392739/1‑149 (MQ=255) gATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACTCGTGACGGCGATATTATGAt > 1:3267459/1‑149 (MQ=255) atatTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACTCGTGACGGCGATATTATGAtc > 1:3809786/1‑149 (MQ=255) atatTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACTCGTGACGGCGATATTATGAtc < 2:3289966/149‑1 (MQ=255) tatTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACTCGTGACGGCGATATTATGAtcc > 2:1349804/1‑149 (MQ=255) ttGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACTCGTGACGGCGATATTATGAtcctc > 1:848170/1‑149 (MQ=255) tGTTCGCGCGTTTTGGGTTTATGATTAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACTCGTGACGGCGATATTATGAtcctcc < 1:4168091/149‑1 (MQ=255) gTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACTCGTGACGGCGATATTATGATCCTCCg > 1:3044940/1‑149 (MQ=255) gATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGTTCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACTCGTGACGGCGATATTATGATCCTCCGCACGCCGa > 1:4368677/1‑149 (MQ=255) gATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACTCGTGACGGCGATATTATGATCCTCCGCACGCCGa > 1:3930490/1‑149 (MQ=255) ttttCGGTTTATTATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACTCGTGACGGCGATATTATGATCCTCCGCACGCCGat < 1:1639953/148‑1 (MQ=255) aTTTGGTTTTTTGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACTCGTGACGGCGATATTATGATCCTCCGCACGCCGat < 1:517204/149‑1 (MQ=255) tttCGTTTTATGATCAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACTCGTGACGGCGATATTATGATCCTCCGCACGCCGatt < 2:4093310/149‑1 (MQ=255) tttCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACTCGTGACGGCGATATTATGATCCTCCGCACGCCGatt > 1:2605939/1‑149 (MQ=255) ttCGTTTTATTATTAAAAAAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACTCGTGACGGCGATATTATGATCCTCCGCACGCCGatta < 1:4227441/149‑1 (MQ=255) ttCGTTTTATGATTAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACTCGTGACGGCGATATTATGATCCTCCGCACGCCGatta < 1:2506975/149‑1 (MQ=255) tCGTTTTATTATTAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACTCGTGACGGCGATATTATGATCCTCCGCACGCCGattat < 1:2701214/149‑1 (MQ=255) cGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACTCGTGACGGCGATATTATGATCCTCCGCACGCCGattatt > 2:1249048/1‑149 (MQ=255) ggTTTTTGATTAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACTCGTGACGGCGATATTATGATCCTCCGCACGCCGATTAttt < 1:332819/149‑1 (MQ=255) gTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACTCGTGACGGCGATATTATGATCCTCCGCACGCCGATTATTTc > 2:2020039/1‑149 (MQ=255) gTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACTCGTGACGGCGATATTATGATCCTCCGCACGCCGATTATTTc > 1:2359582/1‑149 (MQ=255) gTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACTCGTGACGGCGATATTATGATCCTCCGCACGCCGATTATTTc > 2:3210372/1‑149 (MQ=255) tttATGTTTAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACTCGTGACGGCGATATTATGATCCTCCGCACGCCGATTATTTCt < 1:3610636/149‑1 (MQ=255) tattatTAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACTCGTGACGGCGATATTATGATCCTCCGCACGCCGATTATTTCTga < 1:1612125/149‑1 (MQ=255) tATGAGTAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACTCGTGACGGCGATATTATGATCCTCCGCACGCCGATTATTTCTga < 2:2895568/149‑1 (MQ=255) atgatgAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACTCGTGACGGCGATATTATGATCCTCCGCACGCCGATTATTTCTgag > 1:1644296/1‑149 (MQ=255) gatgaAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACTCGTGACGGCGATATTATGATCCTCCGCACGCCGATTATTTCTGagag > 1:103141/1‑149 (MQ=255) | GGAAGATGCCGGTGCCAGCATTATTGAGCCGCTTGCAGTTTCTACTGAATATGGCATGAGCCTGCAAAATCGCGAATCTATCGGTCAGTT‑AATAAGCGTACTGCATCGTCGCCATTCCGATATTGTTCGCGCGATTTCGGTTTATGATGAAAATAACCGACTCTTTGTCACCTCCAATTTTCATCTTGATCCCTCATCAATGCAGCTCGGCAGCAACGTGCCGTTTCCTCGCCAGCTCACTGTCACTCGTGACGGCGATATTATGATCCTCCGCACGCCGATTATTTCTGAGAGTTA > CP009273/2908538‑2908834 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |