| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,439,422 | G→T | 7.9% | I26I (ATC→ATA) | rplF ← | 50S ribosomal subunit protein L6 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,439,422 | 0 | G | T | 7.9% | 541.9 / 3.8 | 196 | I26I (ATC→ATA) | rplF | 50S ribosomal subunit protein L6 |
| Reads supporting (aligned to +/- strand): ref base G (79/92); new base T (14/11); total (93/103) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.97e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 199 total aligned reads displayed.
CCATTGAGTTCAGCAGGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGT‑CAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAG > CP009273/3439274‑3439570 | cATTGAGTTCAGCAGGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGa < 1:816909/149‑1 (MQ=255) gAGTTCAGCAGGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGt < 1:3368068/149‑1 (MQ=255) aGTTCAGCAGGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGta < 1:1312456/149‑1 (MQ=255) agcagGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTTATCGTAATAAc > 1:1431689/1‑149 (MQ=255) gcagGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAAcc > 2:3476018/1‑149 (MQ=255) agGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTg < 1:590643/149‑1 (MQ=255) agGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGGTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTg > 2:499657/1‑149 (MQ=255) gggCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTTATCGTAATAACCTGa > 2:125981/1‑149 (MQ=255) gggCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGa > 2:1604126/1‑149 (MQ=255) gggCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGa > 2:730792/1‑149 (MQ=255) gggCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGa < 2:3480744/149‑1 (MQ=255) gggCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGa > 1:1009630/1‑149 (MQ=255) ggCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTGTTTACCTTTGATCGTAATAACCTGAc > 2:570692/1‑149 (MQ=255) gCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGAcc > 2:2763704/1‑149 (MQ=255) cgcgcgGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGtt < 1:4059926/149‑1 (MQ=255) cgcgcgGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGtt < 1:2642270/149‑1 (MQ=255) gcgcgGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTg < 1:1282104/149‑1 (MQ=255) gcgGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGAt > 2:176906/1‑149 (MQ=255) gcgGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGAt < 2:4124834/149‑1 (MQ=255) gTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGAtttt < 1:144044/149‑1 (MQ=255) ccAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTAc < 2:3020762/149‑1 (MQ=255) ccAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTGTTTACCTTTGATCGTAAAAAACATACCGTTGATTTTTAc > 1:1056250/1‑149 (MQ=255) cAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACg < 1:212808/149‑1 (MQ=255) cAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTGTTTTACTTTTTTCGTCATAAACAGACCGTTGATTTTTaag > 1:385465/1‑147 (MQ=255) aGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGt < 1:430026/149‑1 (MQ=255) gCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGT‑c < 2:2395721/149‑1 (MQ=255) gCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTAAGT‑c > 2:2259366/1‑149 (MQ=255) tgtgCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGT‑CAAc < 1:2241240/149‑1 (MQ=255) tgtgCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGT‑CAAc < 1:2800053/149‑1 (MQ=255) gCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGT‑CAACGcc < 2:533645/149‑1 (MQ=255) ccGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATAGTAATAACCAGACCGTTTATTTTTAAGT‑CAACGCCGGCAgg > 2:2976873/1‑149 (MQ=255) cGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGT‑CAACGCCGGCAGGa < 2:1944799/149‑1 (MQ=255) tCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGT‑CAACGCCGGCAGGaac > 2:1793027/1‑149 (MQ=255) cTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGT‑CAACGCCGGCAGGaaca > 2:2843957/1‑149 (MQ=255) tGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGT‑CAACGCCGGCAGGaacaa < 2:3248637/149‑1 (MQ=255) tGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGT‑CAACGCCGGCAGGaacaa < 1:3654540/149‑1 (MQ=255) aaCCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTGTTTACCTTTTATCGTTATAAACAGACCGTTTATTTTTAAGT‑CAACGCCGGCAGGCACAAAGAcc > 1:451727/1‑149 (MQ=255) cgcgGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTGTTTAACTTTTTTAGTAATAACAATAACCTTGATTTTTATTT‑AAAACCCCGCAGGTACAACGACCCGTGCttt > 1:407973/1‑149 (MQ=255) cgcgGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTGTTTAACATTTATCGGAATAAACTGACCGTTGATTTTTAAGT‑CAACGCCCGCAGGTACAACCACCGGTGCgtt > 1:1215898/1‑149 (MQ=255) aCCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCAGACCGTTGATTTTTACGT‑CAACGCCGGCAGGAACAACGACCCGTGCTTTAGCaa > 1:2035327/1‑149 (MQ=255) aCCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCGTTGATCGTAATAACCTGACCGGTGATTTTTACGT‑CAACGCCCGCAGGAACAACGACCGGTGCTTTAGCaa > 1:157752/1‑149 (MQ=255) aCCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTGTTTACCTTTGATCGTAATAACCAGACCGTTGATTTTTACGT‑CAACGCCGGCAGGAACAACGACCGGTGCTTTAGCaa > 1:3565104/1‑149 (MQ=255) cGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTAACTTTTATAGTAAAAAACTGACCGTTGATTTTTAAGT‑CAACGCCGGCAGGAAAAACGACCGGTGCTTTAGCAaca > 1:1320257/1‑149 (MQ=255) cGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTGTTTACCTTTGATCGTAATAAACGGACCGTTGATTTTTACGT‑CCACGCCCGCAGGAACAACGACCCGTGCTTTAGCAaca > 1:3905780/1‑149 (MQ=255) acggTCTGGGTATTATCTGAATGTTTAACTTCAACAGAATCGTTGAGAGTACTAGTCAGCTCGCCGTTTTTACCTTTGATCTTAATAACCTGACCGTTGATTTTTACGT‑CAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACg < 2:463255/147‑1 (MQ=255) aGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCGTTGATCGGAATAACCGGACCCTTGATTTTTACGT‑CAACGCCCGCCGGCACAACGACCGGTGCTGTAGCAACACga > 1:1615341/1‑149 (MQ=255) aGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTGTTTAACTTTTATAGTAATAAACAGACCGTTGATTTTTAAGT‑CAACGCCGGCAGGTACAACGACCCGTGCTTTAGCAACACga > 1:3115084/1‑149 (MQ=255) gTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGT‑CAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACgaga > 2:522614/1‑149 (MQ=255) gTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCATTGATCGTAATAACCTGAACGTTGATTTTTACGT‑CAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACgaga > 2:522659/1‑149 (MQ=255) tCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGT‑CAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGAc > 2:1577756/1‑149 (MQ=255) cAGGGTTTTATCTGCATGTTTAACTTCAACAGCATCGTTGAGTGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGT‑CAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACa < 2:497486/149‑1 (MQ=255) cAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCATTGATCATAATAACCAGACCCATGATTTTTAAGT‑CAAACCACGCAGGAAAAACCACCGGGGCTTAATCAACAAGAGACa > 2:3001970/1‑149 (MQ=255) aGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTAACTTTGATCGTAATAACCAGACCGGTGATTTTTAAGT‑CAACGCCGGCAGGAACAACCACCGGTGCTTTAGCAACACGAGACaa > 1:4380932/1‑148 (MQ=255) gggTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGATTCAGCTCGCCTTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGT‑CAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACAtt < 2:4365872/149‑1 (MQ=255) gggTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTAAGT‑CAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACAtt > 2:230988/1‑149 (MQ=255) gTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCAGACCGTTGATTTTTAAGT‑CAACGCCGGCAGGAACAACGACCCGTGCTTTAGCAACACGAGACAattt > 2:3785554/1‑149 (MQ=255) ttttatCTGCATGTTTAACTTCAACCGAATCTTTTAGAGTACGAGTCAGCTCGCCGTTTTTACATTTGATCGTAATAACCTGACCGTTGTTTTTTACGT‑CAACGCCGGCTGGAACAACGACCGGTGCTTTAGCAACACGAGACAttttt < 1:3682057/147‑1 (MQ=255) tattatCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCTTTTTTACCTTTGATCTTAATAACCTGACCGTTGATTTTTCCGT‑CAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACAttttt < 1:1420883/149‑1 (MQ=255) tattatCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTTATAAACTGACCGTTGATTTTTACGT‑CAACGCCGGCCGGCACAACGACCGGTGCTTTAGCAACACGAGACAatttt > 2:1121936/1‑149 (MQ=255) tattatCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTAACTTTGATAGTAATAACCAGACCCTTTTTTTTTACGT‑CAAAGCCGGCAGGAACAACCACCGGTGCTTTAGCAAAACGAGACAttttt > 1:669876/1‑149 (MQ=255) attatCTGAATTTTTAACTTCAACAGCATCTTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTTATCTTAATAACCTTACCGTTGATTTTTACGT‑AAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACAtttttt < 1:1642019/149‑1 (MQ=255) ttatCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGT‑CAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTtc < 2:1423837/149‑1 (MQ=255) tCTGCTTGTTTAACTTCAACAGCATGGTTGAGAGTACGAGTCTGCTCGCCGTTTTTACCTTTTATCGTAATAACCTGACCGTTGATTTTTACTT‑CAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTtcctc < 2:3402796/149‑1 (MQ=255) tCTGCATTTTTAACTTAAACAGCATGGTTGAGAGTACGAGTCAGCTCGCCTTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGT‑CAACGCCGGCAGTAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTtcctc < 1:2173125/149‑1 (MQ=255) tCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGT‑CAACGCCGGCAGGAACCACGACCGGTGCTTTAGCAACACGAGACATTTTTtcctc < 2:2295340/149‑1 (MQ=255) tGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGT‑CAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCg > 2:1027515/1‑149 (MQ=255) tGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAAACTGACCGTTGATTTTTAAGT‑CAACGCCGGCAGGAACAACGACCGGTGCTTTATCAACACGAGACATTTTTTCCTCCg > 2:4021102/1‑149 (MQ=255) cttttttAACTTAAAAAGATTCTTTTTGAGTAGGTTTCAGCTGGCGTTTTTTACCTTTGTTCGTAATAACCTGACCGTTGTTTTTTACGT‑CAACGCCGGCTGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGAt < 1:2909545/145‑1 (MQ=255) ttttAAATTCAACAGCATCGTTGAGATTACGAGTCAGCTCGCGTTTTTTACCTTTGATCTTAATAACCTGACCTTTGATTTTTACGT‑CAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAg < 1:2455541/148‑1 (MQ=255) ttttAAATACAACAGCATGGTTGAGATTACGAGTCAGCTCGCCTTTTTTACATTTGATCGTAATAACCTGACGGTTTATTTTTACGT‑CAACGCCGGCTGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAg < 1:3738605/148‑1 (MQ=255) tttAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGT‑CAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAgg < 2:2793130/149‑1 (MQ=255) ttAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGT‑CAACGCCGGCAGGAACACCCACCCGTGCGTTAGCAACACGAGACAATTTTTCCTCCGATTAGGc > 2:186373/1‑149 (MQ=255) tAACTACAACCGCATGGTTTAGTGTACTCGACAGCTCGCGTTTTTTACCTTTTATCGTAATAACGTGACCGTTTTTTTTTACGA‑AACCGCCGGCCGTAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCt < 1:1857970/149‑1 (MQ=255) aCTACAACAGAATCGTTGTTTGTACGATTCAGCTCGCGTTTTTTACCTTTTATCTTAATACCCTGACGGTTTTTTTTTACGA‑CAACGCCGGCCGTAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTAc < 1:2731802/149‑1 (MQ=255) aCAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGT‑CAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCa > 2:3808566/1‑149 (MQ=255) aGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGT‑CAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGa < 1:1674610/149‑1 (MQ=255) gcatgtttGAGAGTACGAGTCAGCTCGCGGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGT‑CAACGCCGGCTGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGAt < 1:2375900/143‑1 (MQ=255) gCATCGTTGAGTGTACGAGTCAGCTCGCCGTTTTTACCTTTTATCGTAATAACCTGACGGTTGATTTTTACGT‑CAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGAt < 1:1289267/149‑1 (MQ=255) tggTTGAGAGTCCTTGTCCGCTCGCCTTTTTTACATTTGATCTTAATAACCTGACCTTTGATTTTACCGT‑CAACGCCGGCAGGAACCACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAAt < 1:3819468/147‑1 (MQ=255) tCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGT‑CAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAAt < 2:855583/149‑1 (MQ=255) gTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGT‑CAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTACTCCGATTAGGCTACGTAGCAGATAAttt > 2:594228/1‑149 (MQ=255) ttGTGAGTACGTGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTGCCGT‑CAACGCCGGCCGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTc < 1:918206/149‑1 (MQ=255) ttGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGT‑CAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTc < 2:1338909/149‑1 (MQ=255) tACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGT‑CAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGccacca < 2:3579651/149‑1 (MQ=255) tACGAGTCAGCTCGCCGTTTTTACCGTTGATCGTAATAACCTGACCGTTGATTTTTACGT‑CAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACAATTTTTCCTCCGATTATGCTACGTAGCAGATAATTTAGccacca > 2:1830133/1‑149 (MQ=255) aGTCAGCTCGCCTTTTTTACCTTTGATCGTAATAACCTGACGTTTTATTTTTACGA‑CAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGAc < 1:954646/149‑1 (MQ=255) aGTCAGCTCGCCGTTTTTACATTTTATCGTAATCACCTGACCTTTGATTTTTCCGT‑CAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGAc < 1:3167362/149‑1 (MQ=255) tCAGCTCGCCTTTTTTACCTTTTATCTTAATAACCTGACCTTTTATTTTTCCGT‑CAACGCCGGCTGTAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCa < 1:961510/149‑1 (MQ=255) gCTCGCCTTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGT‑CAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGcc < 2:3346855/149‑1 (MQ=255) cTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTTATTTTTACGT‑CAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCt < 2:2217860/149‑1 (MQ=255) ggctttttttACTTTTTATCTTTATAACCTGA‑CTTTTTTTTTTTCGTACAACGCGGGCTGTAACCACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTgg < 1:1151423/144‑1 (MQ=255) gCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGT‑CAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGgc > 2:1012570/1‑149 (MQ=255) gTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGT‑CAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGgcgcg > 1:3959567/1‑149 (MQ=255) tttttACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGT‑CAACGCCGGCAGTAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGgcgcgc < 1:176906/149‑1 (MQ=255) tttttACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGT‑CAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGgcgcgc < 2:4216794/149‑1 (MQ=255) ttttACCTTTGATCGTAATAACCTGACCGTTTATTTTTACGT‑CAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCt < 1:3649577/149‑1 (MQ=255) aCCTTTGATCGTAATAACCTGACCGTTGATTTTTACGT‑CAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCAc > 1:2715693/1‑149 (MQ=255) cTTTGATCGTAATAACCTGACCGTTGATTTTTACGT‑CAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGa > 1:2561799/1‑149 (MQ=255) cTTTGATCGTAATAACCTGACCGTTGATTTTTACGT‑CAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGa < 2:130728/149‑1 (MQ=255) attttATCGTAATAACCTGACCGTTGATTTTTATGT‑CAACGCCGGCAGCAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGa < 2:407973/148‑1 (MQ=255) | CCATTGAGTTCAGCAGGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGT‑CAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAG > CP009273/3439274‑3439570 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |