| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,498,214 | T→G | 11.1% | intergenic (+72/+80) | frlR → / ← yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,498,214 | 0 | T | G | 11.1% | 274.3 / 4.7 | 145 | intergenic (+72/+80) | frlR/yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| Reads supporting (aligned to +/- strand): ref base T (27/98); new base G (8/12); total (35/110) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.22e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 145 total aligned reads displayed.
AAACCGGTGCACGTCTCCGAACTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAA > CP009273/3498068‑3498361 | aaaCCGGTGCACGTCTCCGAACTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑Tc < 2:1395742/149‑1 (MQ=255)aaaCCGGTGCACGTCTCCGAACTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑Tc < 2:348586/149‑1 (MQ=255) aaCCGGTGCACGTCTCCGAACTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGAGGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑Tcc < 1:2237516/149‑1 (MQ=255) cACGTCTCCTAACTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCAccc < 2:483035/149‑1 (MQ=255) tctcCGAACTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TGCCCCCACCCaaaa > 2:2239036/1‑148 (MQ=255) gAACTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTGGCCCCCCCCCCAAAcccca > 1:4376704/1‑147 (MQ=38) gAACTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCctc‑‑t < 1:1513155/149‑1 (MQ=255) gAACTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCctc‑‑t < 1:1513285/149‑1 (MQ=255) gAACTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGGTGAATTTTACATCCCGTACGGT‑GCCCCCCCCCCAAAcccca > 1:4380451/1‑147 (MQ=38) aaCTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCCGCATCGCATCCGGCGATGCTGGCGCGGTGAATTTTACATCCCGTAC‑GG‑TGCCCACACCCAAAcccccac > 2:1020137/1‑145 (MQ=38) aaCTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TTCCCCCCCCCCAAcccacca > 2:3332284/1‑145 (MQ=39) aaCTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GG‑GGCCCGCCCCCCAAcccccaa > 2:414935/1‑145 (MQ=38) ctctTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑Tccc < 1:2327685/149‑1 (MQ=255) cttctGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCACACCCTAACCCAC‑‑TCCCCa > 2:2171313/1‑149 (MQ=255) gCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCGAAACCAC‑‑TCCCCAAAggg > 2:2126179/1‑149 (MQ=255) gcCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAg < 1:596957/149‑1 (MQ=255) aaTCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGCTGCTGGCGCGTTGAATTTTACATCCCGTAC‑GG‑TGCCCACCCCCGAACCCGC‑‑ACCCCCAAGGGGCGCgggg > 2:934614/1‑149 (MQ=38) aaTCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCGCACCCAATCCCTC‑‑ACCCCACAGGGGCGCgggg > 2:3617135/1‑149 (MQ=38) aaTCGCATCACCTTAACTATTGAGAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGGTGAATTTTACATCCCGTCC‑GT‑TCCCCCCCCCCCAACCCAC‑‑TCACCCAAGGGGCgcgtgg > 2:934629/1‑144 (MQ=37) aTCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGa < 1:81503/149‑1 (MQ=255) tCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGAc < 1:3151889/149‑1 (MQ=255) gCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GG‑TGGCCACACCCAAAACCACAACCCCCAAAGGCGCGggggccc > 1:1735091/1‑146 (MQ=25) cATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GTGGCCCCCCACCC‑AACCCCC‑‑ACCCCCAAAAGGCGGGGGGGcccg > 1:3598358/1‑147 (MQ=37) cATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGt < 1:1833643/149‑1 (MQ=255) cATCACCAGACCTCTGGATACTAACAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCCTCCGGCGATGCAGGCGCGATGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTCACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCgg < 2:1867051/149‑2 (MQ=37) aTCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGtt < 1:958138/149‑1 (MQ=255) aTCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GG‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGtt < 1:958158/149‑1 (MQ=255) cACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GG‑TGCCCACACCCCAACCCAA‑‑ACCCCAAAAGGGCGCGGGGGcccgtga > 2:2690357/1‑144 (MQ=37) cTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGTGGACCGTTCAGTa < 2:3201348/149‑1 (MQ=255) aaCTATTGATAATAACAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACgg < 1:845028/149‑1 (MQ=255) aaCTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TGCCCCCCCCCCAAAACAC‑‑ACCCCCCACGGGCGCGGGGGCCCGTCAggaacg > 2:530076/1‑144 (MQ=25) aaCTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TACCCAAACCCGAACCCAC‑‑ACCCCAAACGGGCGATGGGTCCCGTCAGTAAgg > 2:528839/1‑149 (MQ=37) tATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAAt < 2:3756353/149‑1 (MQ=255) tATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAAt < 2:3756704/149‑1 (MQ=255) tATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAAt < 2:3582097/149‑1 (MQ=255) ctcgaaaataaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAAtt < 1:4054774/143‑1 (MQ=255) ttGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAAttt < 2:3064016/149‑1 (MQ=255) ttGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GG‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAAttt < 1:2696059/149‑1 (MQ=255) taataaAAGACATGAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCt < 2:3506719/149‑1 (MQ=255) ataaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTg < 2:3213092/149‑1 (MQ=255) ataaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTg < 2:3090437/149‑1 (MQ=255) ataaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCGCACCCTAAACCAC‑‑TCCCCAAAGGGGCGAGGGGACCGGTCAGTACGGAATTTTGCGTg > 2:2199566/1‑149 (MQ=38) ataaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TACCCACACCCAAAACCAA‑‑AACCCCAACGGGCGAGGGGGCCCGTGAGTACCGAAATTatcatg > 2:1435977/1‑144 (MQ=21) aaaGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GG‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACg < 1:4042199/149‑1 (MQ=255) aaGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACgg < 2:3335745/149‑1 (MQ=255) gACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TGCCCACACCCAAACCCAC‑‑ACCCCAAAGGGGCGAGGGGACCGGTCAGTACGGAATTTTTCTTGACGGTg > 2:674966/1‑149 (MQ=38) gACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTg < 2:3192688/149‑1 (MQ=255) gACATGAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTACCCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTg < 2:1626262/149‑1 (MQ=255) aTTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GG‑TCCCCTCACCCAGACCCTC‑‑TCCCCACAGGGGCGCGGGGGCCGGGCCGGGCCGGATTTAGCTTGGCGGGGcga > 2:1953010/1‑147 (MQ=25) aCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCa < 1:1226794/149‑1 (MQ=255) aGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCAtt < 1:1467622/149‑1 (MQ=255) aGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCAtt < 1:1467696/149‑1 (MQ=255) gCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTaa < 1:610403/149‑1 (MQ=255) gCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTaa < 1:609945/149‑1 (MQ=255) gCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCACACCCTAACCCAC‑‑TCCCCAAATGGGCGGGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTaa > 2:1181498/1‑149 (MQ=255) gCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑GCCCCACACCCAAACCCAC‑‑AACCCCAAGGGGCGCGGGGCCCGGTCACTACCGAAATTAGCATGACGGTGCAATACacccaaaa > 2:333803/1‑142 (MQ=255) ccGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTaaa < 2:3903411/149‑1 (MQ=255) ccGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTaaa < 2:1108236/149‑1 (MQ=255) cGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCCAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAAt < 1:2305304/149‑1 (MQ=255) cGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAAt < 1:2305296/149‑1 (MQ=255) gATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAACGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATAc < 2:103685/149‑1 (MQ=255) aTAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACt < 2:323152/149‑1 (MQ=255) tAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCAAAACCAC‑‑TACCCAAAGGGGCGAGGGGACCGGTCAGTACGGAAATTATCTTGTCGGTGCTAACCAGCAATTAATAcag > 2:4388021/1‑147 (MQ=255) aGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GG‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGc < 1:1020137/149‑1 (MQ=255) tGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAAt < 1:1960650/149‑1 (MQ=255) cgcCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTACCCCTC‑‑TCCCCACAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATAc < 2:4142550/149‑1 (MQ=255) cAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATActct < 2:4310825/149‑1 (MQ=255) cAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATActct < 2:4309495/149‑1 (MQ=255) cAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATActct < 2:2811128/149‑1 (MQ=255) aacatcgcatcCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACtctc < 2:4397696/147‑1 (MQ=255) aGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACtctc < 1:303218/149‑1 (MQ=255) aGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCGCACCCAAACCCAC‑‑TACCCACAGGGGGGGGGGGACCCGTACGTACGGAAATTAGCGTGACGGGGGTATCCAGCAATAAATACAGGCAAAACactc > 2:3278230/1‑149 (MQ=255) tcgcatcCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GG‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGc < 1:3099988/149‑1 (MQ=255) gCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCgc < 2:2431044/149‑1 (MQ=255) gCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCgc < 2:2430919/149‑1 (MQ=255) aTGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCgcagc < 2:647125/149‑1 (MQ=255) cTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCAcc < 2:4164209/149‑1 (MQ=255) tGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCg < 1:1710041/149‑1 (MQ=255) tGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCg < 1:1710040/149‑1 (MQ=255) gcgcGTTGAATTTTACATCCCGTAC‑GG‑TCCCCTCACCCTAACCCTC‑‑TCCCCACAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGtc < 2:363213/149‑1 (MQ=255) gcgcGTATAATTTTACATCCCGTAC‑GT‑TCCCCTAACCAGAAACCTC‑‑TCCCCAAAGGGGCGAGTTGAACGTTCAGTACGGAATTTAGCTTGACGGAGCTATCCAGCATTAAATACTGGATATACTCTCACGCAAAATCCGCAGCACCGtc < 2:362778/149‑1 (MQ=255) gcgTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGtctc < 1:4008821/149‑1 (MQ=255) ttGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTc < 2:4380451/149‑1 (MQ=255) ttGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTc < 2:4376704/149‑1 (MQ=255) ttGAATTTTACATCCCGTAC‑GG‑TCCCCTCACCCTACCCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTc < 1:2179305/149‑1 (MQ=255) ttttACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGc < 1:1615188/149‑1 (MQ=255) ttttACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGc < 1:1614899/149‑1 (MQ=255) tttACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCt < 1:2381516/149‑1 (MQ=255) tttACATCCCGTAC‑GG‑TCCCCTCACCCTACCCCTC‑‑TCCCCACAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCt < 1:2755871/149‑1 (MQ=255) ttACCTCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTg < 1:1082389/149‑1 (MQ=255) ttACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGTTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTg < 2:2033026/149‑1 (MQ=255) cATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGTGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGa < 2:4125337/149‑1 (MQ=255) tCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGAtt < 2:3284087/149‑1 (MQ=255) tCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGAtt < 2:3060368/149‑1 (MQ=255) ccGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCg < 2:1240034/149‑1 (MQ=255) tAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCACAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGt < 2:2588314/149‑1 (MQ=255) tAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGt < 2:1205457/149‑1 (MQ=255) tAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATAATGGCAATACACTCACGCACAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGt > 2:2043193/1‑149 (MQ=255) c‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCACAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAACTCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTa < 2:1001377/149‑1 (MQ=255) c‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCACAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTa < 2:3220630/149‑1 (MQ=255) | AAACCGGTGCACGTCTCCGAACTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTAC‑GT‑TCCCCTCACCCTAACCCTC‑‑TCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAA > CP009273/3498068‑3498361 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |