| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC JC | CP009273 | 312,806 | IS2 (+) +5 bp | 14.0% | pseudogene (71‑75/684 nt) | ykgA ← | pseudogene, AraC family;putative regulator; Not classified; putative ARAC‑type regulatory protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 312806 = | 267 (0.930) | 38 (0.130) | 26/276 | NT | 12.1% | pseudogene (75/684 nt) | ykgA | pseudogene, AraC family;putative regulator; Not classified; putative ARAC‑type regulatory protein |
| ? | CP009273 | 1462167 = | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
| * | ? | CP009273 | = 312810 | 267 (0.930) | 49 (0.160) | 32/276 | NT | 15.0% | pseudogene (71/684 nt) | ykgA | pseudogene, AraC family;putative regulator; Not classified; putative ARAC‑type regulatory protein |
| ? | CP009273 | = 1463497 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
TTTTGCCTTCGCCCTTGCTATTTTTGATACACTTAGGGCCCAGGGTATAACGAAAATGTGCGATATGACAAAGAATTAACGGAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/312937‑312806‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTT > CP009273/1462167‑1462313 TTTTGCCTTCGCCCTTGCTATTTTTGATACACTTAGGGCCCAGGGTATAACGAAAATGTGCGATATGACAAAGAATTAACGGAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTATAT > 2:4580896/1‑149TTTTGCCTTCGCCCTTGCTATTTTTGATACACTTAGGGCCCAGGGTATAACGAAAATGTGCGATATGACAAAGAATTAACGGAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTATAT > 2:4580697/1‑149 CCCTTGCTATTTTTGATACACTTAGGGCCCAGGGTATAACGAAAATGTGCGATATGACAAAGAATTAACGGAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTATATTTCCAGACATC > 2:4429840/1‑149 CCTTGCTATTTTTGATACACTTAGGGCCCAGGGTATAACGAAAATGTGCGACATGACAAAGAATTAACGGAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTATATTTCCAGACATCT > 1:2070954/1‑149 CTTGCTATTTTTGATACACTTAGGGCCCAGGGTATAACGAAAATGTGCGATATGACAAAGAATTAACGGAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTATATTTCCAGACATCTG < 2:4373428/149‑1 CTTGCTATTTTTGATACACTTAGGGCCCAGGGTATAACGAAAATGTGCGATATGACAAAGAATTAACGGAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTATATTTCCAGACATCTG < 2:4373400/149‑1 CTTGCTATTTTTGATACACTTAGGGCCCAGGGTATAACGAAAATGTGCGATATGACAAAGAATTAACGGAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTATATTTCCAGACATCTG < 2:3146781/149‑1 GCTATTTTTGATACACTTAGGGCCCAGGGTATAACGAAAATGTGCGATATGACAAAGAATTAACGGAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTATATTTCCAGACATCTGTTA < 2:2112011/149‑1 ATTTTTGATACACTTAGGGCCCAGGGTATAACGAAAATGTGCGATATGACAAAGAATTAACGGAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTATATTTCCAGACATCTGTTATCA > 2:3141961/1‑149 TACACTTAGGGCCCAGGGTATAACGAAAATGTGCGATATGACAAAGAATTAACGGAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCC > 2:98835/1‑149 AGGGCCCAGGGTATAACGAAAATGTGCGATATGACAAAGAATTAACGGAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAA < 2:814197/149‑1 AGGGCCCAGGGTATAACGAAAATGTGCGATATGACAAAGAATTAACGGAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAA < 1:3299808/149‑1 AGGGCCCAGGGTATAACGAAAATGTGCGATATGACAAAGAATTAACGGAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAA < 1:3299810/149‑1 CCCAGGGTATAACGAAAATGTGCGACATGACAAAGAATTAACGGAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCC < 2:2070954/149‑1 CCAGGGTATAACGAAAATGTGCGATATGACAAAGAATTAACGGAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCG > 1:1256237/1‑149 CCAGGGTATAACGAAAATGTGCGATATGACAAAGAATTAACGGAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCG > 1:3853069/1‑149 CCAGGGTATAACGAAAATGTGCGATATGACAAAGAATTAACGGAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGAGTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCG > 2:1529505/1‑149 GGTATAACGAAAATGTGCGATATGACAAAGAATTAACGGAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGC > 1:4313399/1‑149 TATAACGAAAATGTGCGATATGACAAAGAATTAACGGAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCG < 1:1445891/149‑1 TATAACGAAAATGTGCGATATGACAAAGAATTAACGGAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCG < 1:1446022/149‑1 GAAAATGTGCGATATGACAAAGAATTAACGGAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATA > 2:1657892/1‑149 GATATGACAAAGAATTAACGGAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGC < 2:2950026/149‑1 AAAGAATTAACGGAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATA < 1:2593671/149‑1 AAAGAATTAACGGAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATA < 1:2593067/149‑1 ATTAACGGAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCA > 2:1204663/1‑149 TTAACGGAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTATATTTCCAGACATCTGTTATAACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAc > 1:557959/1‑148 GAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACT > 1:3340676/1‑149 ATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGC > 1:3328693/1‑149 GATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGAT < 1:5073319/149‑1 ATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCA < 2:1278841/149‑1 ATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCA < 1:5131001/149‑1 CAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTT < 1:4206463/149‑1 CAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTT < 2:3095844/149‑1 CAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTT < 2:3096004/149‑1 CAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAA < 1:3126675/149‑1 AGCTCCTGGAGTGGATTTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCC < 2:380071/149‑1 AGCTCCTGGAGTGGATTTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCC > 1:189183/1‑149 GTGGATTTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGT > 1:3299110/1‑149 gTTTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTT < 1:582656/148‑1 TTTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTT > 1:1082134/1‑149 TTTTGCCTTCGCCCTTGCTATTTTTGATACACTTAGGGCCCAGGGTATAACGAAAATGTGCGATATGACAAAGAATTAACGGAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/312937‑312806‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTT > CP009273/1462167‑1462313 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |