| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 104,042 | A→T | 5.7% | intergenic (+81/‑150) | lpxC → / → secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 104,042 | 0 | A | T | 5.7% | 663.1 / 8.5 | 184 | intergenic (+81/‑150) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| Reads supporting (aligned to +/- strand): ref base A (7/165); new base T (10/2); total (17/167) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.25e-10 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 185 total aligned reads displayed.
TGTGACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTGAATATGATCGGGATGGCAAT > CP009273/103895‑104188 | tgtgACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGaa < 2:2072583/149‑1 (MQ=255) tgACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑GTTTTTTTGTAtt > 2:1854500/1‑149 (MQ=255) gACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAAttt < 1:1096877/149‑1 (MQ=255) gACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAAttt < 1:4742531/149‑1 (MQ=255) aCCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAAtttt < 1:4030741/149‑1 (MQ=255) aCCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAAtttt < 1:710877/149‑1 (MQ=255) ccTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTta < 2:3261122/149‑1 (MQ=255) ccTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTta < 2:1223040/149‑1 (MQ=255) cTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTtat < 1:1174684/149‑1 (MQ=255) cTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑GTTTTTTTTTTTTTtat > 2:2596383/1‑149 (MQ=255) cAGGACGACGCAGAACTGCCGTTGGCCTTCAACGCGCCTTCCGCTGTACGGGCATACCGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTTAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAaga < 1:941416/149‑1 (MQ=255) cAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAaga < 1:4934406/149‑1 (MQ=255) ggACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑TGGTTTTTTTTAATTTTTATTaga > 2:182640/1‑149 (MQ=255) ggACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑GTTTTTTTGTATTTTTTAATAGc > 2:728244/1‑149 (MQ=255) acgacgCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCta < 1:5197894/149‑1 (MQ=255) acgacgCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCta < 1:1429144/149‑1 (MQ=255) cgacgCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCtat < 2:116058/149‑1 (MQ=255) gacgCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCtat‑a < 1:2492377/149‑1 (MQ=255) gCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑aaaa < 1:4952418/149‑1 (MQ=255) gCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑aaaa < 1:2350935/149‑1 (MQ=255) aaCTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACg < 2:4458020/149‑1 (MQ=255) cTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑GTTTTTTTTTATTTTATTATATATAT‑aaaaaaaagt > 2:4192940/1‑145 (MQ=255) tGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTg < 2:656992/149‑1 (MQ=255) tGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTg < 2:4087198/149‑1 (MQ=255) cTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGt < 2:4283264/149‑1 (MQ=255) cTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGt < 1:4559336/149‑1 (MQ=255) cTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGt < 1:4366787/149‑1 (MQ=255) tCAAAGCGCCTTCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGttt < 1:561596/149‑1 (MQ=255) cAAAGCGCCTTCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGtttt < 1:2737293/149‑1 (MQ=255) aaaGCGCCTTCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTc < 1:3479896/149‑1 (MQ=255) cgcCTTCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTaa < 1:146340/149‑1 (MQ=255) ttCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCAc < 1:2366723/149‑1 (MQ=255) ttCAGCTGTACTGGCAGAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCAc < 1:4363103/149‑1 (MQ=255) tCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAACTCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACt < 1:560528/149‑1 (MQ=255) tCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACt < 2:1493953/149‑1 (MQ=255) cAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACtt < 2:4384606/149‑1 (MQ=255) aGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACttt < 1:149369/149‑1 (MQ=255) aGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACttt < 2:3706951/149‑1 (MQ=255) aGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACGGGCAAATCGGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACttt < 2:3706419/149‑1 (MQ=255) tGTACTGGCATAACGCCATTTATAATGTCGTATAAAATTCGACTGGCAAATCTGGCAAACTCCCCGGCCAGGTGAACCAGTAG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTcc < 1:2158003/149‑1 (MQ=255) tGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTcc < 1:2157741/149‑1 (MQ=255) tACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGc < 1:2198711/149‑1 (MQ=255) ggCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACaa < 2:2049630/149‑1 (MQ=255) gCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAAc < 1:4049437/149‑1 (MQ=255) cATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACt < 1:1967033/149‑1 (MQ=255) tAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTa < 1:4420912/149‑1 (MQ=255) aCGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATc < 1:793821/149‑1 (MQ=255) gACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTTTATTTTTTTATATCTAT‑AAAAAAAGGTGGGAAAGCGGTTTTATTTAGGACGTTTAAGGACAAcgaatatt > 2:434170/1‑142 (MQ=255) gACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCtt < 1:3809230/149‑1 (MQ=255) gACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCtt < 1:2931512/149‑1 (MQ=255) cATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCa < 2:1177913/149‑1 (MQ=255) aTTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCAt < 1:228772/149‑1 (MQ=255) tttATACGGTCTTAAAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCT‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCAtt < 2:4570181/149‑1 (MQ=255) tataCTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCg < 1:1266616/149‑1 (MQ=255) ctaaaaaaaTTCGACTGCAAAAACAGGCACACTATCCGGCCAGGTTAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTgg < 2:3235749/144‑1 (MQ=255) cGTATAACATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑‑‑‑TTTTTTTTGATTTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTCCTGTGGa < 1:2246406/149‑1 (MQ=255) gTATAAAATTCGTATTGAAAATCTGTCACTCTCTCCGGCCAGTTGAACCAGTCG‑T‑‑TTTTTTTTTAATTTTATAAGAGCTAT‑AAAAAAAGGTGCGAACGCTTTTTTCTTAAGCACTTTTCAGCACAACTTATCTTCATTCGTGCTGTGGa < 1:747865/149‑1 (MQ=255) gTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGa < 1:747757/149‑1 (MQ=255) tataAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGAc < 1:2432241/149‑1 (MQ=255) aaaaTTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGc < 1:3435605/149‑1 (MQ=255) aTTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAgg < 1:2456196/149‑1 (MQ=255) aTTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAgg < 1:1048171/149‑1 (MQ=255) ttCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAGGc < 2:2645840/149‑1 (MQ=255) tccGACTGGCAACTCTGCCCCTCACTCGGTCCAGTTTAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACTGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAGGc < 2:4094797/147‑1 (MQ=255) cGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAGGCtt < 1:4511462/149‑1 (MQ=255) cGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAGGCtt < 1:4887616/149‑1 (MQ=255) cTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAGGCTTTaa < 2:3927744/149‑1 (MQ=255) tGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAGGCTTTAAt < 2:188650/149‑1 (MQ=255) aaTCTGGCACTCTCTCCGGCCAGGTGAACCAGTCGTT‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAGGCTTTAATGATa < 1:1919512/149‑1 (MQ=255) tCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAGGCTTTAATGATAAGa < 2:1195950/149‑1 (MQ=255) tGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGTATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAGGCTTTAATGATAAGAtt < 2:4969326/149‑1 (MQ=255) cACTCTCCCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAGGCTTTAATGATAAGATTtgt < 2:3540880/149‑1 (MQ=255) ccccGGGCAGGTTTACCATTTC‑T‑‑TTTTTTTTGTATTTTTTTATTTCCAAAAAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAGGCTTTAATGATAAGATTTGTGCGCt < 2:2556171/147‑1 (MQ=255) ggCCAGGTGAACCAGTCT‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAGGCTTTAATGATAAGATTTGTGCGCTAAATa < 2:2233732/149‑1 (MQ=255) ccAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAGGCTTTAATGATAAGATTTGTGCGCTAAATACg < 2:4914968/149‑1 (MQ=255) cAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGt < 2:85020/149‑1 (MQ=255) ggTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGttt < 1:4665747/149‑1 (MQ=255) ggTGAACCAGTCG‑‑‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTg < 2:3828357/149‑1 (MQ=255) ggTGAACCAGTCG‑‑‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTg < 2:4807103/149‑1 (MQ=255) tGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTGa < 2:4572349/149‑1 (MQ=255) aCCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTGAata < 2:2765448/149‑1 (MQ=255) aCCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTGAata < 1:23307/149‑1 (MQ=255) ccAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTGAatat < 1:5191310/149‑1 (MQ=255) cAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTGAATATg < 1:5147490/149‑1 (MQ=255) aaGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTGAATATg < 1:4502693/148‑1 (MQ=255) gTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTGAATATGAt < 2:1979737/149‑1 (MQ=255) gTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTGAATATGAt < 2:192109/149‑1 (MQ=255) tCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTGAATATGATc < 1:1030296/149‑1 (MQ=255) tCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTGAATATGATc < 1:1030316/149‑1 (MQ=255) tCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTATGGACTGCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTGAATATGATc < 2:2646188/149‑1 (MQ=255) cG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTGAATATGATCg < 2:123631/149‑1 (MQ=255) g‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTGAATATGATCgg > 1:253461/1‑149 (MQ=255) tttttttGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTGAATATGATCGGGAt < 1:3164989/149‑1 (MQ=255) tttGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTGAATATGATCGGGATGGCa < 1:2983803/149‑1 (MQ=255) tttGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTGAATATGATCGGGATGGCa < 1:2236233/149‑1 (MQ=255) tttGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTACAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTGAATATGATCGGGATGGCa > 1:1861255/1‑149 (MQ=255) ttGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTGAATATGATCGGGATGGCaa < 1:5167364/149‑1 (MQ=255) ttGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTGAATATGAGCGGGATGGCaa < 2:4835591/149‑1 (MQ=255) tGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTGAATATGATCGGGATGGCAAt < 1:2027895/149‑1 (MQ=255) tGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAAAGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTGAATATGATCGGGATGGCAAt < 1:83485/149‑1 (MQ=255) | TGTGACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG‑T‑‑TTTTTTTTGAATTTTATAAGAGCTAT‑AAAAAACGGTGCGAACGCTGTTTTCTTAAGCACTTTTCCGCACAACTTATCTTCATTCGTGCTGTGGACTGCAGGCTTTAATGATAAGATTTGTGCGCTAAATACGTTTGAATATGATCGGGATGGCAAT > CP009273/103895‑104188 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |