| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 910,654 | C→G | 5.0% | intergenic (‑341/+154) | ybjE ← / ← aqpZ | putative transporter/aquaporin Z |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 910,654 | 0 | C | G | 5.0% | 409.6 / 3.7 | 141 | intergenic (‑341/+154) | ybjE/aqpZ | putative transporter/aquaporin Z |
| Reads supporting (aligned to +/- strand): ref base C (81/52); new base G (5/3); total (86/55) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 141 total aligned reads displayed.
CGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTGG‑CCGCCCCC‑TGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCAG > CP009273/910507‑910793 | cGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCa < 1:437797/149‑1 (MQ=32) ggtCCCGGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTGACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑g < 2:3272176/147‑1 (MQ=12) ttCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑gg < 1:5197055/149‑1 (MQ=32) tCCCTGAAGGCCGGGGCAGCCCACCTGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑ggg < 2:1315661/149‑1 (MQ=17) tCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑ggg < 2:1315687/149‑1 (MQ=32) tCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑ggg < 2:2042177/149‑1 (MQ=32) tCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑ggg < 2:2042187/149‑1 (MQ=32) cccTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑gggg < 1:730181/149‑1 (MQ=32) cccTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑gggg < 2:4996656/149‑1 (MQ=32) cccTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑gggg > 2:4602045/1‑149 (MQ=32) cccTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑gggg > 1:3827242/1‑149 (MQ=32) ccTGACGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑ggggg < 1:4857175/149‑1 (MQ=17) cTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGggc < 2:2282873/149‑1 (MQ=32) cTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGggc < 1:3211110/149‑1 (MQ=32) gAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGggcgg > 2:2152917/1‑149 (MQ=32) gAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGAGTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGggcgg > 2:2152484/1‑149 (MQ=17) aaGGCCGGGGCAGCCCCCATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATACGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGggcggc < 2:3942516/149‑1 (MQ=17) aaGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGggcggc < 1:3980059/149‑1 (MQ=32) aaGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGggcggc < 2:3911890/149‑1 (MQ=32) aaGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑‑GGggcggcg > 1:4468248/1‑149 (MQ=17) aGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGggcggcg > 2:4783259/1‑149 (MQ=32) aGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGggcggcg > 2:42390/1‑149 (MQ=32) ggCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGggcggcgg > 2:5028541/1‑149 (MQ=32) ggCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGggcggcgg > 2:4811027/1‑149 (MQ=32) ggCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGATTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑‑GGggcggcggc < 2:1213942/149‑1 (MQ=12) ccGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGgcggcggc‑g < 1:4550667/149‑1 (MQ=32) cGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑Ga < 1:3665968/149‑1 (MQ=32) ggggCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGGC‑GGGGgcggcggc‑ggt > 1:2629123/1‑147 (MQ=12) ggggCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑Gag > 2:582687/1‑148 (MQ=17) gggCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GAtt < 2:2478796/149‑1 (MQ=32) gCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑‑GGGGCGGCGGC‑GATTGg‑c < 2:1602911/149‑1 (MQ=17) gCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTGg‑ccg > 1:278194/1‑149 (MQ=32) gCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTGg‑ccg > 2:3634975/1‑149 (MQ=32) cccACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTGg‑ccgc < 2:3838946/149‑1 (MQ=32) ccACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑‑GGGGCGGCGGC‑GATTGG‑CCGccc < 2:915479/149‑1 (MQ=17) ccACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGGTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTGg‑ccgcc < 2:3624473/149‑1 (MQ=17) cacaTGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTGG‑GCGccc > 1:1143886/1‑149 (MQ=17) cacaTGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTGG‑CCGccc < 1:4791552/149‑1 (MQ=32) caTGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGGAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTGG‑CCGccccc < 2:558672/149‑1 (MQ=17) caTGGAGGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTGG‑CCGccccc < 2:4127314/149‑1 (MQ=17) aTGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGGCGGCGGC‑GATTGG‑CCGccccc < 1:640038/149‑1 (MQ=17) tGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCT‑GGGGGCGGCGGC‑GATTGG‑CCGCCCCC‑Tg < 2:4608965/149‑1 (MQ=17) tGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTGG‑CCGcccccag > 2:4514281/1‑147 (MQ=17) tGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTGG‑CCGCCCCC‑Tg < 2:4608935/149‑1 (MQ=32) ggATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTGG‑CCGCCCCC‑Tgc > 2:2502171/1‑149 (MQ=32) aTGTGGGCTGAGGGCGCGTTTTACAGGGCTGTTACCTCGCGCCCGCCCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTGG‑CCGCCCCC‑Tgcgc > 2:1197967/1‑149 (MQ=17) aTGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGAAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTGG‑CCGCCCCC‑Tgcgc < 2:1294762/149‑1 (MQ=17) tgtgGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑CGGGGCGGCGGCGGATTGA‑CCCCCCCC‑tcgcc > 1:2234051/1‑145 (MQ=11) gggCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCCGAGCCCGGGGGTGGC‑GGGGGCGGCGGC‑GCTTGG‑CCGCCCCC‑CGCGCGCCCCCAgcgc > 1:1780051/1‑149 (MQ=11) gggCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGAGTTTGTTCGCCAGAGCCCGGGGGTGGC‑GGGGGGGGCGGC‑GCGTGG‑GCGCCCCC‑CGCGCCCGCCGTgcgc > 1:1780033/1‑149 (MQ=11) gcgTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCCGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GCTTGG‑CCCCCCCC‑AGCGCCCGCCCTGCGccccg > 1:1031675/1‑146 (MQ=11) gTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTGG‑CCGCCCCC‑TGCGCGCTCCATGCGCCAGTgg > 1:4746554/1‑149 (MQ=17) gTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTGG‑CCGCCCCC‑AGCGCGCTCCGTGCGCCAGTgg > 2:2048374/1‑149 (MQ=17) ttttACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGAGTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTTG‑CCGCCCCC‑AGCGCGCGCCTTGCGCCCGGGGc > 1:4445363/1‑149 (MQ=11) cAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTGG‑CCGCCCCC‑TGCGCGCTCCATGCGCCACTGGCAatat > 2:2351382/1‑149 (MQ=255) cAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GAGTGG‑CCGCCCCC‑TGCGCGCTCCTTGCGCCAGGGGCAatat > 2:2350887/1‑149 (MQ=255) aGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTTG‑CCGCCCCC‑AGCGCGCTCCTGGCGCCACTGGCAaaatt > 1:545330/1‑148 (MQ=11) gATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGAGTTTGTTCGCCAGAGCCCGGGGGTGCA‑AGGGGCGGCGGC‑GCTTGG‑GCCCCCCC‑AGCCCGCCCCAGTCGCCACTGGCCatattgtg > 1:3584572/1‑145 (MQ=11) aTGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTGG‑CCGCCCCC‑AGCGCGCTCCATGCGCCAGTGGCAATAtttttc > 2:3960570/1‑147 (MQ=255) tGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTTG‑CCGCCCCC‑AGCGCGCTCCGTTCGCCAGGGGCAATATGTTGCt > 1:4247991/1‑149 (MQ=14) tGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑‑GGGGCGGCGGC‑GATTGG‑CCGCCCCC‑AGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCtt > 1:4903212/1‑149 (MQ=255) tGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGGTCGCCAGAGCCCGGGGGTGCA‑‑GGGGCGGCGGC‑GATGGG‑CCGCCCCC‑TGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCtt > 1:4903237/1‑149 (MQ=255) tCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATGTTGTTCGCCAGAGCCCGGGGGTGCACGGGGGGGGCGG‑‑GGGTGG‑GCGGCCCC‑GGCGCGGGCCGTGCGCCCGGGGGAAAATGTTGGttgtggcc > 1:873145/1‑143 (MQ=2) gcCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTGG‑CCGCCCCC‑TGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGaa > 2:4635240/1‑149 (MQ=255) gcCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTGG‑CCGCCCCC‑TGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGaa > 2:3267202/1‑149 (MQ=255) gcCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑‑GGGGCGGCGGC‑GATTGG‑CCGCCCCC‑TGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGaaa < 2:3081540/149‑1 (MQ=255) gACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTGG‑CCGCCCCC‑AGCGCGCACCAAGCGCCCGTGGCAAAATGTTGCTTATCTAATGAAAGGa > 2:3907922/1‑149 (MQ=14) aCCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGGC‑GGGGGGGGCGGC‑GGTGGG‑GCCCCCCC‑CGCGCGCGCCATGCGCCCCGGGCCAAATTTTGCTTAGCTCCAGAAAggcg > 1:3131390/1‑147 (MQ=11) aCCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTGG‑CCGCCCCC‑TGCGCGCTCCTTGCGCCAGTGGCAAAATGTTTCTTAGCTCATGAAAGGAg > 2:2561986/1‑149 (MQ=255) aCCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTGG‑CCGCCCCC‑TGCGCGCTCCTTGCGCCAGTGGCAAAATGTTGCTTAGCTCATGAAAGGAg > 2:4879141/1‑149 (MQ=255) ccGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑‑GGGGCGGCGGC‑GATTGG‑CCGCCCCC‑TGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAgcgc < 1:2502335/149‑1 (MQ=255) ccGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑‑GGGGCGGCGGC‑GATTGG‑CCGCCCCC‑TGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAgcgc < 1:2502310/149‑1 (MQ=255) ggTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCCGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GCTTGG‑GCGCCCCC‑CGCCCGCGCCCTGCGCCCGGGGCAAAAATTTTATTATCTCAAGAAAGGAGCGca > 1:1885772/1‑149 (MQ=14) ggTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTGG‑CCGCCCCC‑TGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTATCTCATGAAAGGAGCGca > 2:5003265/1‑149 (MQ=255) gTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTGG‑CCGCCCCC‑TGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGcaa > 2:3794060/1‑149 (MQ=255) ccGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑‑GGGGCGGCGGC‑GATTGG‑CCGCCCCC‑TGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAga < 2:4468248/149‑1 (MQ=255) cGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTTG‑CCCCCCCC‑AGCGCCCACCTTGCGCCACTGGCAATATTTTTCTTATCTCCTGAAAGGAGCGcaacaaca > 1:682620/1‑147 (MQ=17) cGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTGG‑CCGCCCCC‑AGCCCGCTCCGTGCGCCCCTGGCAAAAAGTTTCGTAGCTCCAGACAGGAGCGcaacaaca > 1:2898058/1‑147 (MQ=14) tAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑‑GGGGCGGCGGC‑GATTGG‑CCGCCCCC‑TGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAgatga < 2:1081640/149‑1 (MQ=255) aGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GAATGG‑CCGCCCCC‑CGCGCCCACCATGCGCCAGTGGCAAAATTTTTCTTATCTCATGAAAGGAGCGCAACAAgatgat > 1:2162586/1‑149 (MQ=17) aGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑‑GGGGCGGCGGC‑GATTGG‑CCGCCCCC‑AGCGCGCTCCTTGCGCCAGTGGCAATATTTTTCTTAGCTCATGAAAGGAGCGCAACAAGatgatg > 1:4426018/1‑149 (MQ=255) gggATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTGG‑CCGCCCCC‑AGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGatgatg > 2:853812/1‑149 (MQ=255) gATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GCTTGG‑CCGGCCCC‑GGCGCGCTCCTTGCGCCACTGGCAAAAAGTTGCATATCTAATGAAAGGAGCGCAACAAGATGATGaa > 2:1830634/1‑149 (MQ=17) tAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGGGGCGGC‑GAATTG‑CCGCCCCC‑AGCGCCCTACATGCGCCCCTGGCAATATGTTTCTTAAGACAAGTAAGGAGCGCAACAAAATTATTAATc > 1:3268345/1‑149 (MQ=14) ggCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GCTTGG‑CCGCCCCC‑TGCGCGCTCCATGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATaa > 2:1048402/1‑149 (MQ=255) aCCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTGG‑CCGCCCCC‑AGCGCGCGCCGTGCGCCACTGGCAATATTTTTCTTATCTCAAGAAAGGAGCGCAACAAGAATATGAATAAACAAATaacaa > 1:3460884/1‑149 (MQ=18) ccGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTGG‑CCGCCCCC‑TGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATaacaac > 2:2942126/1‑149 (MQ=255) cgcgCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTGG‑CCGCCCCC‑AGCGCGCTCCTTGCGCCAGTGGCAAAATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAacaaca > 2:3179443/1‑149 (MQ=255) cgATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTGG‑CCGCCCCC‑TGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGAAGATGAATCAACATATAACAACATCTTaaaaaa > 2:1179090/1‑149 (MQ=255) cgATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTGG‑CCGCCCCC‑AGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATTATGAATCAACATATAACAACATCTTaaaaaa > 2:3775216/1‑149 (MQ=255) cgATTTTGTTCGCCAGAGCCCGGGGGTGCA‑‑GGGGCGGCGGC‑GATTGG‑CCGCCCCC‑TGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTaaaaaaa < 2:4534449/149‑1 (MQ=255) aTTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTGG‑CCGCCCCC‑TGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGCAAGGAGCGCAACAATATGATGAATCAACATATAACAACAACATaaaaaaat > 2:104132/1‑148 (MQ=255) ttGTTCGCCAGAGCCCGGGGGTGCA‑‑GGGGCGGCGGC‑GATTGG‑CCGCCCCC‑TGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCt < 1:2712406/149‑1 (MQ=255) gTTCGCCAGAGCCCGGGGGTGCC‑GGGGGCGGCGGC‑GCTTGG‑CCGCCCCC‑AGCGCGCTCCTTGCGCCCGTGGCAAGAAGTTGCTTATGTCATGAAAGGAGCGCAACAATAATATGAATAAACATATAAAAACAACATAAAAAAAGGCCTg > 1:1122796/1‑149 (MQ=21) gTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTGG‑CCGCCCCC‑TGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTg > 2:1119205/1‑149 (MQ=255) gTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTGG‑CCCCCCCC‑AGCGCGCGCCATGCGCCAGTGGCAAAATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATTATGAATCAACAAATAACAACATCTTAAAAAAAGGccag > 1:3718663/1‑147 (MQ=25) gCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTGG‑CCGCCCCC‑TGCGCGCTCCTTGCGCCAGTGGCAATATTTTGCTTAGCTCATGAAAGGAGCGCAACAATATGATGAATCAACATATAACAACATCATAAAAAAAGTCCTGACAt > 2:1105895/1‑149 (MQ=255) cAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTGG‑CCGCCCCC‑AGCGCGCTCCTTGCGCCAGTGGCAATATTTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCATAAAAAAAGGACTGACAATa > 2:2340488/1‑149 (MQ=25) ggggggggTGGG‑GGGGGGGGGGGG‑GGTGGGCCCCCCCCC‑CCCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGcc < 1:2971218/146‑1 (MQ=255) cggggggTGCT‑GGGGGCGGGGGC‑‑TTTGG‑CCCCCCCCGTGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCAg < 2:3386661/147‑1 (MQ=38) | CGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCA‑GGGGGCGGCGGC‑GATTGG‑CCGCCCCC‑TGCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCAG > CP009273/910507‑910793 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |