| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,232,720 | C→A | 5.7% | intergenic (‑23/‑307) | ycgB ← / → dadA | SpoVR family stationary phase protein/D‑amino acid dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,232,720 | 0 | C | A | 5.7% | 1202.3 / 35.2 | 309 | intergenic (‑23/‑307) | ycgB/dadA | SpoVR family stationary phase protein/D‑amino acid dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base C (157/134); new base A (4/13); total (161/148) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.22e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
Only 100 of 320 total aligned reads displayed.
ATCCAGCCGGTAGAGTTTCGCCACCCGGTCTATCTCTGCCAGATAAACATCCAGCAGGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCACTAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAAGGGCGTTC > CP009273/1232572‑1232868 | ccAGCCGGTAGAGTTTCGCCACCCGGTCTATCTCTGCCAGATAAACATCCAGCAGGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGgcgc < 2:4083420/149‑1 (MQ=255) aGCCGGTAGAGTTTCGCCACCCGGTCTATCTCTGCCAGATAAACATCCAGCAGGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGctc < 2:2405560/149‑1 (MQ=255) aGCCGGTAGAGTTTCGCCACCCGGTCTATCTCTGCCAGATAAACATCCAGCAGGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGctc > 2:4800414/1‑149 (MQ=255) aGCCGGTAGAGTTTCGCCACCCGGTCTATCTCTGCCAGATAAACATCCAGCAGGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGctc < 2:2656801/149‑1 (MQ=255) gCCGGTAGAGTTTCGCCACCCGGTCTATCTCTGCCAGATAAACATCCAGCAGGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGctct > 1:721062/1‑149 (MQ=255) gagTTTCGCCACCCGGTCTATCTCTGCCAGATAAACATCCAGCAGGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCtgtgtg > 1:2943757/1‑149 (MQ=255) gCCACCCGGTCTATCTCTGCCAGATAAACATCCAGCAGGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCAcc < 1:1639610/149‑1 (MQ=255) cACCCGGTCTATCTCTGCCAGATAAACATCCAGCAGGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCAGTGTTGTCGGCGCTCTCTGTGTGGAGCACCTc > 1:4457211/1‑149 (MQ=255) aCCCGGTCTATCTCTGCCAGATAAACATCCAGCAGGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCa < 1:3301796/149‑1 (MQ=255) cccGGTCTATCTCTGCCAGATAAACATCCAGCAGGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGAGCTCTCTGTGTGGAGCACCTCAt < 1:3088394/149‑1 (MQ=255) ccGGTCTATCTCTGCCAGATAAACATCCAGCAGGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCAtt < 1:1333308/149‑1 (MQ=255) ccGGTCTATCTCTGCCAGATAAACATCCAGCAGGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCAtt < 1:625663/149‑1 (MQ=255) cGGTCTATCTCTGCCAGATAAACATCCAGCAGGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCAttt < 2:1571848/149‑1 (MQ=255) cGGTCTATCTCTGCCAGATAAACATCCAGCAGGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCAttt > 2:4845235/1‑149 (MQ=255) gTCTATCTCTGCCAGATAAACATCCAGCAGGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCa > 2:5162625/1‑149 (MQ=255) tCTATCTCTGCCAGATAAACATCCAGCAGGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCaa < 2:4238049/149‑1 (MQ=255) tCTATCTCTGCCAGATAAACATCCAGCAGGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCaa < 2:2564399/149‑1 (MQ=255) tctcTGCCAGATAAACATCCAGCAGGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCCTACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCAt > 1:4615446/1‑149 (MQ=255) ctctGCCAGATAAACATCCAGCAGGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATa > 2:3257373/1‑149 (MQ=255) gCCAGATAAACATCCAGCAGGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAac > 1:2842716/1‑149 (MQ=255) ccAGATAAACATCCAGCAGGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAaca > 1:389678/1‑149 (MQ=255) aGATAAACATCCAGCAGGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATGGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATATAACAcc > 2:4298904/1‑149 (MQ=255) aaaCATCCAGCAGGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGtt < 1:3172544/149‑1 (MQ=255) aaCATCCAGCAGGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTa > 1:1483866/1‑149 (MQ=255) tCCAGCAGGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTaaaaa < 2:3483760/149‑1 (MQ=255) tCCAGCAGGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGAGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTaaaaa < 1:2706447/149‑1 (MQ=255) ccAGCAGGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAAc < 2:798515/149‑1 (MQ=255) ccAGCAGGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAAc > 1:4404139/1‑149 (MQ=255) ccAGCAGGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAAc < 1:2167327/149‑1 (MQ=255) cagcagGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAAcc < 1:336971/149‑1 (MQ=255) cagcagGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAAcc > 1:2155630/1‑149 (MQ=255) agcagGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACcg > 2:1976756/1‑149 (MQ=255) gcagGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACcgc > 2:3743007/1‑149 (MQ=255) gcagGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACcgc > 1:3671446/1‑149 (MQ=255) gcagGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACcgc > 2:4956023/1‑149 (MQ=255) gcagGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCATTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGAGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACcgc < 1:1010100/149‑1 (MQ=255) cagGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACcgcg < 2:1118177/149‑1 (MQ=255) agGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGt > 2:1020712/1‑149 (MQ=255) agGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGAGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGt < 2:2310553/149‑1 (MQ=255) ggTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTc > 2:2034254/1‑149 (MQ=255) aCGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGga < 2:3522455/149‑1 (MQ=255) cGTCCTGTCGGGTCCATCGCTCATACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCTCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGgag < 1:1907184/149‑1 (MQ=255) gTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGgaga > 1:1185009/1‑149 (MQ=255) ccAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAAt < 2:584764/149‑1 (MQ=255) ccAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAAt > 1:790711/1‑149 (MQ=255) gTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAAtttt > 1:1027268/1‑149 (MQ=255) gTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAAtttt > 2:3639707/1‑149 (MQ=255) gTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAAtttt < 1:2508230/149‑1 (MQ=255) cGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAAtttttt < 2:1887134/149‑1 (MQ=255) gggTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAAttttttt < 2:4463631/149‑1 (MQ=255) gggTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAAttttttt < 2:4482635/149‑1 (MQ=255) gTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATAAGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAAAAGCTTCGACGGAGAATTTTTTTCt > 2:3337332/1‑149 (MQ=255) tCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCtt < 2:1498678/149‑1 (MQ=255) tCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCtt > 1:4758413/1‑149 (MQ=255) ccATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGAGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCttt < 2:1992499/149‑1 (MQ=255) cGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGa < 2:1935477/149‑1 (MQ=255) cGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGa < 2:3017154/149‑1 (MQ=255) gCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGAt < 2:2126415/149‑1 (MQ=255) cTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGAtt < 1:5040594/149‑1 (MQ=255) cTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGAtt < 2:5000353/149‑1 (MQ=255) aaaCGTGTGGTGTCCTTATTCATAGAATCTATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCAACTCATTTAAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTATTTTCTTTGAGATTTCt > 2:4901/1‑149 (MQ=255) aaCGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCtt > 2:1727434/1‑149 (MQ=255) cGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCttat < 2:4003697/149‑1 (MQ=255) gtgtGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCttatt < 1:3234150/149‑1 (MQ=255) gtgtGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCttatt > 1:3590146/1‑149 (MQ=255) gtggtgTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTtattat > 1:30357/1‑149 (MQ=255) gtggtgTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTtattat > 2:412508/1‑149 (MQ=255) tggtgTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATc > 2:291753/1‑149 (MQ=255) ggtgTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCa > 2:1959188/1‑149 (MQ=255) ccTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTg > 1:4084627/1‑149 (MQ=255) ccTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGAGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTg < 2:2819602/149‑1 (MQ=255) ttCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCACt < 1:1792064/149‑1 (MQ=255) cATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCACTaa > 1:4600906/1‑149 (MQ=255) aTAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCACTAAt > 2:1646156/1‑149 (MQ=255) tAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGAGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCACTAATc < 2:4671049/149‑1 (MQ=255) tAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGAGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCACTAATc < 2:388160/149‑1 (MQ=255) gAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCACTAATCCg > 1:2024717/1‑149 (MQ=255) atcgatcgTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCACTAATCCGCt < 2:1274532/149‑1 (MQ=255) atcgatcgTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCCGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCACTAATCCGCt > 2:2736356/1‑149 (MQ=255) atcgatcgTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTATGTGTGGAGCACCTCATTTAAATCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGACATTTCTTAATATCATAGTGACACTaaaactct > 1:3518832/1‑143 (MQ=255) atcgTCGCCATACGCGCACCTCATTGTTGTCGGAGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCACTAATCCGCTTCTg > 1:5127629/1‑149 (MQ=255) gtcgCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCACTAATCCGCTTCTGAAc > 1:3767226/1‑149 (MQ=255) tcgCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCACTAATCCGCTTCTGAACg < 2:671857/149‑1 (MQ=255) cATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTCTCTTTGCGATTTCTTATTATCAGAGTGCCACTAATCCGCTTCTGAACGGAAt > 2:3416960/1‑149 (MQ=255) aTACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCACTAATCCGCTTCTGAACGGAAtt < 2:727383/149‑1 (MQ=255) cgcgCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCACTAATCCGCTTCTGAACGGAATTTTa < 2:4355797/149‑1 (MQ=255) cgcACCTCATTGTTGTCGGAGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCACTAATCCGCTTCTGAACGGAATTTTATg < 1:2405137/149‑1 (MQ=255) gcACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCACTAATCCGCTTCTGAACGGAATTTTATGc < 1:5155692/149‑1 (MQ=255) gcACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCACTAATCCGCTTCTGAACGGAATTTTATGc > 2:958472/1‑149 (MQ=255) aCCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCACTAATCCGCTTCTGAACGGAATTTTATGCTg < 2:3152277/149‑1 (MQ=255) aCCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCACTAATCCGCTTCTGAACGGAATTTTATGCTg < 1:4845235/149‑1 (MQ=255) ccTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGTGATTTCTTATTATCAGAGTGCCACTAATCCGCTTCTGAACGGAATTTTATGCTgg > 2:1135491/1‑149 (MQ=255) tCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCACTAATCCGCTTCTGAACGGAATTTTATGCTGGAt < 1:4506065/149‑1 (MQ=255) cATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCACTAATCCGCTTCTGAACGGAATTTTATGCTGGATa > 1:2300593/1‑149 (MQ=255) ttgttgTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCACTAATCCGCTTCTGAACGGAATTTTATGCTGGATaaa < 2:2061741/149‑1 (MQ=255) ttgttgTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCACTAATCCGCTTCTGAACGGAATTTTATGCTGGATaaa > 1:1744537/1‑149 (MQ=255) tgttgtCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCACTAATCCGCTTCTGAACGGAATTTTATGCTGGATaaaa < 1:433479/149‑1 (MQ=255) ttgtCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCACTAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAAg < 2:107505/149‑1 (MQ=255) ggCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCACTAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAAGGGCGt < 2:1661367/149‑1 (MQ=255) cgcTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTTTTATCAGAGTGCCACTAATCCGCTTCTGAACGGATTTTTATGCTGGATAAAAAGGGCGTTc < 1:514166/149‑1 (MQ=255) | ATCCAGCCGGTAGAGTTTCGCCACCCGGTCTATCTCTGCCAGATAAACATCCAGCAGGTCGAACGTCCAGTCGGGTCCATCGCTCAAACGTGTGGTGTCCTTATTCATAGAATCGATCGTCGCCATACGCGCACCTCATTGTTGTCGGCGCTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCACTAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAAGGGCGTTC > CP009273/1232572‑1232868 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |