| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,178,915 | C→G | 8.5% | intergenic (‑135/+88) | thiM ← / ← rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,178,915 | 0 | C | G | 8.5% | 831.6 / 11.4 | 260 | intergenic (‑135/+88) | thiM/rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
| Reads supporting (aligned to +/- strand): ref base C (72/163); new base G (22/2); total (95/165) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.98e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 261 total aligned reads displayed.
GTCGACTTGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGA‑AAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGC > CP009273/2178769‑2179063 | tCGACTTGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCgat < 2:1183437/149‑1 (MQ=255) tCGACTTGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTGCgat > 1:2555343/1‑149 (MQ=255) cGACTTGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTGCggtg > 2:1041349/1‑149 (MQ=255) gACTTGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCgatga < 2:5160144/149‑1 (MQ=255) gACTTGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCgatga < 2:2500121/149‑1 (MQ=255) aCTTGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTGCgatgat > 2:1789016/1‑149 (MQ=255) cTTGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATa < 1:1479363/149‑1 (MQ=255) tGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTGGGATGATaaa > 2:2257189/1‑149 (MQ=255) tGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGGGGTTGGGATGATaaa > 1:222555/1‑149 (MQ=255) aGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCa < 2:2123009/149‑1 (MQ=255) gTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTTCGATGATAAAACGCag > 1:2961080/1‑149 (MQ=255) cTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAgaggag < 2:490605/149‑1 (MQ=255) tCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGGTGTTAAAACGCAGaggagg > 2:1412377/1‑149 (MQ=255) ccTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAggagga < 1:4012020/149‑1 (MQ=255) cTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGAt < 1:5109699/149‑1 (MQ=255) tAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAAt < 2:4027085/149‑1 (MQ=255) tAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGGTGGGGTGATAAAAAGCCGGGGAGGGTGGGAAt > 1:159717/1‑149 (MQ=255) aCGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGGGGGTGCGATGATAAATCGCAGAGGGGGGTGGTGATGt > 2:3511531/1‑149 (MQ=255) cGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTc < 2:2674837/149‑1 (MQ=255) gTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTcc < 1:3565132/149‑1 (MQ=255) tGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATTGTAAAAAACAGAGGAGGATGGTAATGtaaa > 2:1633277/1‑146 (MQ=255) tGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCa < 2:1556074/149‑1 (MQ=255) tGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTGCGTTGATAAAAAGCACAGGAGGATTGTAATGTACa > 1:4187279/1‑149 (MQ=255) gaagaaGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAg < 1:2918044/149‑1 (MQ=255) aagaagCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTCTTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATAGCCGAGGCGGATGGTAATGTCCAgc > 2:2838341/1‑149 (MQ=255) aagaagCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTGCGATGTTAAATCGCAGAGGAGGCTGGTAATGTCCAgc > 2:3280738/1‑149 (MQ=255) agCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCAc < 1:4233300/149‑1 (MQ=255) agCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCAc < 1:2348874/149‑1 (MQ=255) agCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTGCGGTGATAAATAGCCGAGGCGGCTGGTAATGTGCCGCGCAc > 2:4955642/1‑149 (MQ=255) cAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCAcgc < 2:3321166/149‑1 (MQ=255) aaTGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCAcgcg < 2:4165657/149‑1 (MQ=255) aTGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGt < 1:3297324/149‑1 (MQ=255) ccTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTGCGATGATAAATCCCAGCGGAGGATGGTAATGTCCAGCGCCCGCGTTGTa > 2:3735240/1‑149 (MQ=255) ggtggtCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAAc < 1:4376872/149‑1 (MQ=255) ggtggtCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTTGGATGTTAAATAGCCGAGGTGGTTGGTAAATTACAGCCCACCCGGTGTAAAc > 1:791526/1‑149 (MQ=255) ggtCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGTGCACGCGTTGTAAACGAg < 2:2747713/149‑1 (MQ=255) ggtCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAg < 1:3694211/149‑1 (MQ=255) cactctttCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTGCGATGATAAAACGCCGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACCAGGa‑aa > 2:591781/7‑149 (MQ=255) cGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGa‑aa < 1:1017615/149‑1 (MQ=255) gTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGa‑aaa < 2:1504263/149‑1 (MQ=255) tGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCGGAAGGGCACCCCGAGTCGTGTGGTTTGGATGATAAATAGAAGAGGAGGATGGTTATTTCCAGCGCACGCGGTGTTAAACATGa‑aaaa > 1:217292/1‑149 (MQ=255) gACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGTTGATAAATAGCAGAGGAGGCTGGTAATGTCCAGCGCACCCGTTGTTAAAGAGGa‑aaaaa > 2:204926/1‑148 (MQ=255) gACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTTGGTGGGAATAAAAAAAACCGAGGTGGATTGTAAAGTCCACCGCACCCCATGTAAAAGAGTa‑aaaaa > 1:4667956/1‑148 (MQ=255) ttCCCTACGCTGTCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGA‑AAAACGGc < 1:4877346/149‑1 (MQ=255) ttCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGGTGCGATGATAAATAGCAGAGGAGGCTGGTAAAGTCCCGCCCACGCCTGGTAAACCACGC‑AAAACCGc > 2:5044297/1‑149 (MQ=255) tCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGA‑AAAACGGCa < 2:3283019/149‑1 (MQ=255) tCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGGTGGGATGATAAAAAGCCGAGGAGGCTGGTGATGTCCCGCCCCCCCCGTTTAAAAGAGGACAAAACgcc > 1:3818034/1‑147 (MQ=255) tACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTTCGCTTATAAAAAGCAGAGGAGGATGGTAATGTACAGCGCACGCGTTTTTAACGAGGA‑AAAACAGCAGttt > 2:3396064/1‑149 (MQ=255) tACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGA‑AAAACGGCAGttt < 2:69240/149‑1 (MQ=255) tACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGGGGTTTGGTTTATAAATAACACATGAGGATGGTAATTTCCACCGCCCGCGGTTTAAAAGAGGA‑AAAACAGccattt > 1:2159406/1‑144 (MQ=255) aCGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGA‑AAAACGGCAGtttt < 2:4356947/149‑1 (MQ=255) cTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTGCGATGATAAATAGCAGAGGCGGATGGTAATGTCCCGCCCACGCGTTGTAAACCAGGA‑AAAAACGCAGTTTTACa > 2:3742784/1‑149 (MQ=255) ggCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTTGTTTCGATGATAAAAAGCAGAGGAGGATTGTAATGTACATCGCACGCGTTTTAAACCAGGA‑AAAAAGGCAGTTTTaaaaa > 2:1655382/1‑148 (MQ=255) ggCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTTCGATGATAAATCGCAGACGCGGATGGGAATGTGCCGCGCACGCGTTGTAAACGAGGA‑AAAAACGCAGTTTTACAAt > 2:756955/1‑149 (MQ=255) ggCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGGGATGATAAATAGCAGAGGAGGATGGTAATGTACAGCGCACGCGTTGTTAAAGAGGA‑AAAACGGCAGGTTTACAAt > 2:2414453/1‑149 (MQ=255) gCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGTTTGGTAATGTCAAGCGCACGCGTTGTAAACGAGGA‑AAAACGGCAGTTTTACAATc < 1:1395219/149‑1 (MQ=255) cATTATCCAGATCAGGTGATACGTGTTTTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCTATTATAAATCGCAGAGGAGGTTGTTATTGTCAAGCGCACGCGTTGTAAACGAGGA‑AAAACGGCAGTTTTACAATcg < 1:1119226/149‑1 (MQ=255) aTTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGA‑AAAACGGCAGTTTTACAATcgc < 2:4082106/149‑1 (MQ=255) aTTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGA‑AAAACGGCAGTTTTACAATcgc < 2:3891739/149‑1 (MQ=255) aTTATCAAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCTGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGA‑AAAACGGCAGTTTTACAATcgc < 1:1255730/149‑1 (MQ=255) ttATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTTCGATGTTAAAAAGCCGAGGAGGATGGTAAAGTGCACCGCACCCGGTGTAAAACAGGA‑AAAAACGCAGTTTTaaaaaagcg > 1:3410276/1‑144 (MQ=255) tCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTTGTTTCGAAGATAAAACGCAGAGGATGATGGTAATGTACACCGCACCCGTTTTAAAAAACGA‑AAAAACGCAGGTTTAAAAACGCGTta > 2:2337439/1‑149 (MQ=255) ccAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGA‑AAAACGGCAGTTTTACAATCGCGTtaa < 2:1106569/149‑1 (MQ=255) ccAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGA‑AAAACGGCAGTTTTACAATCGCGTtaa < 1:864357/149‑1 (MQ=255) cAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGA‑AAAACGGCAGTTTTACAATCGCGTtaat < 2:2802945/149‑1 (MQ=255) cAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGA‑AAAACGGCAGTTTTACAATCGCGTtaat < 2:3325549/149‑1 (MQ=255) cAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGA‑AAAACGGCAGTTTTACAATCGCGTtaat < 2:3035654/149‑1 (MQ=255) aTCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGA‑AAAACGGCAGTTTTACAATCGCGTTAATaaa < 2:128790/149‑1 (MQ=255) cAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGA‑AAAACGGCAGTTTTACAATCGCGTTAATAAatt < 1:1107387/149‑1 (MQ=255) aGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTATTGTCCAGCGCACGCGTTGTAAACGAGGA‑AAAACGGCAGTTTTACAATCGCGTTAATAAatta < 2:1183316/149‑1 (MQ=255) aGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGA‑AAAACGGCAGTTTTACAATCGCGTTAATAAatta < 2:2441103/149‑1 (MQ=255) tGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGTTGGTATTGTCCAGCGCACGCGTTGTAAACGAGTA‑AAAACGGCAGTTTTACAATCGCGTTAATAAATTAttt < 1:101878/149‑1 (MQ=255) gATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGA‑AAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTg < 1:198432/149‑1 (MQ=255) aTACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTTCGCTGATAAAAAGCAGATGAGGATGGTAAAGTCCAGCGCACGCGTTTTAAAAGAGGA‑AAAACGGCCGTTTTACAAACGCGTTAATAAATTAtttta > 2:711588/1‑147 (MQ=255) aCGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTGGGATGGTAAATCGCCGAGGAGGATGGTAAAGTCCCCCCCACGCGGTGTAAAAGAGGA‑AAAAAGGCACTTTTAAAAACGCGGTAATAAAATATTTtata > 2:1514647/1‑149 (MQ=255) gggTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGGGGTTTCGATGATAAATAGCAGAGGTGGATGGTAAATTCCAGCGCACCCCGTGTAAAAGAGGA‑AAAAAGGCAGTTTTACAAACGCGTTAATAAATTATTTtatata > 1:412908/1‑149 (MQ=255) aTTTCTCAGCCTTCACGCAGATGGGCACCCCGAGTGGTTTGGTTGGTTTGATAAATCGCTGTGGTGGTTGTTAATGTCCAGCGCACGCGTTTTAAACGTGGA‑AACACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGaa < 1:916487/149‑1 (MQ=255) tttCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGA‑AAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAAt < 2:3093962/149‑1 (MQ=255) tttCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGA‑AAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAAt < 2:3381547/149‑1 (MQ=255) cAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGA‑AAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGc < 2:3624186/149‑1 (MQ=255) cAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCCGCGCACCCGTTGTAAACGAGGA‑AAAACGGCAGTTTTAAAATAGCGGTAATAAATTATTTTTTATATTAATCCacc > 2:4293722/1‑147 (MQ=255) gCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGA‑AAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCAc < 1:4560973/149‑1 (MQ=255) ccTTCACGCAGAAGGGCACCCCGTGTCGTTTGGTTGCGATTATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGA‑AAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCAcc < 1:3522456/149‑1 (MQ=255) cTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGA‑AAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCt < 2:3596977/149‑1 (MQ=255) cTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGA‑AAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCt < 2:2902783/149‑1 (MQ=255) ttCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGA‑AAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCtt < 2:2961080/149‑1 (MQ=255) gAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATAGCACAGGAGGATGGTAATGTCCAGCGCACGCCGTGTAAAAGAGGA‑AAAAACGCACTTTTAAAATCGCGTTAAAAAAATATTTTATATATGAATCCAGCACCCTCAGAAcca > 2:262017/1‑147 (MQ=255) aGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGA‑AAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACa < 1:3384853/149‑1 (MQ=255) ggCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGA‑AAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATc < 2:1139990/149‑1 (MQ=255) cACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGA‑AAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCa < 2:1984660/149‑1 (MQ=255) tCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGA‑AAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATcttctt < 2:418942/149‑1 (MQ=255) tCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGA‑AAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATcttctt > 2:344093/1‑149 (MQ=255) tCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGA‑AAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATcttctt < 1:4263759/149‑1 (MQ=255) acgttacgTTGCGAAGATAAAACGCAGAGGAGGATTGAAATGTCCAGCGCACGCTTTTTAAACGAGGA‑AAAACGGCAGTTATACAATCGCGTTAATAAATTATTTGATATATCAATCCAGCACCTTCAGAACGACATCCACATcttctt > 2:195631/8‑149 (MQ=255) gTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGA‑AAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCa > 1:1366598/1‑149 (MQ=255) tttGGTTGCGATGATAAATCGCAGAGGAGTATGGTAATGTCCAGCGCACGCGTTGTAAACGAGCA‑AAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCAc < 1:1797207/149‑1 (MQ=255) tGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGA‑AAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGTACCTTCAGAACGACATCCAGATCTTCTTCACGt > 2:472908/1‑149 (MQ=255) gTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGA‑AAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGttt > 1:609626/1‑149 (MQ=255) tGCGATTATAAATCGCAGTGGAGGATGGTAATGTCCAGCGCACGCGTTTTAAACGAGTA‑AAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTa < 1:1774421/149‑1 (MQ=255) cGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGA‑AAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGc < 2:1435378/149‑1 (MQ=255) | GTCGACTTGCATAGTTTGCTCCTGCCATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCACGCGTTGTAAACGAGGA‑AAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGC > CP009273/2178769‑2179063 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |