| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,556,774 | G→A | 21.5% | intergenic (+298/‑177) | yffP → / → yffQ | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,556,774 | 0 | G | A | 21.5% | 784.2 / 200.7 | 330 | intergenic (+298/‑177) | yffP/yffQ | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| Reads supporting (aligned to +/- strand): ref base G (117/142); new base A (33/38); total (150/180) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.93e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 338 total aligned reads displayed.
ACCTACCCGGGCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTT > CP009273/2556626‑2556922 | cTACCCGGGCCTTTCTCACTATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGt < 2:4182691/149‑1 (MQ=255) cTACCCGGGCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AAGt < 2:3561847/149‑1 (MQ=255) cccGGGCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGaa < 1:2343713/149‑1 (MQ=255) ccGGGCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AAGTGAAt < 1:301868/149‑1 (MQ=255) cGGGCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AAGTGAAtt < 1:1126994/149‑1 (MQ=255) gggCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAAttt < 2:3323531/149‑1 (MQ=255) ggCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAAtttt < 1:2822432/149‑1 (MQ=255) ggCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAAtttt > 1:2183129/1‑149 (MQ=255) ggCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAAtttt > 1:3539802/1‑149 (MQ=255) tttCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGATCATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGa < 2:2458356/149‑1 (MQ=255) tttCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGa > 1:3725562/1‑149 (MQ=255) tctcACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AAGTGAATTTTGTGATg > 2:4657448/1‑149 (MQ=255) tcACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AAGTGAATTTTGTGATGCa < 1:1622855/149‑1 (MQ=255) caATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGAt < 2:305999/149‑1 (MQ=255) aaTCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AAGTGAATTTTGTGATGCAGATc > 2:1739670/1‑149 (MQ=255) ccccGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCt < 1:3147123/149‑1 (MQ=255) cccGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCtt < 1:4482724/149‑1 (MQ=255) cccGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCtt > 2:1168130/1‑149 (MQ=255) gACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGTCTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AAGTGAATTTTGTGATGCAGATCGCTTTTTccc < 1:2778149/149‑1 (MQ=255) gACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AAGTGAATTTTGTGATGCAGATCGCTTTTTccc < 2:3884042/149‑1 (MQ=255) tataTCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAg < 1:74613/149‑1 (MQ=255) atatCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAgg > 1:4807986/1‑149 (MQ=255) tatCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGc > 2:1316419/1‑149 (MQ=255) tCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCAt > 1:1551457/1‑149 (MQ=255) aCCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCAttt < 1:4245569/149‑1 (MQ=255) cccATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCAtttt > 1:1380076/1‑149 (MQ=255) cccATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCAtttt < 1:4135475/149‑1 (MQ=255) cccATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AAGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCAtttt > 1:3400856/1‑149 (MQ=255) cccATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AAGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCAtttt < 2:2422262/149‑1 (MQ=255) ccATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AAGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCAttttt < 1:64139/149‑1 (MQ=255) ccATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AAGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCAttttt < 1:2569822/149‑1 (MQ=255) aTCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AAGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGt > 1:1725538/1‑149 (MQ=255) cTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGttt < 1:3093124/149‑1 (MQ=255) cTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGttt < 2:2097843/149‑1 (MQ=255) tttCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTa < 1:3669823/149‑1 (MQ=255) ttCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTaa > 2:2208056/1‑149 (MQ=255) ccGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAAtt < 2:1352007/149‑1 (MQ=255) gTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATtca > 2:4704750/1‑149 (MQ=255) gTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATtca > 1:4972665/1‑149 (MQ=255) ttttCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATtcaa > 2:579863/1‑149 (MQ=255) aGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAAc < 2:2698419/149‑1 (MQ=255) ggAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAg < 2:3392041/149‑1 (MQ=255) gagaCTGATGGCCGCCGACGTTGAACAATTGATTAATTTATGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAgg < 1:5171317/149‑1 (MQ=255) agaCTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGc < 1:1805688/149‑1 (MQ=255) agaCTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACAGTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGc < 2:761680/149‑1 (MQ=255) cTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AAGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGt < 2:1745582/149‑1 (MQ=255) gATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTc > 1:3834503/1‑149 (MQ=255) tGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AAGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTccc < 1:194846/149‑1 (MQ=255) ccgACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCcaacaac < 1:828287/149‑1 (MQ=255) ccgACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCcaacaac < 2:3967273/149‑1 (MQ=255) cgACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCcaacaaca > 2:3202479/1‑149 (MQ=255) aCGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACaaa < 2:4058030/149‑1 (MQ=255) aCGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACaaa < 2:5001576/149‑1 (MQ=255) cGTTGCACAATTGATTAATTTCTGAACATTCAAAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACaaa < 2:3789910/149‑1 (MQ=255) cGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACaaaa < 1:4540174/149‑1 (MQ=255) gTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAAt < 1:4281675/149‑1 (MQ=255) gCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AAGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATaaa > 2:3475196/1‑149 (MQ=255) acaATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGa > 1:4044687/1‑149 (MQ=255) acaATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AAGTGAATTTTGTGCTGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGa < 2:5156285/149‑1 (MQ=255) aaTTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AAGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATg > 1:4597927/1‑149 (MQ=255) aTTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATgg > 2:2556667/1‑149 (MQ=255) aTTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATgg > 2:2726308/1‑149 (MQ=255) ttCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTaaaaa < 1:3516330/149‑1 (MQ=255) ttCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AAGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTaaaaa < 2:16409/149‑1 (MQ=255) cTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATg < 2:2881720/149‑1 (MQ=255) tGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑a > 2:3757237/1‑149 (MQ=255) tGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACAAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑a < 1:114767/149‑1 (MQ=255) agAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑a > 1:5120108/2‑149 (MQ=255) aaCATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑aaa > 1:4914717/1‑149 (MQ=255) aaCATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑aaa > 2:4857358/1‑149 (MQ=255) aaCATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AAGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑aaa > 1:2920042/1‑149 (MQ=255) aTTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGGAAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACg > 2:4761181/1‑149 (MQ=255) ttC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGt < 1:1454849/149‑1 (MQ=255) ttC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGAAGTTCACAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGt > 2:3934920/1‑149 (MQ=255) c‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTgg < 2:1763991/149‑1 (MQ=255) c‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AAGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTgg > 1:330122/1‑149 (MQ=255) aaaTCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTggg > 2:4390029/1‑149 (MQ=255) aaaTCAACTCCCACCAAAGCCAACAAGATGGG‑AAGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTggg > 2:1271537/1‑149 (MQ=255) aaaTCAACTCCCACCAAAGCCAACAAGATGGG‑AAGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTggg < 1:1717956/149‑1 (MQ=255) aaTCAACTCCCACCAAAGCCAACAAGATGGG‑AAGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGa > 2:1942970/1‑149 (MQ=255) aTCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGaa < 2:151192/149‑1 (MQ=255) cAACTCCCACCAAAGCCAACAAGATGGG‑AAGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGAAGt < 2:1900016/149‑1 (MQ=255) cccACCAAAGCCAACAAGATGGG‑AAGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTTAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGAAGTGGCtt > 2:3722144/1‑149 (MQ=255) ccaccaAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGAAGTGGCttt > 2:4260632/1‑149 (MQ=255) ccaccaAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGAAGTGGCttt < 1:551607/149‑1 (MQ=255) caccaAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGAAGTGGCTTTa > 1:885802/1‑149 (MQ=255) accaAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGAAGTGGCTTTAc > 1:5055420/1‑149 (MQ=255) accaAAGCCAACAAGATGGG‑AAGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGAAGTGGCTTTAc > 1:1236809/1‑149 (MQ=255) aaGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAAACGGTGGGAAGTGGCTTTACTgg < 1:579863/149‑1 (MQ=255) aaGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGAAGTGGCTTTACTGGt > 1:1067470/1‑149 (MQ=255) aaGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGAAGTGGCTTTACTGGt > 1:462065/1‑149 (MQ=255) aGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGAAGTGGCTTTACTGGTg > 1:4386032/1‑149 (MQ=255) aGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGAAGTGGCTTTACTGGTg > 1:2690528/1‑149 (MQ=255) caacaaGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAAACGGTGGGAAGTGGCTTTACTGGTGAt > 1:3949544/1‑149 (MQ=255) acaaGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGAAGTGGCTTTACTGGTGATGGt > 2:79653/1‑149 (MQ=255) tGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACACAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGtt > 2:48091/1‑149 (MQ=255) tGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGtt < 2:3418883/149‑1 (MQ=255) ggg‑AAGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTg > 2:1010091/1‑149 (MQ=255) aGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGtt < 2:1991538/149‑1 (MQ=255) ggTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTGGGttt > 2:5066213/1‑149 (MQ=255) | ACCTACCCGGGCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTC‑AAATCAACTCCCACCAAAGCCAACAAGATGGG‑AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTT > CP009273/2556626‑2556922 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |