| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,644,397 | A→T | 8.3% | L417* (TTG→TAG) | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,644,397 | 0 | A | T | 8.3% | 1152.7 / 74.8 | 326 | L417* (TTG→TAG) | yfhM | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
| Reads supporting (aligned to +/- strand): ref base A (142/156); new base T (12/15); total (155/171) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.42e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.35e-01 | |||||||||||
Only 100 of 331 total aligned reads displayed.
GTTAGCGCGAATATGCCACATACCGGTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTAAATTCTGCTAAGTCCAGCGCCGGAAG > CP009273/2644249‑2644545 | ttAGCGCGAATATGCCACATACCGGTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCaa < 1:1419769/149‑1 (MQ=255) tAGCGCGAATATGCCACATACCGGTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAAc < 2:3713675/149‑1 (MQ=255) tAGCGCGAATATGCCACATACCGGTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAAc < 2:58794/149‑1 (MQ=255) gcgAATATGCCACATACCGGTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCtt > 1:2887782/1‑149 (MQ=255) gAATATGCCACATACCGGTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTa > 2:3553691/1‑149 (MQ=255) gAATATGCCACATACCGGTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTa > 2:3346804/1‑149 (MQ=255) aaTATGCCACATACCGGTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTAc > 2:3083660/1‑149 (MQ=255) aaTATGCCACATACCGGTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTAc > 1:3948663/1‑149 (MQ=255) aaTATGCCACATACCGGTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTAc < 2:2681122/149‑1 (MQ=255) atGCCACATACCGGTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGt < 2:5127695/149‑1 (MQ=255) gCCACATACCGGTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCt < 1:2110587/149‑1 (MQ=255) gCCACATACCGGTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCt < 1:5035904/149‑1 (MQ=255) gCCACATACCGGTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCt > 1:528304/1‑149 (MQ=255) gCCACATACCGGTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCt < 1:380465/149‑1 (MQ=255) acaTACCGGTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCCACGCTTTACCGTCTGCa > 2:3783680/1‑149 (MQ=255) caTACCGGTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCAt < 1:548666/149‑1 (MQ=255) aTACCGGTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATc > 2:2125464/1‑149 (MQ=255) aTACCGGTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATc > 1:1926794/1‑149 (MQ=255) tACCGGTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCTACGCTTTACAGTCTGCATCa < 2:4422034/149‑1 (MQ=255) ccGGGTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACg < 1:2535592/149‑1 (MQ=255) gTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACgcag > 1:5113105/1‑149 (MQ=255) tGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACgcagca > 1:3164332/1‑149 (MQ=255) gCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAAcc > 1:3297760/1‑149 (MQ=255) aTTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCAt < 1:4432495/149‑1 (MQ=255) aTTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCAt < 2:2952611/149‑1 (MQ=255) gCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGa < 1:1679165/149‑1 (MQ=255) tATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAgg > 1:902847/1‑149 (MQ=255) aTCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGa > 2:4369196/1‑149 (MQ=255) aTCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGa > 2:1432671/1‑149 (MQ=255) tCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGAt > 1:4976190/1‑149 (MQ=255) cGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGAtt < 2:1606955/149‑1 (MQ=255) aGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTAc < 2:1234762/149‑1 (MQ=255) gTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACTCTTTACCGTCTGCATCACGCAGCAAACCAGTGAGGATTAcc > 2:4847845/1‑149 (MQ=255) gTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTAcc > 1:2308672/1‑149 (MQ=255) tGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCg < 2:5176032/149‑1 (MQ=255) ccAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGttt < 2:4011202/149‑1 (MQ=255) ccAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGttt > 2:4903476/1‑149 (MQ=255) ggTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCAc < 2:2200176/149‑1 (MQ=255) gTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCAcc < 1:969999/149‑1 (MQ=255) gTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGc < 1:2469116/149‑1 (MQ=255) gTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGc < 1:1815697/149‑1 (MQ=255) tGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCg > 2:1838868/1‑149 (MQ=255) ggTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGa < 1:824287/149‑1 (MQ=255) agagGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATaa < 1:4642895/149‑1 (MQ=255) agagGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATaa > 1:4331724/1‑149 (MQ=255) agagGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATaa > 2:4708305/1‑149 (MQ=255) gagGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATaaa < 2:1888500/149‑1 (MQ=255) gagGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATaaa > 2:736761/1‑149 (MQ=255) gagGCCATTCTCCGGCTGACGAACGACGCTCCTGAGTAGCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATaaa < 2:5057870/149‑1 (MQ=255) agGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAg > 2:41737/1‑149 (MQ=255) agGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAg > 2:1524721/1‑149 (MQ=255) agGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAg < 1:2194736/149‑1 (MQ=255) ggCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGa < 1:2833334/149‑1 (MQ=255) gCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGAt < 1:3839231/149‑1 (MQ=255) ccATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATc > 2:1331999/1‑149 (MQ=255) ccATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATc < 2:4473495/149‑1 (MQ=255) tctcCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCTACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGt < 2:167736/149‑1 (MQ=255) tctcCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGt < 2:4605981/149‑1 (MQ=255) aCTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACa < 1:3435057/149‑1 (MQ=255) aaCGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGa > 2:1739606/1‑149 (MQ=255) aaCGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGa < 1:1275448/149‑1 (MQ=255) acgCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCTACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGaaaaa > 2:3655435/1‑149 (MQ=255) acgCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGaaaaa > 1:110755/1‑149 (MQ=255) acgCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGaaaaa > 1:2248319/1‑149 (MQ=255) gCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCTACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACt < 2:2393201/149‑1 (MQ=255) cTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTg < 1:1864143/149‑1 (MQ=255) cTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGttt < 2:4287061/149‑1 (MQ=255) gAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGc < 2:792743/149‑1 (MQ=255) gAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGc < 2:1299418/149‑1 (MQ=255) gTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCta > 1:1065054/1‑149 (MQ=255) tACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCtat < 1:3097019/149‑1 (MQ=255) tACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCtat < 1:2042288/149‑1 (MQ=255) aCCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCtata < 1:2349994/149‑1 (MQ=255) cTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGc > 1:2626348/1‑149 (MQ=255) tGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGcc < 2:3198814/149‑1 (MQ=255) tGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGcc < 2:5199941/149‑1 (MQ=255) ccATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTgg < 2:3870942/149‑1 (MQ=255) aTCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCTACGCTTTACAGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGgcg > 1:3570902/1‑149 (MQ=255) ggTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGcc > 2:2168507/1‑149 (MQ=255) tttAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAg > 1:4840497/1‑149 (MQ=255) cACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGt < 2:2615283/149‑1 (MQ=255) aCGTCTAACTTGATGGGTTGATTGGGCTACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGtt < 1:4272839/149‑1 (MQ=255) cGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGTATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTa < 1:47760/149‑1 (MQ=255) tCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTaaa > 2:3448139/1‑149 (MQ=255) tCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTaaa > 2:850032/1‑149 (MQ=255) cTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTAAAt > 2:2960228/1‑149 (MQ=255) tAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTAAAtt < 2:1926794/149‑1 (MQ=255) tAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTAAAtt > 2:3947914/1‑149 (MQ=255) ttGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTAAATTCTGc > 1:2490862/1‑149 (MQ=255) tGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTAAATTCTGCt < 2:1337554/149‑1 (MQ=255) gATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTAAATTCTGCTa > 1:2866788/1‑149 (MQ=255) gATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTAAATTCTGCTa > 1:4432229/1‑149 (MQ=255) aTGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTAAATTCTGCTaa > 1:626180/1‑149 (MQ=255) tGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTAAATTCTGCTAAg > 1:1622938/1‑149 (MQ=255) gggTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTAAATTCTGCTAAGt > 1:2814123/1‑149 (MQ=255) ggTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTAAATTCTGCTAAGTc < 2:5113105/149‑1 (MQ=255) ggTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTAAATTCTGCTAAGTc > 2:2324261/1‑149 (MQ=255) gTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTAAATTCTGCTAAGTcc > 1:4157649/1‑149 (MQ=255) gATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGAGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTAAATTCTGCTAAGTCCAgc < 1:3643223/149‑1 (MQ=255) tGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTAAATTCTGCTAAGTCCAGCGcc > 1:1353429/1‑149 (MQ=255) | GTTAGCGCGAATATGCCACATACCGGTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTAAATTCTGCTAAGTCCAGCGCCGGAAG > CP009273/2644249‑2644545 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |