| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,665,296 | C→T | 5.4% | S238L (TCG→TTG) | hcaB → | 2,3‑dihydroxy‑2,3‑dihydrophenylpropionate dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,665,296 | 0 | C | T | 5.4% | 1412.4 / 41.9 | 385 | S238L (TCG→TTG) | hcaB | 2,3‑dihydroxy‑2,3‑dihydrophenylpropionate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base C (180/183); new base T (9/12); total (190/195) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.55e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 393 total aligned reads displayed.
GCCAGCGACCTGCGCGGCCCACAGGCGCTCGGGCAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCATTATTGTCGGTGGCGGGCAA > CP009273/2665148‑2665444 | gCCAGCGACCTGCGCGGCCCACAGGCGCTCGGGCAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATc > 2:5036786/1‑149 (MQ=255) aGCGACCTGCGCGGCCCACAGGCGCTCGGGCAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATcgcg > 1:2405050/1‑149 (MQ=255) aCCTGCGCGGCCCACAGGCGCTCGGGCAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATTGCGgcgc < 2:2571755/149‑1 (MQ=255) aCCTGCGCGGCCCACAGGCGCTCGGGCAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGgcgc > 1:4997731/1‑149 (MQ=255) aCCTGCGCGGCCCACAGGCGCTCGGGCAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGgcgc > 1:31975/1‑149 (MQ=255) aCCTGCGCGGCCCACAGGCGCTCGGGCAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGgcgc > 2:3392794/1‑149 (MQ=255) aCCTGCGCGGCCCACAGGCGCTCGGGCAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGgcgc > 2:783319/1‑149 (MQ=255) cTGCGCGGCCCACAGGCGCTCGGGCAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCaa < 2:3154361/149‑1 (MQ=255) tGCGCGGCCCACAGGCGCTCGGGTAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCaat > 1:3708194/1‑149 (MQ=255) gcgGCCCACAGGCGCTCGGGCAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATTGCGGCGCaataat < 2:3904389/149‑1 (MQ=255) gcgGCCCACAGGCGCTCGGGCAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCaataat < 2:1787872/149‑1 (MQ=255) cgGCCCACAGGCGCTCGGGCAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATc < 1:1834793/149‑1 (MQ=255) cccACAGGCGCTCGGGCAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATcgcg < 2:2728631/149‑1 (MQ=255) cacaGGCGCTCGGGCAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTGGACATCGCGGCGCAATAATCGCGCa < 1:2649770/149‑1 (MQ=255) acaGGCGCTCGGGCAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCAt > 2:2119516/1‑149 (MQ=255) acaGGCGCTCGGGCAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCAt < 1:3124441/149‑1 (MQ=255) gcTCGGGCAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAAGTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCg < 1:4452346/149‑1 (MQ=255) tCGGGCAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGgt > 2:3230876/1‑149 (MQ=255) cAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGtgat < 2:2397478/149‑1 (MQ=255) aGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTgatgat > 1:3605606/1‑149 (MQ=255) gTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATTGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATc > 1:1666192/1‑149 (MQ=255) gTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATc < 1:1002954/149‑1 (MQ=255) aCCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGc > 1:2742557/1‑149 (MQ=255) ccTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCt > 2:3761881/1‑149 (MQ=255) cTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTg > 1:679688/1‑149 (MQ=255) tCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGa > 2:4814608/1‑149 (MQ=255) tCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGa < 1:4788912/149‑1 (MQ=255) aTAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGc > 2:57263/1‑149 (MQ=255) tGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGt > 1:3326011/1‑149 (MQ=255) tGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGt < 1:4700480/149‑1 (MQ=255) cAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATAGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATAAACGCTGATGCGGGttt > 1:3039674/1‑149 (MQ=255) tctcTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGc > 1:1866852/1‑149 (MQ=255) ctGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGAt < 1:4385224/149‑1 (MQ=255) ctGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGAt < 2:3995613/149‑1 (MQ=255) tGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGAtt > 1:2844058/1‑149 (MQ=255) gACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTc > 2:284572/1‑149 (MQ=255) cGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTcgc < 2:4522329/149‑1 (MQ=255) ggAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATTGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCa > 2:4421297/1‑149 (MQ=255) aTTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCa > 2:1459526/1‑149 (MQ=255) tGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACg > 2:4274626/1‑149 (MQ=255) ccgccATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTa > 1:254567/1‑149 (MQ=255) gccATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGc < 2:1207598/149‑1 (MQ=255) ccATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCg > 1:605015/1‑149 (MQ=255) aTTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTAGCCACGTAGCggc < 2:1536277/149‑1 (MQ=255) ttttACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCggct > 2:1383956/1‑149 (MQ=255) ttttACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCggct < 1:5170342/149‑1 (MQ=255) ttttACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCggct > 2:1103364/1‑149 (MQ=255) ttttACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCggct > 1:2162199/1‑149 (MQ=255) ttttACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCggct < 1:3002834/149‑1 (MQ=255) tttACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCggctg < 1:4864213/149‑1 (MQ=255) tttACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCgactg > 1:421804/1‑149 (MQ=255) tACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCggctggg < 2:2231331/149‑1 (MQ=255) aCCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCggctgggc > 2:5057541/1‑149 (MQ=255) aCCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCggctgggc > 1:4326145/1‑149 (MQ=255) aCCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCggctgggc > 1:874511/1‑149 (MQ=255) ccGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCggctgggct > 2:4851671/1‑149 (MQ=255) ccGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCggctgggct > 2:2890945/1‑149 (MQ=255) cGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCggctgggctg < 2:4724228/149‑1 (MQ=255) gCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGgctgggctgg > 2:3590753/1‑149 (MQ=255) gCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGgctgggctgg > 1:1140940/1‑149 (MQ=255) gCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGgctgggctgg > 2:707865/1‑149 (MQ=255) gCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGgctgggctgg > 1:3280586/1‑149 (MQ=255) tGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGAt < 2:2100701/149‑1 (MQ=255) gCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCTGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGACATTCGCCACGTAGCGGCTGGGCTGGATc < 1:2509774/149‑1 (MQ=255) tttttCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTa < 2:191549/149‑1 (MQ=255) tttttCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTa < 2:645870/149‑1 (MQ=255) cAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCAc < 2:862473/149‑1 (MQ=255) cAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCAc < 2:2688069/149‑1 (MQ=255) aaCCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACg < 2:2487820/149‑1 (MQ=255) aCCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGa < 2:4153350/149‑1 (MQ=255) aCCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGa < 2:3207663/149‑1 (MQ=255) gcggATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATgaa > 2:489263/1‑149 (MQ=255) cggATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATgaaa > 2:3495400/1‑149 (MQ=255) cggATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATgaaa < 1:1635699/149‑1 (MQ=255) cggATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATgaaa < 1:3516095/149‑1 (MQ=255) gATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATgaaaga > 2:3025504/1‑149 (MQ=255) gATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATgaaaga > 2:2969330/1‑149 (MQ=255) aTTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATgaaagaa > 1:942792/1‑149 (MQ=255) ttttACGGGGCCGTATGTGATGTTGACATTGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATgaaagaaa > 2:2945369/1‑149 (MQ=255) ttttACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATgaaagaaa < 1:1400519/149‑1 (MQ=255) ttttACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATgaaagaaa < 1:5159258/149‑1 (MQ=255) tACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGaaaaaa < 1:3392794/149‑1 (MQ=255) ccGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAAc < 1:1093781/148‑1 (MQ=255) gggCCGTATGTGATGTTGACATCGCGGCGCAATACTCGCGCATTAAGCGGTGGGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAACGac < 1:3769437/149‑2 (MQ=255) gggCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAACGAt > 2:1255886/1‑149 (MQ=255) gCCGGATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCa < 2:1272003/149‑1 (MQ=255) ccGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCat < 2:4225599/149‑1 (MQ=255) ccGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCat < 2:1650276/149‑1 (MQ=255) gTATGTGATGTTGACATTGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCatta < 1:1255921/149‑1 (MQ=255) tATGTGATGTTGACATCGCGGCGAAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCattat < 1:1470579/149‑1 (MQ=255) gtgATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCATTATTGt > 2:4647669/1‑149 (MQ=255) aTGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCATTATTGTCgg > 1:2283992/1‑149 (MQ=255) tGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGGTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCATTATTGTCGGt < 1:5073982/149‑1 (MQ=255) tGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCATTATTGTCGGt < 1:2076798/149‑1 (MQ=255) gTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCATTATTGTCGGTg > 2:919764/1‑149 (MQ=255) tGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCATTATTGTCGGTGGc < 2:2696519/149‑1 (MQ=255) gACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCATTATTGTCGGTGGCg > 2:102/1‑149 (MQ=255) gACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCATTATTGTCGGTGGCg > 1:4564641/1‑149 (MQ=255) aCATCGCGGCGCAATACTCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCAGTATTGTCGGTGGCgg < 2:2011477/149‑1 (MQ=255) aCATCGCGGCGCAATAATCGCTCATTTAGCGGTGTTATTATAAACTCTGATGCGGGTTTAGCGATTCGCGGCATTAGCCTCGTAGCGGATGGTCTGTATCTTTAAGGAAGCACGATGTAAGAAAAAACGATCATTATTGTCGGTGGCgt < 1:4664009/149‑2 (MQ=255) | GCCAGCGACCTGCGCGGCCCACAGGCGCTCGGGCAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCATTATTGTCGGTGGCGGGCAA > CP009273/2665148‑2665444 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |