| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,681,873 | T→A | 56.9% | Q97L (CAG→CTG) | glrR ← | response regulator regulating glmY sRNA in two‑component system with sensor protein GlrK |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,681,873 | 0 | T | A | 56.9% | 174.7 / inf | 290 | Q97L (CAG→CTG) | glrR | response regulator regulating glmY sRNA in two‑component system with sensor protein GlrK |
| Reads supporting (aligned to +/- strand): ref base T (58/67); new base A (71/94); total (129/161) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.33e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.85e-01 | |||||||||||
Only 100 of 305 total aligned reads displayed.
AAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCTGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCTGCATACCGTCCATTTCATCCATCCGCAGGTCGCTGATGACTAAATCTACTTTTTC > CP009273/2681726‑2682021 | aaaCGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGGGGCTGGCGCGGATTGCTCCAGCGCATCGTCATTTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCctgctg < 2:2293303/149‑1 (MQ=255) cGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAgtgt < 2:1937994/149‑1 (MQ=255) agcaTCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCTGTGTTgc < 1:2994204/149‑1 (MQ=255) gcaTCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACCGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTgca < 1:4396565/149‑1 (MQ=255) gcaTCAGCGGGCTGCGGGTGACAATGGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCTGTGTTgca < 2:4182222/149‑1 (MQ=255) aTCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGACACTAAAAACGCCCTGCAGTGTTgcagc > 2:5107979/1‑149 (MQ=255) tCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTgcagca > 1:524881/1‑149 (MQ=255) aGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCTGTGTTGCAGCAAc > 1:2589012/1‑149 (MQ=255) gCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACg > 1:4552809/1‑149 (MQ=255) gCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGATTGGTGAGGAAACTAAAAACGCCCTGCTGTGTTGCAGCAACGGCAt < 1:4268651/149‑1 (MQ=255) gCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCTGTGTTGCAGCAACGGCATCgg < 2:3868443/149‑1 (MQ=255) ggTGACAATGGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCTGTGTTGCAGCAACGGCATCGGGaa < 1:4110524/149‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATCGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATa < 1:1067503/149‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATa < 2:2555487/149‑1 (MQ=255) gACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAg < 1:1844374/149‑1 (MQ=255) aTTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAAcc > 1:1193813/1‑149 (MQ=255) ttGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCTGTGTTGCAGCAACGGCATCGGGAATAGAACCa > 2:2000965/1‑149 (MQ=255) tGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCAt > 1:2167291/1‑149 (MQ=255) gCCTCGCGCCTGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGTCATCGGGAATAGAACCATg < 1:2762654/149‑1 (MQ=255) ccTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATgc < 1:1115873/149‑1 (MQ=255) cgcCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCTGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGt < 2:4839541/149‑1 (MQ=255) cgcCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGt < 1:3549875/149‑1 (MQ=255) cgcCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGt < 1:1709635/149‑1 (MQ=255) ccAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCTGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTaa > 1:1023387/1‑149 (MQ=255) ccAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCTGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTaa < 2:2340002/149‑1 (MQ=255) ccAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTaa < 2:2127079/149‑1 (MQ=255) gCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGaa > 2:1564350/1‑149 (MQ=255) ttCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGaataa > 2:698498/1‑149 (MQ=255) tCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCTGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGaataat < 2:4016436/149‑1 (MQ=255) tCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGaataat < 1:3640624/149‑1 (MQ=255) tCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTAc < 1:4461085/149‑1 (MQ=255) ggctggcGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCTGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCa > 1:409817/1‑149 (MQ=255) tggcGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCTGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTc < 2:3635315/149‑1 (MQ=255) ggcGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTcc < 1:4873455/149‑1 (MQ=255) cgGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCTGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGc < 2:3445422/149‑1 (MQ=255) cgGATTGCTCCAGAGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGc < 2:5181477/149‑1 (MQ=255) ggATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCTGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCt < 1:3264079/149‑1 (MQ=255) ggATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCt > 2:4571671/1‑149 (MQ=255) ggATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGATTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCt < 1:3473131/149‑1 (MQ=255) gATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTg > 2:580205/1‑149 (MQ=255) aTTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCTGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGc < 2:4090410/149‑1 (MQ=255) aTTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCTGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGc > 2:2640537/1‑149 (MQ=255) aTTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCTGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGc > 1:1390616/1‑149 (MQ=255) aTTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGc < 2:3803384/149‑1 (MQ=255) cTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCTGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACtt < 1:1621571/149‑1 (MQ=255) cAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCTGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCt > 2:1015222/1‑149 (MQ=255) cAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCt < 2:3572483/149‑1 (MQ=255) gcgcATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTgg > 1:550826/1‑149 (MQ=255) gcATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGAt < 2:2217874/149‑1 (MQ=255) gcATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGAt < 2:725199/149‑1 (MQ=255) gcATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGAt < 2:1146310/149‑1 (MQ=255) cATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCTGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGAtt < 2:1411535/149‑1 (MQ=255) cATCGTCAATTGCCTGATATAGCGCGTATTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCTGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGAtt < 1:2194746/149‑1 (MQ=255) aTCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGAttt > 1:2100662/1‑149 (MQ=255) tCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTc > 2:1071380/1‑149 (MQ=255) tCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTc < 2:3100065/149‑1 (MQ=255) gTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCTGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAg > 2:2836958/1‑149 (MQ=255) gTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAg > 1:2322654/1‑149 (MQ=255) tCAATGGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCTGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGc < 2:3038909/149‑1 (MQ=255) aaTTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCATGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCaa > 1:5050371/1‑149 (MQ=255) tGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACa < 2:4539965/149‑1 (MQ=255) cTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCTGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCt < 2:3677347/149‑1 (MQ=255) tGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCTg > 2:3590149/1‑149 (MQ=255) tataGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCTGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCTGCAt < 2:1893614/149‑1 (MQ=255) tataGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCTGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCTGCAt < 2:2089792/149‑1 (MQ=255) ataGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCTGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCTGCATa > 1:3924027/1‑149 (MQ=255) taGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCTGCATAc < 1:4040984/149‑1 (MQ=255) taGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCTGCATAc > 2:2751746/1‑149 (MQ=255) gcgTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCTGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCTGCATACCGTc > 2:2766621/1‑149 (MQ=255) gcgTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCTGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCTGCATACCGTc > 2:1667067/1‑149 (MQ=255) gcgTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCTGCATACCGTc < 2:555054/149‑1 (MQ=255) cgTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCTGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCTGCATACCGTcc > 1:349028/1‑149 (MQ=255) gTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCTGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCTGCATACCGTCCa > 2:4272878/1‑149 (MQ=255) gTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCTGCATACCGTCCa > 1:2892447/1‑149 (MQ=255) tCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCTGCATACCGTCCAt < 2:2409565/149‑1 (MQ=255) tCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCTGCATACCGTCCAt > 2:4144716/1‑149 (MQ=255) gTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCTGCATACCGTCCATTTcat > 2:108727/1‑149 (MQ=255) cGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCTGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCTGCATACCGTCCATTTcatcc < 1:4673351/149‑1 (MQ=255) gACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCTGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCTGCATACCGTCCATTTcatcca > 2:4448196/1‑149 (MQ=255) aCAGGCTTGGTGAGGAAACTAAAAACGCCCTGCTGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCTGCATACCGTCCATTTcatccat > 2:5076794/1‑149 (MQ=255) ggCTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCTGCATACCGTCCATTTCATCCATCCg > 1:3827362/1‑149 (MQ=255) cTTGGTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCTGCATACCGTCCATTTCATCCATCCGCa < 1:951790/149‑1 (MQ=255) ggTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCTGCATACCGTCCATTTCATCCATCCGCAGGt < 1:3368376/149‑1 (MQ=255) gTGAGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCTGCATACCGTCCATTTCATCCATCCGCAGGTc > 1:4933358/1‑149 (MQ=255) gAGGAAACTAAAAACGCCCTGCTGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCTGCATACCGTCCATTTCATCCATCCGCAGGTCGc > 1:3395099/1‑149 (MQ=255) aGGAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCTGCATACCGTCCATTTCATCCATCCGCAGGTCGCt < 1:1502215/149‑1 (MQ=255) ggAAACTAAAAACGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCTGCATACCGTCCATTTCATCCATCCGCAGGTCGCtg > 1:734705/1‑149 (MQ=255) aaaCGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCTGCATACCGTCCATTTCATCCATCCGCAGGTCGCTGATGACTaaa > 1:3737584/1‑149 (MQ=255) aaaCGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCTGCATACCGTCCATTTCATCCATCCGCAGGTCGCTGATGACTaaa < 2:2976270/149‑1 (MQ=255) aaaCGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCTGCATACCGTCCATTTCATCCATCCGCAGGTCGCTGATGACTaaa > 1:1991301/1‑149 (MQ=255) aaCGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCTGCATACCGTCCATTTCATCCATCCGCAGGTCGCTGATGACTAAAt < 2:3958284/149‑1 (MQ=255) cGCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCTGCATACCGTCCATTTCATCCATCCGCAGGTCGCTGATGACTAAATCt < 1:3951212/149‑1 (MQ=255) gCCCTGCAGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCTGCATACCGTCCATTTCATCCATCCGCAGGTCGCTGATGACTAAATCTa > 1:3324221/1‑149 (MQ=255) cccTGCAGTGTTGCAGCATCGGCATCGGGAATAGAACCATGCGCGGTAAGTATAATTACCGGCATTCCCGGCTGCACTGTCTGGATTTCAGCAAACAGCTGCATTCCGTCCATTTCTTCCATGCGCAGGTCGCTTTTGACTATATCTAc < 2:1213369/149‑1 (MQ=255) ccTGCTGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCTGCATACCGTCCATTTCATCCATCCGCAGGTCGCTGATGACTAAATCTACt < 1:3094641/149‑1 (MQ=255) ccTGCTGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCTGCATACCGTCCATTTCATCCATCCGCAGGTCGCTGATGACTAAATCTACt < 1:5100044/149‑1 (MQ=255) tgctgTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCTGCATACCGTCCATTTCATCCATCCGCAGGTCGCTGATGACTAAATCTACttt > 1:272769/1‑149 (MQ=255) gctgTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCTGCATACCGTCCATTTCATCCATCCGCAGGTCGCTGATGACTAAATCTACtttt > 2:4385850/1‑149 (MQ=255) gctgTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCTGCATACCGTCCATTTCATCCATCCGCAGGTCGCTGATGACTAAATCTACtttt < 1:432484/149‑1 (MQ=255) gctgTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCTGCATACCGTCCATTTCATCCATCCGCAGGTCGCTGATGACTAAATCTACtttt < 2:4718959/149‑1 (MQ=255) | AAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAACTAAAAACGCCCTGCTGTGTTGCAGCAACGGCATCGGGAATAGAACCATGCGCGGTAAGAATAATTACCGGCATTCCCGGCTGCACTTTCTGGATTTCAGCAAACAGCTGCATACCGTCCATTTCATCCATCCGCAGGTCGCTGATGACTAAATCTACTTTTTC > CP009273/2681726‑2682021 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |