Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,182,319 G→T 11.0% pseudogene (1540/2445 nt) yqiG → pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,182,3190GT11.0% 776.7 / 34.7 255pseudogene (1540/2445 nt)yqiGpseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein
Reads supporting (aligned to +/- strand):  ref base G (131/88);  new base T (4/32);  total (135/120)
Fisher's exact test for biased strand distribution p-value = 3.10e-08
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 260 total aligned reads displayed.

CACGAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAATATTTCGATTCCCTGGGGAACTAGTAGAACATTGAGCTATGGTATGCAACGA  >  CP009273/3182171‑3182465
                                                                                                                                                    |                                                                                                                                                  
   gAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGAtt                                                                                                                                                 >  2:3508614/1‑149 (MQ=255)
   gAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGAtt                                                                                                                                                 <  1:691515/149‑1 (MQ=255)
     aTTATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGAtttt                                                                                                                                               >  1:1610257/1‑149 (MQ=255)
      ttATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTg                                                                                                                                              >  1:1630527/1‑149 (MQ=255)
      ttATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTg                                                                                                                                              >  2:2763100/1‑149 (MQ=255)
       tATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGa                                                                                                                                             >  1:2870254/1‑149 (MQ=255)
          cAGAATGAAAAAGAGAGTTATATTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGatat                                                                                                                                          <  1:2516707/149‑1 (MQ=255)
           aGAATGAAAAAGAGAGTTATATTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATc                                                                                                                                         <  2:3680795/149‑1 (MQ=255)
           aGAATGAAAAAGAGAGTTATATTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATc                                                                                                                                         >  1:3758255/1‑149 (MQ=255)
                gAAAAAGAGAGTTATATTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGcc                                                                                                                                    <  1:2325097/149‑1 (MQ=255)
                   aaaGAGAGTTATATTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCAtt                                                                                                                                 >  2:2720122/1‑149 (MQ=255)
                   aaaGAGAGTTATATTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCAtt                                                                                                                                 >  1:1546467/1‑149 (MQ=255)
                   aaaGAGAGTTATATTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCAtt                                                                                                                                 >  1:2931598/1‑149 (MQ=255)
                   aaaGAGAGTTATATTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCAtt                                                                                                                                 >  1:3357258/1‑149 (MQ=255)
                    aaGAGAGTTATATTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATCTCGGGCCATTa                                                                                                                                >  2:4866226/1‑149 (MQ=255)
                     agagagTTATATTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTaa                                                                                                                               >  2:2820288/1‑149 (MQ=255)
                      gagagTTATATTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTaaa                                                                                                                              >  1:2802812/1‑149 (MQ=255)
                       agagTTATATTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTaaaa                                                                                                                             >  2:326480/1‑149 (MQ=255)
                         agTTATATTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTaaaaaa                                                                                                                           <  1:4797570/149‑1 (MQ=255)
                           ttATATTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCTATTTTGATATCGGGCCATTAAAAAACg                                                                                                                         >  1:2984125/1‑149 (MQ=255)
                            tataTTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGt                                                                                                                        >  2:4022934/1‑149 (MQ=255)
                            tataTTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGt                                                                                                                        <  1:2292573/149‑1 (MQ=255)
                               atTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGtctc                                                                                                                     >  2:1876494/1‑149 (MQ=255)
                                  gTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCAc                                                                                                                  >  2:5004597/1‑149 (MQ=255)
                                  gTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCAc                                                                                                                  >  1:4367480/1‑149 (MQ=255)
                                  gTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCAc                                                                                                                  >  2:5004604/1‑149 (MQ=255)
                                  gTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCAc                                                                                                                  >  2:656402/1‑149 (MQ=255)
                                          tAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTaa                                                                                                          >  1:84783/1‑149 (MQ=255)
                                          tAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTaa                                                                                                          >  1:3635913/1‑149 (MQ=255)
                                          tAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTaa                                                                                                          >  1:1322957/1‑149 (MQ=255)
                                            aCCATTATCTTTAATCATTATGTTTAAATACATACGTATTTTTGGCTCTTAATACTTACTGGGACGCCAGCATTATTGTTAATTATTATTTATCAATTAGCCGGTTTTTTTATATCGGGCAATTAAAAAACGTCTCCACTTCTCTAACa                                                                                                        <  2:4788548/149‑1 (MQ=255)
                                             ccAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACAt                                                                                                       >  2:3132446/1‑149 (MQ=255)
                                                 tATTTTGAATCATTAATTTTAAATACATACGTTATTTTGTCTCGTAATACTTACGGGGACGCCAGCAGTATTTTGAATTATTAATTATCACTTAGCCGGTATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAg                                                                                                   <  2:3913477/149‑1 (MQ=255)
                                                  ttattGAATCATTATGTTTAAATAAATACTATTTTTTGGCTCGTATTAATTACGGGGACGCCAGCATTATTGTTAATTTTTAATTATCACTTTGCCGCTTTTTTGATAGGGGGCAATAAAAAAACGTCTCCACTTCTCTAACATTTAGc                                                                                                  <  1:4012761/146‑1 (MQ=255)
                                                  atatttaataatTAATTTAAAATACATACTTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCTGTAATTTTAATTATTCATTATCAATTAGCCGCTATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGc                                                                                                  <  1:3265674/143‑1 (MQ=255)
                                                  aTCTTTAATATTTAAGGTTAAATACATACGTATGTTTGGCTGGTATTACTTACTGGGACGCCAGCAGTATTGTGAATTATTCTTTATCACTTAGCCGCTATTTTGATATCGGGCCATTAAAACACGTCTCCACTTCTCTAACATTTAGc                                                                                                  <  1:225044/149‑1 (MQ=255)
                                                  aTCTTTAATAATTATGTTTAAATAAATACGTATTTTTGGCTCTTAATAGTTCGTGGGACGCCAGCTGTATTTTTATTTTTTATTTATCAGTTAGCGGCTTTTTTTATATCGGGCAATTAAAAAACGTCTCCACTTCTCTAACATTTAGc                                                                                                  <  1:1416471/149‑1 (MQ=255)
                                                   tCTTGAATCATTAAGTTTAAATACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCTTTATTGTGAATTATTAATTATCACTTAGCCGCTATTTTTATATCGGGCAATTAAAAAACGTCTCCACTTCTCTAACATTTAGcc                                                                                                 <  1:1280099/149‑1 (MQ=255)
                                                    cTTGAATCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCg                                                                                                >  1:3953198/1‑149 (MQ=255)
                                                        aaTCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATa                                                                                            >  2:772620/1‑149 (MQ=255)
                                                         aTCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACTTCTCCACTTCTCTAACATATAGCCGAATaa                                                                                           >  2:439084/1‑149 (MQ=255)
                                                            aTTAAGTTTTAATAAATACTTAAGTTTTGCTAGTAATACTTACTGGTACGCCAGAATTAATGTTAATTATTAATTATAACTTTTCCGCGATTTTTATATCGGGAAATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACt                                                                                        <  1:3411991/149‑1 (MQ=255)
                                                             ttatgtttAAATAAATACTTAATTTTGGCTCTTAATACTTACTGGGACGCCAGCATTATTGTTAATTTTTATTTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTg                                                                                       <  1:2060188/143‑1 (MQ=255)
                                                             ttAAGGTTAAATACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTg                                                                                       <  2:4290314/149‑1 (MQ=255)
                                                                      aaTACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAagaaga                                                                              >  2:2805972/1‑149 (MQ=255)
                                                                      aaTACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTAATTATCACTTAGCCGCTATTTTGATATCGGGCCATAAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAagaaga                                                                              <  1:1147557/149‑1 (MQ=255)
                                                                       atacatacGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGAc                                                                             >  2:4693456/1‑149 (MQ=255)
                                                                       atacatacGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGAc                                                                             <  2:1744790/149‑1 (MQ=255)
                                                                         acatacGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACaa                                                                           >  2:3595410/1‑149 (MQ=255)
                                                                          catacGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAAc                                                                          >  2:3028822/1‑149 (MQ=255)
                                                                            tacGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCa                                                                        <  2:4471212/149‑1 (MQ=255)
                                                                             acttAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCTGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAg                                                                       <  2:1117011/146‑1 (MQ=255)
                                                                                tAAGTTTGGCTCGTAATACTTAGTGGTACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGAt                                                                    <  2:3725503/149‑1 (MQ=255)
                                                                                tAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGAt                                                                    <  2:4227458/149‑1 (MQ=255)
                                                                                tAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGAt                                                                    >  2:1559493/1‑149 (MQ=255)
                                                                                tAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGAt                                                                    >  2:3973920/1‑149 (MQ=255)
                                                                                tAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCAATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGAt                                                                    <  2:1405762/149‑1 (MQ=255)
                                                                                   gTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCaa                                                                 >  1:415186/1‑149 (MQ=255)
                                                                                   gTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCaa                                                                 >  2:783517/1‑149 (MQ=255)
                                                                                       ggCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGt                                                             >  1:4930085/1‑149 (MQ=255)
                                                                                        gCTCTTAATACTTACTGGGACGCCAGCATTATTTTTAATTATTAATTATCAATTAGCCGCGTTTTTGATATCGGGCAATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTa                                                            <  1:1144537/149‑1 (MQ=255)
                                                                                              aaTACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAAATGGGAAGAAGACAACCAGGATCAACTGTACCTaaa                                                      >  2:2600880/1‑149 (MQ=255)
                                                                                               aTACTTACTGGGACGCCAGCATTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTTATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAat                                                     <  1:4700308/149‑1 (MQ=255)
                                                                                                tacttactGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAata                                                    >  2:4083449/1‑149 (MQ=255)
                                                                                                 acttactGGGACGCCAGCTGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAatat                                                   <  2:4556174/149‑1 (MQ=255)
                                                                                                    tagggggACGCAAGAATTAATGTTATTTATTAATTATCAATTAGCCGAGATTTTGATATCGGCCAATAAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAATATTTc                                                <  1:4534669/145‑1 (MQ=255)
                                                                                                    tactGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAATATTTc                                                <  2:245197/149‑1 (MQ=255)
                                                                                                     agtGGGACGCCAGCAGTAATGTGACTTTTTCATTATCAATTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGATGACAACCAGGATCAACTGTACCTAAATATTTCg                                               <  2:5048511/147‑1 (MQ=255)
                                                                                                      ctGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAATATTTCGa                                              >  2:1312022/1‑149 (MQ=255)
                                                                                                      ctGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAATATTTCGa                                              >  1:3710695/1‑149 (MQ=255)
                                                                                                       tGGGACGCCAGCAGTATTGTGAATTATTCTTTATCACTTCGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAATATTTCGAt                                             <  2:1041197/149‑1 (MQ=255)
                                                                                                       tGGGACGCCAGCAGTAATGTGAATTATTAATTATCACTTAGCCGCGATTTTTATATCGGGCAATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAATATTTCGAt                                             <  1:3375636/149‑1 (MQ=255)
                                                                                                        gggACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAATATTTCGAtt                                            <  2:3288024/149‑1 (MQ=255)
                                                                                                        gggACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAATATTTCGAtt                                            >  1:2706911/1‑149 (MQ=255)
                                                                                                         ggACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAATATTTCGATTc                                           >  2:2377072/1‑149 (MQ=255)
                                                                                                            cGCCAGCAGTAATTTGAATTATTCATTATCACTTAGCCGCGTTTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAATATTTCGATTCCCt                                        <  2:3073910/149‑1 (MQ=255)
                                                                                                             gCCAGCAGTATTTTTAATTATTAATTAACACTTAGCCGCTATTTTGATATCGGGCAATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAATATTTCGATTCCCTg                                       <  1:1900378/149‑1 (MQ=255)
                                                                                                               cagctgTATTGTGATTTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAATATTTCGATTCCCTggg                                     <  2:90551/149‑1 (MQ=255)
                                                                                                                   agTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAATATTTCGATTCCCTGGGGAAc                                 >  1:1665490/1‑149 (MQ=255)
                                                                                                                    gTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAATATTTCGATTCCCTGGGGAACt                                >  1:1847153/1‑149 (MQ=255)
                                                                                                                    gTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAATATTTCGATTCCCTGGGGAACt                                >  2:598917/1‑149 (MQ=255)
                                                                                                                         gtgAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAATATTTCGATTCCCTGGGGAACtagtag                           >  2:3662063/1‑149 (MQ=255)
                                                                                                                         gtgAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAATATTTCGATTCCCTGGGGAACtagtag                           >  1:3700894/1‑149 (MQ=255)
                                                                                                                           taaTTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAATATTTCGATTCCCTGGGGAACTAGTAGaa                         <  1:5158729/148‑1 (MQ=255)
                                                                                                                           gAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAATATTTCGATTCCCTGGGGACCTAGTAGaa                         >  1:3101812/1‑149 (MQ=255)
                                                                                                                           gAATTATTCATTATCAATTCGCCGCGATTTTGATATCGGCCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAATATTTCGATTCACTGGGGAACTAGTAGaa                         <  2:3389700/149‑1 (MQ=255)
                                                                                                                             attattCATTATCACTTAGCCGCTATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAATATTTCGATTCCCTGGGGAACTAGTAGAACa                       >  1:958384/1‑149 (MQ=255)
                                                                                                                             attattCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAATATTTCGATTCCCTGGGGAACTAGTAGAACa                       <  2:192210/149‑1 (MQ=255)
                                                                                                                             attattCATTATCACTTAGCCGCGATTTTGATATCGGGCAATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAATATTTCGATTCCCTGGGGAACTAGTAGAACa                       <  2:1759405/149‑1 (MQ=255)
                                                                                                                              ttattCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAATATTTCGATTCCCTGGGGAACTAGTAGAACAt                      <  1:631815/149‑1 (MQ=255)
                                                                                                                              ttattCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAATATTTCGATTCCCTGGGGAACTAGTAGAACAt                      <  1:3867176/149‑1 (MQ=255)
                                                                                                                                 ttCATTATCACTTAGCCGCGATTTTTATATGGGGCAATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAATATTTCGATTCCCTGGGGAACTAGTAGAACATTGa                   <  1:3985036/149‑1 (MQ=255)
                                                                                                                                 ttCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAATATTTCGATTCCCTGGGGAACTAGTAGAACATTGa                   >  1:2469373/1‑149 (MQ=255)
                                                                                                                                  gaaTTATCCTTTAGCCGCTTTTTTTATAGCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAATATTTCGATTCCCTGGGGAACTAGTAGAACATTGAg                  <  1:930377/147‑1 (MQ=255)
                                                                                                                                   cATTATCACTTAGCCGCTATTTTGATATCGGGCAATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAATATTTCGATTCCCTGGGGAACTAGTAGAACATTGAGc                 <  1:2342673/149‑1 (MQ=255)
                                                                                                                                   atttATCACTTAGCCGCTATTTTGATATCGGGCAATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAATATTTCGATTCCCTGGGGAACTAGTAGAACATTGAGc                 <  1:2342649/147‑1 (MQ=255)
                                                                                                                                      tATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAATATTTCGATTCCCTGGGGAACTAGTAGAACATTGAGCTAt              >  1:466205/1‑149 (MQ=255)
                                                                                                                                             tAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAATATTTCGATTCCCTGGGGAACTAGTAGAACATTGAGCTATGGTATGc       <  1:4980153/149‑1 (MQ=255)
                                                                                                                                             tAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAATATTTCGAGTCCCTGGGGAACTAGTAGAACATTGAGCTATGGTATGc       <  2:216405/149‑1 (MQ=255)
                                                                                                                                                  gcgATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAATATTTCGATTCCCTGGGGAACTAGTAGAACATTGAGCTATGGTATGCAACGa  >  1:4193688/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                  
CACGAATTATCAGAATGAAAAAGAGAGTTATATTGTCACGTTTAACCAGTATCTTGAATCATTAAGGTTAAATACATACGTAAGTTTGGCTCGTAATACTTACTGGGACGCCAGCAGTAATGTGAATTATTCATTATCACTTAGCCGCGATTTTGATATCGGGCCATTAAAAAACGTCTCCACTTCTCTAACATTTAGCCGAATAAACTGGGAAGAAGACAACCAGGATCAACTGTACCTAAATATTTCGATTCCCTGGGGAACTAGTAGAACATTGAGCTATGGTATGCAACGA  >  CP009273/3182171‑3182465

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: