| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,263,315 | T→C | 8.0% | intergenic (+354/+260) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,263,315 | 0 | T | C | 8.0% | 733.0 / 38.2 | 250 | intergenic (+354/+260) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Reads supporting (aligned to +/- strand): ref base T (61/162); new base C (12/7); total (81/169) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.79e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 253 total aligned reads displayed.
CCGCATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAG > CP009273/3263168‑3263463 | cgcATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATATTTCTGCCCCACCAAAACTaa > 1:4828434/1‑149 (MQ=255) gcATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTaaa > 1:3710784/1‑149 (MQ=255) aTCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTaaaaa < 2:740326/149‑1 (MQ=255) aTCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTaaaaa < 2:1666841/149‑1 (MQ=255) tCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAAc > 2:36726/1‑149 (MQ=255) ccGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAACAGTAAAAAcc < 1:332593/149‑1 (MQ=255) cGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAAccc < 1:4026938/149‑1 (MQ=255) ggCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACccg > 2:1699176/1‑149 (MQ=255) ggCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTGTCTTTTGGGTATAGTGTCGTGGACAGTAATTAATCTTTCTGCCCCACCAAAAGTAAAAACccg > 1:493908/1‑149 (MQ=255) gCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACccgc < 1:2617069/149‑1 (MQ=255) cATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACccgcc < 2:3900956/149‑1 (MQ=255) aTGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACccgccg > 1:1199964/1‑149 (MQ=255) gAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGaa > 2:4145330/1‑149 (MQ=255) aTAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGc < 1:4720773/149‑1 (MQ=255) aTAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGc > 1:4989016/1‑149 (MQ=255) aGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGt < 1:874513/149‑1 (MQ=255) aGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCAATCATCTTTATTCCCCTCCAAAAGTAAAAAACCCCCGAAGCGGGt > 1:4880721/1‑149 (MQ=18) gcgcACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGt‑t < 1:3602180/149‑1 (MQ=255) gcgcACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGt‑t < 1:3601916/149‑1 (MQ=255) cgcACTCAACAATCTTAAACCCGCCGGATCGGTTTATTACGTACATCAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGt‑tt < 1:194814/149‑1 (MQ=255) cgcACTCAACAAGCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGt‑tt < 2:4909561/149‑1 (MQ=255) caaTCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTaaa < 1:1625935/149‑1 (MQ=255) actCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTaaaa < 2:2479660/147‑1 (MQ=255) aTCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTATGCCCCACCAAAAGTAAAAAACCGCCGAAGCGGGT‑TTTTACGTAAAAc > 1:4544131/1‑149 (MQ=255) aTCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCAGCTTTCTGTTGGGTATATTTTAGTGGACATTCAATCAAATTTATGCACCACCAAAAAAAAAAAAACACCCAAGCGGGTGTTTTAATTaaaa > 1:458248/1‑149 (MQ=255) tGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAgg < 2:2281509/149‑1 (MQ=255) gAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGt < 1:556862/149‑1 (MQ=255) aaaCCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGCCAGGCCTTAAACTTTCTTCCCCGCCCAAAGTAAAAACCCCCCGAACCGGGG‑TTTTACGTAAAAAAGGTg > 1:3508652/1‑149 (MQ=17) aaaCCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTg < 2:4830278/149‑1 (MQ=255) aCCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTATTCCCCTCCAAAATAAAAAAACCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGaa > 1:1016628/1‑149 (MQ=17) ccgccgGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGt < 1:1244630/127‑1 (MQ=255) gccgGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTg < 2:1654688/149‑1 (MQ=255) ccgGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGG‑TTTTACGTAAAACAGGTGAAACTGa > 1:5039194/1‑149 (MQ=255) cgGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGAc < 1:2253588/149‑1 (MQ=255) cgGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAATCAGGTGAAACTGAc < 2:4989016/149‑1 (MQ=255) aaCGGGTTATTAAGTACATCAGGTAAAACAGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACCGGCAATCATAAATCAGCCCCACCAAAAGTAAAAAACCCCCCAAGCCGGG‑TTTTAAATAAAAAAGGTGGAACTGACCGa > 2:2564872/1‑149 (MQ=9) tcGGTTTATTACGTACATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAACCAGGTGAAACTGACCGAt < 1:1986952/148‑1 (MQ=255) aCGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGAt < 2:4416462/149‑1 (MQ=255) ttttttACGTACATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAATCAGGTGAAACTGACCGATAAGc < 2:786019/149‑1 (MQ=2) tttATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGc < 2:3983790/149‑1 (MQ=255) tttATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGc > 2:2713593/1‑149 (MQ=255) ttattaCGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGcc < 2:4158018/149‑1 (MQ=255) ttattaCGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGcc < 2:2109415/149‑1 (MQ=255) ttattaCGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGcc < 2:309557/149‑1 (MQ=255) ttaCGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCAGCCCCACCAAAAGTAAAAAACCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGcg > 1:2884773/1‑148 (MQ=255) aCGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGcttt < 2:4378936/149‑1 (MQ=255) tACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttctt < 2:4094479/149‑1 (MQ=40) aCATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTTCGTAAAACAGGTGAAACTGACCGATAAGCCGctttcttt < 2:5055975/149‑1 (MQ=255) aTCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTg < 1:3438639/149‑1 (MQ=38) aGGTAAAACTGACCGATAAGCCGCTTTCTTTTGTGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:97416/149‑1 (MQ=37) aGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:2700582/149‑1 (MQ=37) aGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 2:911579/149‑1 (MQ=37) aGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:1679469/149‑1 (MQ=37) aGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 2:1986238/149‑1 (MQ=37) aGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATATTTCTGCCCCTCCAAAAGTAAAAAACCGCCGAAGCGGGT‑TTTTAAGTAAAACAGGTGAAACTGACCGATAAGCCGCTTGCTTGTgggg > 2:3645717/1‑148 (MQ=11) gTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGtat < 1:4465743/149‑1 (MQ=37) aaaaCTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAg < 1:5002190/149‑1 (MQ=35) aaaCTGACCGATAAGCCTCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgt < 1:3096811/149‑1 (MQ=25) cTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGTCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTc < 2:1311536/149‑1 (MQ=37) tGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCg < 2:2544396/149‑1 (MQ=37) gACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTGAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGt > 2:5120889/1‑149 (MQ=37) aCCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTg < 2:821375/149‑1 (MQ=37) aTAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACa < 1:3798429/149‑1 (MQ=37) tAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTAAACTTTCAGCCCCACCAAAAGTAAAAACCCCCCCAAGCGGGT‑TTTTAAGTAAAACATGTGAAAAAGACCCAAAATAACCATTATTATTGGTATAGAGACGTGGACAg > 1:1733226/1‑149 (MQ=2) aaGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTAATCTTTATGCCCCTCCAAAAGAAAAAACCCGCCCAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCGTTCTTTTTGGTATAGTTTAGTGGACAGt > 1:2952632/1‑149 (MQ=11) aGCCGCTTTCTTTTGTGTATAGTGTCGTGGACAGTCATTCATCTTTCGGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGtc < 2:4884629/149‑1 (MQ=255) aGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGtc > 2:3325490/1‑149 (MQ=21) gcagCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCATTCTGCCCCTCCAAAATTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTATTTTGGGTATAGAGTAGTGGCCAGtca > 2:1414315/4‑149 (MQ=11) gCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGtca < 2:1233824/149‑1 (MQ=37) gCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGtca > 2:1697851/1‑149 (MQ=17) gCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATATTTCTTCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTAAGTAAAACAGGTGAAACTGACCGATAAGCCGCGTTAATTTGGGTATAGTGTCTTggtaagtaa > 2:4009650/1‑142 (MQ=11) ccGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGtcat < 2:1199964/149‑1 (MQ=37) ctttctttTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAATCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGtcaatcc > 2:1930007/1‑148 (MQ=255) ctttctttTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGtcattca < 2:3902759/149‑1 (MQ=37) tttctttTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGtcattcat < 2:4877904/149‑1 (MQ=37) tctttTGGGTATAGTGTCGTGGACAGTCATTCCTCTTTCTGCCCCAACAAAAGTAAAAACCCGCCGAAGAGGGT‑TTTTACGTAAAACAGGTGAAACTGACCCATAAGCCGCTTTATTTTGGGTCTAGTGTCGTGGTCAGTAATTCATca > 1:623988/1‑148 (MQ=11) ctttTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCtt < 2:3752685/149‑1 (MQ=37) tttGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTc < 1:4689297/149‑1 (MQ=37) ataGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCt < 1:2355739/149‑1 (MQ=37) taGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGtcat < 1:1054657/132‑1 (MQ=37) taGTGTCGTGGACAGTCATTCATCTTTCTGCCCCACCAAAAGTAAAAAACCCCCCAAGCGGGT‑TTTTTAGTAAAACAGGTGAAAATGACCGATAAGCCGCGTTCTTTTGGGTATAGTGTCGTGGTCACTGAATAAAATTTCTGccccaa > 1:4047098/1‑147 (MQ=11) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTcc < 1:1459199/149‑1 (MQ=37) gtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCCTTCATAGTTGTGCACCTACaaa > 2:3182674/1‑149 (MQ=11) tCGTGGACTGTCATTCATCTTTCTGCCCCTCCAACAGTACAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCaaaa < 2:4602440/149‑1 (MQ=255) tCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCaaaa < 2:1311609/149‑1 (MQ=37) tGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCa < 1:2321242/149‑1 (MQ=37) tcattcatCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAAccc < 2:1365937/149‑1 (MQ=37) tcattcatCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAAccc < 1:435529/149‑1 (MQ=37) attcatCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGTAAAGTCATTCATCTTACTGCCCCTCCAAAAGCAAAAACccgc > 2:2819720/1‑149 (MQ=255) attcatCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACccgc < 1:4145330/149‑1 (MQ=37) ttcatCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACccgcc < 1:1531599/149‑1 (MQ=37) tttCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCg < 2:4917427/149‑1 (MQ=37) ttCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCgg < 2:631651/149‑1 (MQ=37) cTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGt < 2:1165811/149‑1 (MQ=37) tGCCCCTCAAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGtt < 1:4658596/149‑1 (MQ=37) gCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAACACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttt < 1:1599091/149‑1 (MQ=37) cccTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttttt < 1:4089849/149‑1 (MQ=37) ccTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGGCATTCATCGTGCAGCCCCACCAAAAGCAAAAACCCGCCGCAGCCGGTTTTTa > 2:1872624/1‑149 (MQ=11) aaaGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTaaa > 2:293640/1‑149 (MQ=37) tAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACCGGTGAAACTGACCGATCAGCCGCTTTCTTTTGGGTATAGGGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAg < 2:4047098/149‑1 (MQ=2) | CCGCATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGT‑TTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAG > CP009273/3263168‑3263463 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |