| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,385,479 | C→G | 11.0% | intergenic (‑92/+338) | tldD ← / ← yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,385,479 | 0 | C | G | 11.0% | 881.1 / 24.0 | 295 | intergenic (‑92/+338) | tldD/yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
| Reads supporting (aligned to +/- strand): ref base C (152/103); new base G (3/33); total (158/137) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.64e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 298 total aligned reads displayed.
CTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATG > CP009273/3385331‑3385625 | cTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTcc > 2:3381763/1‑149 (MQ=255) gATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCgg > 1:3124923/1‑149 (MQ=255) gATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCgg > 2:4806662/1‑149 (MQ=255) tttCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTg < 1:568082/149‑1 (MQ=255) aGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAgg > 1:4924540/1‑149 (MQ=255) gCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGcc < 1:729024/149‑1 (MQ=255) cGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTg < 2:2977975/149‑1 (MQ=255) gTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGa < 1:196224/149‑1 (MQ=255) ttCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGAt > 1:3720971/1‑149 (MQ=255) ttCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGAt > 1:3659742/1‑149 (MQ=255) tCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATa < 2:250625/149‑1 (MQ=255) ccgcTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGa < 2:2351306/149‑1 (MQ=255) aGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGcac < 1:1458124/149‑1 (MQ=255) aGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGcac > 1:2476622/1‑149 (MQ=255) ttGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGt < 1:2203715/149‑1 (MQ=255) gTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCg > 1:4689800/1‑149 (MQ=255) gTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCg > 1:2096845/1‑149 (MQ=255) gTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTGCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCg > 1:602364/1‑149 (MQ=255) gTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGGTATGTTCCGGTATGTAGGCCTGATAAGACTCACAGCGTCg > 1:3201331/1‑149 (MQ=255) cACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCAt > 1:1978908/1‑149 (MQ=255) cTTACCAGGATAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCTGAGTGAACGCCCTATCCAGCCTACGGTTATGTTCGGGTTTGTAGGCCTGATAAGACGAACAGCGTGGCATCa > 1:2499381/1‑149 (MQ=39) ttACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAg > 2:3473792/1‑149 (MQ=255) tACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAgg > 2:1272185/1‑149 (MQ=255) aCCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGc < 1:1797259/149‑1 (MQ=255) ccAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCa > 2:661211/1‑149 (MQ=255) ggTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACg > 1:1354406/1‑149 (MQ=255) ttAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGc > 2:4257824/1‑149 (MQ=255) aGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGt > 1:863090/1‑149 (MQ=255) gACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCATCCTACGGTTATGTTCAGGATAGTAGGCCTGATGAGACGAACAGCGTCGCATAAGGCCACGTCTGTc > 2:1926113/1‑149 (MQ=25) gACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTgac > 2:5019570/1‑147 (MQ=255) gACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTc > 2:4400821/1‑149 (MQ=255) gACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTc > 2:1808351/1‑149 (MQ=255) gACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTc > 2:4725567/1‑149 (MQ=255) aCTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCg > 1:348643/1‑149 (MQ=255) tCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGa > 1:4137448/1‑149 (MQ=255) tCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGGTAGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGCCTGTCGGa > 2:3128862/1‑149 (MQ=255) tCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCCCAGCGTCGCATCAGGCAACGGCTGTCGGATgc < 2:3419158/149‑1 (MQ=255) tCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTAAACGCCATATCCGACCTACGGTTATGTTCC‑GTTTTTAGGCCTGATAAAAAGCAAAGCCTACCATCAGGCAACCGCAGCCGGATgcg > 2:3630125/1‑149 (MQ=17) tttttGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATgcggc > 2:2787749/1‑149 (MQ=255) gCTACTCGTGAGTTCCTGCAGCCGAGGATTTTGTACGGCTGCCGGTTGCGGCGTGACCGCCCTATCCAGCCTACGGTTATGTTCCGGTTGGTAGGCCTGATAAGACGCACCGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTaaa < 2:4472391/149‑1 (MQ=18) cTACTCTTTTGTTACTGCATTTGTGTTTTTTTTCCGGCGGCCGGAGGCGGCGTGACCGCCCTATCCAGCCTACGGTTTTGTTCCGGTTTGTAGGCCTTATAAGACGCACCGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAAc < 2:4960547/149‑1 (MQ=17) aCTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCAGGATAGTAGGCCTGAGAAGAACCAAAGAGACGCATCACGCAAATGATGTAGGAAGAGGAGTAAACga > 2:2650883/1‑148 (MQ=21) cTCGTTAGTTACTGCAGTAGAGTATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGTTTATGTTCCGGTTTGTCGGCCTGATAAGACGCACCGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGcc < 2:4604117/149‑1 (MQ=255) cTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGcc < 2:303706/149‑1 (MQ=255) gttagttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTa < 2:814582/149‑1 (MQ=255) tttgttaCTGCCTTCGGGGTTTTTTTCGGGCTGCCGGTGGCGGCGTGACCGCCATACCCAGCCTACGTTTATGTTCGGTTTTGTCGGCCTGATAAGACGCACCGCGTCGCAACCGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTAt < 1:5177291/146‑1 (MQ=9) gttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATACTACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATACg > 1:1131810/1‑149 (MQ=255) aCTGCAGTAGTGTTTTTTTTACGGCTGCCGGTTGCGGCGTGAACGCCCTAGCCAGCCTACGTTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGAcc < 2:4397583/149‑1 (MQ=18) aCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGAcc > 1:1554778/1‑149 (MQ=255) aCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCATGAAAAGACGCACAGCGACGCAAAAGCCAACGGCTCTCGGATGCGGCGTAAACGCCTTATCCGAcc > 1:3509088/1‑149 (MQ=18) tGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGCCTGACGGATGCGGCGTAAACGCCATATCCGACCTa > 1:3641049/1‑149 (MQ=255) gCAGTAGAGGATTTTTTACGGCTGCCGGAAGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGATTGTAGGCCTGATAAGACGCAAATCGTCGCATAAGGCAACGGCTGTCGGATGCTGCGTAAACGCCTGATCCGACCTAc > 1:185844/1‑149 (MQ=18) aGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACgg > 1:3719623/1‑149 (MQ=255) ttgtgtaTTTTTTACGGCTGCCGGATGCGGCGTGAACGCCATATCCAGCCTAGGGTTTTGTTCCGGTTTGTTGGCCTGATAAGACGCACCGCGTCGAATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGtt < 2:553808/143‑1 (MQ=17) agagttttttttACGGCTGCGGGATGGGGCTTGAACGCCCTATCCACCCTACGGTTTTTTTCCGTTTTTTTGGCCTTATAAGACGCACAGCGTCGAATCAGCCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTa < 1:293772/143‑1 (MQ=17) gagGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGAAAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTAt > 1:4380521/1‑149 (MQ=255) ggATTTTTTCCGGCTGCCGGATGCGGCGTGAACGCCCGATCAAGCCTAGGGTTTTGTTCCGGTTTGTTGGCCTGATAAGACGCACAGCGTCGCAACAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGt < 2:2536721/149‑1 (MQ=17) ggATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGt > 1:2337046/1‑149 (MQ=255) gtttttttCCGGCGGCCGTTTGCGGCGTGAACGCCCTACCCCGCCTCCGTTTATTTTCCGGTTTGTCGGCCTTATAAGACGCACAGCGCCGCAACAGCCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGtt < 1:1691119/147‑1 (MQ=17) gtttttttACGGCTGCGGGTTGCGGCGTGAACGCCCTACCCAGCCTAGGTTTTTGTTCGGGTTTGTTGGCCTTATAAGACGCACCGCGTCGCATCCGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGtt < 2:476465/147‑1 (MQ=17) aTTTTTTAGGGCTGCCGGATGCGGCTTGAACGCCCTAACCAGCCTACGTTTATGTTCGGTTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTc < 2:1040709/149‑1 (MQ=17) ttttttCCGGCTGCCGGATGCGGCGTGAACGCCATATCCAGCCTACGGTTTTGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTcc < 2:4898874/149‑1 (MQ=255) ttttttACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTcc > 1:783213/1‑149 (MQ=255) tttttACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCg > 2:294546/1‑149 (MQ=255) ttttcgggcggcCGGCGGCGGCGTGACCGCCCTAGCCAGCAACGGGTTTGGGTCCGGTTGGTTGGCCTGATACGCCGCCCCGCGGCGCAACAGGCCACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGt < 1:2899119/143‑1 (MQ=9) tttCCGGCGGCCGGATGCGGCGTCACCGCCCTAACCACCCTCGGGTTTTGTGCGGTTTTGTTGGCCTGATAAGACGCACCGCGTCGCATCCGCCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGtt < 1:3962302/149‑1 (MQ=14) tttACGGCGGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACCGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGtt < 2:3359275/149‑1 (MQ=255) ttACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGTCTGTCGGAGGCGGCGTAGGCGCCTTGTCAGACCTACGGTTATGttaagttg > 2:751935/1‑143 (MQ=17) tcaCGGCGGCCGGTTGGGGCGTCAACGCCCTAACCCGACAACGGTTTTGTTCCGTTTTGTAGGCCTTATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGttt < 2:241015/147‑1 (MQ=14) tccggctgccggctgcGGCTTTAACGCCCTATCATGCCTTGGTTTTTTTTCGTGTTTTTAGCCCTTAAAAGACGCAATGCGTCGCATCTGCCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTg < 1:1482449/147‑1 (MQ=9) cGGCTGCCGGATGCGGCGTTAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTa < 2:3266866/149‑1 (MQ=255) ggcggcCGGTTGGGGCGTGCACGCCCTATCCCGCCTCGGGTTTTGTGCGGGTTTGTTGGCCTGATAAGACGCACCGGGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAg < 1:1602501/149‑1 (MQ=14) ggCTGCCGGTTGCGGCTTGAACGCCCTAACCAGCCTACGTTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACCGCGTCGAATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAg < 1:1243730/149‑1 (MQ=17) ggCTGCCGGATGGGGCGTGAACGCCCTCTCAAGCGTACGGTTATGTTCCGTTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAg < 2:3027661/149‑1 (MQ=14) cGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGACGGATGCGGCGTCAACGCCGTATCCGACCTACGGTTATGTTCGGGATCGAGGCCTGa > 2:4795413/1‑149 (MQ=14) cGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGACGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGa > 2:1509869/1‑149 (MQ=255) ggATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCGGGTTTGTAGGCCTGATAAGACGCACCGCGTCGCATCTGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGAt < 1:3363873/149‑1 (MQ=255) ggATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCAGTTTGTATGCCTGAt > 1:5078586/1‑149 (MQ=255) gATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTCAACGCCTTATCCGACCTCCGGTTCTGTTCCGTTTGTAGGCCTgttc > 2:3533829/1‑146 (MQ=255) tgggggctTGACCGCCCTCTCCCGCCTCGGTTTTTGTGCGGGTTTGTCGGCATTATACCACGCACCGGGGCGCATCCGGCCACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATaa < 1:2236843/145‑1 (MQ=2) aTGGGGCTTGACCGCCCTACCCACCCTAGGGTATTGTTCCGTTTTTTCGGCCTTAAAAGACGCACAGCGTCGCATCAGCCCACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATaa < 1:181357/149‑1 (MQ=14) ggcgTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTCCGGTTATGTTCCGTTTGTAGGCCTGATAAGACg > 1:2603665/1‑149 (MQ=255) ggcgTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACg > 1:4787702/1‑149 (MQ=255) tgtaCGCCCTAGCTAGCCTAGGTTTTTGTTCGGTTTTGTGGGCCTTATACGACGCACTGGGTCGCTTCAGGCCACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGcaca < 1:3809580/146‑1 (MQ=14) taaCGCCCTATCCTGCCTAGGTTTTTGTGCCGGTTTGTTGGCCTGATAAGACGCACAGCGTCGCATCCGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAg < 1:3382001/148‑1 (MQ=14) aaCGCCCTATCCAGCCTACGGTTATGTTACGGTTTGTAGGCCTGATAAGACGCACAGCGACGCATCAGGCAACGGCTGACGGATGCGGCGAAAACGCCTTATCCGACCTACGGTTATGTTCCTTTTTTTGGCATGATAAGACCCACAGc > 1:1277953/1‑149 (MQ=14) cGCCATATCCAGCATACGGTTTTGTTCCGGTTTGTAGGCATTAAAATACGCACAGCGTCGAATAAGCCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGt < 1:1065113/149‑1 (MQ=14) gCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTc > 2:3743676/1‑149 (MQ=255) gCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGACGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTc > 2:3796909/1‑149 (MQ=255) tATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCAt > 2:2007404/1‑149 (MQ=255) aTCCGGCCTACGGTTATGTTCCGGTTTGTAGGCATGATAAGACGCACAGCGTCGCAAAAGCCAACGCCTGACGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATCAGACGCACAGCGTCGCATc > 1:2291995/1‑149 (MQ=11) aTCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATc < 2:3437265/149‑1 (MQ=255) ccAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAg > 2:1158461/1‑149 (MQ=40) ccTACGGTTATGTGCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCaa < 2:216708/149‑1 (MQ=37) cTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAAc > 1:797044/1‑149 (MQ=37) tagggTTTTGTTCCGTTTTTTTGGCCTTATAAGACGCACAGCGTCGCATCTGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACg < 2:584673/146‑1 (MQ=11) aTGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGACGGATGCGGCGTGAACGCCATATCCGACCTACGGTTATGTTCAGGATGGAGGCCGGTTATCACGCACAGAGGCGCATCAGGCAACGGcgcccg > 2:1064793/1‑144 (MQ=11) gTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGa > 1:4251957/1‑149 (MQ=37) ttCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGAt > 1:4086797/1‑149 (MQ=35) ttCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGACGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCAGTTTCTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGAt > 1:2155769/1‑149 (MQ=16) | CTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATG > CP009273/3385331‑3385625 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |