| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,385,516 | A→T | 10.2% | intergenic (‑129/+301) | tldD ← / ← yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,385,516 | 0 | A | T | 10.2% | 686.6 / 12.9 | 288 | intergenic (‑129/+301) | tldD/yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
| Reads supporting (aligned to +/- strand): ref base A (161/76); new base T (2/32); total (163/125) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.77e-12 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 289 total aligned reads displayed.
CTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCC > CP009273/3385368‑3385662 | ttACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAg > 1:1396848/1‑149 (MQ=255) tACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAgg > 2:1272602/1‑149 (MQ=255) aCCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGc < 1:1797259/149‑1 (MQ=255) cAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCaa < 1:4839770/149‑1 (MQ=255) aGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGt > 1:863090/1‑149 (MQ=255) gACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCATCCTACGGTTATGTTCAGGATAGTAGGCCTGATGAGACGAACAGCGTCGCATAAGGCCACGTCTGTc > 2:1926113/1‑149 (MQ=25) gACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTc > 2:4400821/1‑149 (MQ=255) aCTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCg > 1:1275774/1‑149 (MQ=255) tCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGa > 1:4137448/1‑149 (MQ=255) cATCTTTTTTGATACTCGTTAGTTACTGAAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGAt < 2:2954774/149‑1 (MQ=255) aTCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATg > 2:2181640/1‑149 (MQ=255) tCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATgc > 1:3180681/1‑149 (MQ=255) tttttGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATgcggc > 1:2222374/1‑149 (MQ=255) ttGCTACTCGTTTGTTACTGCTGTCGTGGATTTTTTCCGGCTGCCGGAGGGGGCGTGACCGCCCTATCCAGCCTAGGTTTTTGTTCCGGTTTGTCGGCCTTATAAGACGCACAGCGTCGCATCTGGCAACGGCTGTCGGATGCGGCGTa < 1:3421562/149‑1 (MQ=18) ttGCTACTCGTTAGTTACTGCAGTAGCGGTTTTTTTCCGGCTGCCGGTTGCGGCGTGACCGCCCTCTCCAGCCTACGGTTATGTTCCGGTTTGTCGGCCTGATACGCCGCACCGCGGCGCATCAGGCAACGGCTGTCGGATGCGGCGTa < 2:2355135/149‑1 (MQ=37) gCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGATAGTAGGCCTTATAAAACGAAAATCGTCGAAACAAACAACGGCTGTCAGATGCGGCGTaaa > 2:4055180/1‑149 (MQ=25) gCTACTCGTGAGTTCCTGCAGCCGAGGATTTTGTACGGCTGCCGGTTGCGGCGTGACCGCCCTATCCAGCCTACGGTTATGTTCCGGTTGGTAGGCCTGATAAGACGCACCGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTaaa < 2:4472391/149‑1 (MQ=18) cTACTCTTTTGTTACTGCATTTGTGTTTTTTTTCCGGCGGCCGGAGGCGGCGTGACCGCCCTATCCAGCCTACGGTTTTGTTCCGGTTTGTAGGCCTTATAAGACGCACCGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAAc < 2:4960547/149‑1 (MQ=17) cTCGTTAGTTACTGCAGTAGAGTATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGTTTATGTTCCGGTTTGTCGGCCTGATAAGACGCACCGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGcc < 2:4604117/149‑1 (MQ=255) tctttagttaCTGCAGTCGAGTATTTTTTCCGGCTGCCGGAGGCGGCGTGAACGCCCTACCCAGCATACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGAATCAGGCAACGGCTGTCGTATGCGGCGTAAACGCCt < 2:572704/146‑1 (MQ=18) gttagttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTa < 2:814582/149‑1 (MQ=255) tttgttaCTGCCTTCGGGGTTTTTTTCGGGCTGCCGGTGGCGGCGTGACCGCCATACCCAGCCTACGTTTATGTTCGGTTTTGTCGGCCTGATAAGACGCACCGCGTCGCAACCGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTAt < 1:5177291/146‑1 (MQ=9) ttagttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTAt < 2:3349783/149‑1 (MQ=255) gttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATACTACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATACg > 1:1131810/1‑149 (MQ=255) gttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCg > 1:734996/1‑149 (MQ=255) aCTGCAGTAGTGTTTTTTTTACGGCTGCCGGTTGCGGCGTGAACGCCCTAGCCAGCCTACGTTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGAcc < 2:4397583/149‑1 (MQ=18) aCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCATGAAAAGACGCACAGCGACGCAAAAGCCAACGGCTCTCGGATGCGGCGTAAACGCCTTATCCGAcc > 1:3509088/1‑149 (MQ=18) tGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGACGGATGCGGCGTAAACGCCGTATCCGACCTa > 1:2512739/1‑149 (MQ=255) tGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGCCTGACGGATGCGGCGTAAACGCCATATCCGACCTa > 1:3641049/1‑149 (MQ=255) tGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCAGCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTTTCAGACCTa > 2:2580417/1‑149 (MQ=255) gCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCGGGATAGTTGGCCTGTGCCGACGCACATCGTCGCATCAGGCAACGCCTCTCTGATCCGGAGTAAACGACTTAGCAGACCTAc > 1:5125590/1‑149 (MQ=21) gCAGTAGAGGATTTTTTACGGCTGCCGGAAGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGATTGTAGGCCTGATAAGACGCAAATCGTCGCATAAGGCAACGGCTGTCGGATGCTGCGTAAACGCCTGATCCGACCTAc > 1:185844/1‑149 (MQ=18) aGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGACGGATGCGGCGTAAACGCCTTATCCGACCTACgg > 1:3720010/1‑149 (MQ=255) ttgtgtaTTTTTTACGGCTGCCGGATGCGGCGTGAACGCCATATCCAGCCTAGGGTTTTGTTCCGGTTTGTTGGCCTGATAAGACGCACCGCGTCGAATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGtt < 2:553808/143‑1 (MQ=17) gtggtttttttACGGCTGCCGGAGGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTTGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTAt < 2:3100531/144‑1 (MQ=255) gagGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGAAAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTAt > 1:4380521/1‑149 (MQ=255) ggATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGt > 1:2337046/1‑149 (MQ=255) gtttttttACGGCTGCGGGTTGCGGCGTGAACGCCCTACCCAGCCTAGGTTTTTGTTCGGGTTTGTTGGCCTTATAAGACGCACCGCGTCGCATCCGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGtt < 2:476465/147‑1 (MQ=17) gATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCATGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCTACCTACGGTTATGtt < 2:1688315/149‑1 (MQ=255) tttttttCCGGCGGCCGGGTGCGGCGTGAACGCCACACCCCGCCTACGTTTTGTTTCCGGTTTGTCGCCCTGACAAGACCCACCGCGGCGCTCCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTc < 1:545494/148‑1 (MQ=9) ttttttCCGGCTGCCGGATGCGGCGTGAACGCCATATCCAGCCTACGGTTTTGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTcc < 2:4898874/149‑1 (MQ=255) ttACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGTCTGTCGGAGGCGGCGTAGGCGCCTTGTCAGACCTACGGTTATGttaagttg > 2:751935/1‑143 (MQ=17) tcaCGGCGGCCGGTTGGGGCGTCAACGCCCTAACCCGACAACGGTTTTGTTCCGTTTTGTAGGCCTTATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGttt < 2:241015/147‑1 (MQ=14) tccggctgccggctgcGGCTTTAACGCCCTATCATGCCTTGGTTTTTTTTCGTGTTTTTAGCCCTTAAAAGACGCAATGCGTCGCATCTGCCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTg < 1:1482449/147‑1 (MQ=9) tACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTg > 1:4101557/1‑149 (MQ=255) tACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTg > 1:4022700/1‑149 (MQ=255) tACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTg > 1:3667211/1‑149 (MQ=255) cGGCTGCCGGATGCGGCGTTAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTa < 2:3266866/149‑1 (MQ=255) ggcggcCGGCGGCGGCGGGACCGCCCTAGCCAGCACCCGGTTTGGTTCGGGTTTGTTGGCCTTATACGACCCACCGCGTCGCATCCGCCCACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAg < 1:1602487/149‑1 (MQ=9) ggCTGCCGGTTGCGGCTTGAACGCCCTAACCAGCCTACGTTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACCGCGTCGAATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAg < 1:1243730/149‑1 (MQ=17) ggCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTAGGGTTTTGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAg < 2:3027681/149‑1 (MQ=255) ggCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCACCGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGGTTGTAg > 2:3617895/1‑149 (MQ=255) gCTGCCGGATGCGGCGTGAACGCCCTACCCCGCCTACGTTTATGTTCCGTTTTGTCGCCCTGATAAGACGCACCGCGTCGAAACAGCCCACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAgg < 1:2486501/149‑1 (MQ=14) cGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGACGGATGCGGCGTCAACGCCGTATCCGACCTACGGTTATGTTCGGGATCGAGGCCTGa > 2:4795413/1‑149 (MQ=14) aTGGGGCTTGACCGCCCTACCCACCCTAGGGTATTGTTCCGTTTTTTCGGCCTTAAAAGACGCACAGCGTCGCATCAGCCCACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATaa < 1:181357/149‑1 (MQ=14) aTGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTGTGTAGGCCTGATaa > 1:290696/1‑149 (MQ=255) gcgggttGACCGCCCTATCCCGCCTACGGTTATGTGCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGa < 2:1059150/143‑1 (MQ=14) cggcgTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACCGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGAc < 2:1242349/149‑1 (MQ=255) tgtaCGCCCTAGCTAGCCTAGGTTTTTGTTCGGTTTTGTGGGCCTTATACGACGCACTGGGTCGCTTCAGGCCACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGcaca < 1:3809580/146‑1 (MQ=14) gAACGCCCTATCCAGCCTAGGGTTTTGTTCGGGTTTGTCGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAg < 1:3381763/149‑1 (MQ=255) gAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAg > 1:4738060/1‑149 (MQ=255) gCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGACGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTc > 2:3796909/1‑149 (MQ=255) tATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCAt > 2:2007404/1‑149 (MQ=255) aTCCGGCCTACGGTTATGTTCCGGTTTGTAGGCATGATAAGACGCACAGCGTCGCAAAAGCCAACGCCTGACGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATCAGACGCACAGCGTCGCATc > 1:2291995/1‑149 (MQ=11) aTCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATc < 2:3437265/149‑1 (MQ=255) tCCAGCCTCGGTTTTTGTTCGGGTTTGTAGGCCTCATAAGACGCACAGGGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCa < 1:791663/149‑1 (MQ=11) tCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTTATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCa < 2:3517541/149‑1 (MQ=255) tCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCa > 2:3379539/1‑149 (MQ=40) tCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCa > 2:2706713/1‑149 (MQ=40) ccAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGACGCATCAg > 2:3753947/1‑149 (MQ=255) ccTAGGTTTATGGTCCGTTTTGTAGGCCTTATACGACGCACAGCGACGCATATGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCaa < 1:177855/149‑1 (MQ=11) tACGGTTTTGTTCCGGTTTGTAGGCCTGATAAGACGCACCGCGTCGCATCTGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACg < 2:2512705/149‑1 (MQ=255) ttATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGc > 1:3351180/1‑149 (MQ=37) aTGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCg > 2:1065064/1‑149 (MQ=37) gTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGa > 1:4251957/1‑149 (MQ=37) ttCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGAt > 2:2892439/1‑149 (MQ=35) ttCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGACGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCAGTTTCTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGAt > 1:2155769/1‑149 (MQ=16) tcgggTTTGTCGGCTTTTTACGCCGCCCGGCGTCGCATAGGGCACCGGGTGTGGGAGGCGGCTTAAACGCCTTATCCGACCTCCGGTTTTGTTCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATg < 2:1570861/146‑1 (MQ=11) gtttttGTCGGCCTTATAATACCCCCCGGGTCGCAACTGGCAAGGGCTGTGGGTTGCGGCTTAACCGCCTTAACCGACATACGTTTTTTTTCCGTTTTTTGGCCTTATAAGACGCACCGCGTCGCATCAGGCAACGGCTGCCGGATgcg < 2:1867836/146‑1 (MQ=2) ttGTCGGCATTAAAAGACGCACCGCGTCGAATCTGCCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACATCCGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGt < 2:431647/149‑1 (MQ=11) gCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCAGGTTGTAGGCCTGATAAGACGCAAAGAGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGc > 1:1049716/1‑149 (MQ=255) ctttaTACGACGAACTGGGTCGCATATGGAAACGGCTGTCGGTTGCGGGGTAAACGCCTTATCCGACCTACGGTTTTTTTCCTTTTGTTGGCCTTATAAGCCGCACCGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGcc < 2:5009464/145‑1 (MQ=11) tGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGTTAAGACGCACAGCGTCGCATCAGGCACCGGCTGCCGGATGCGGCGTAAACGccat > 2:1036971/1‑147 (MQ=19) tGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTCAACGccat > 1:2761136/1‑147 (MQ=17) aTAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCatat > 1:4901899/1‑149 (MQ=21) aTAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTAATACGACCAACGGTTATGATCCGGTTGTAGGCCTGATAATACGAACAGCGACGCATCAGGCAACGGCTGCCGGATGCGGCGGAAACGCCCTAt > 1:2264283/1‑149 (MQ=11) aaGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACGGCGGCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTGATcc > 1:2323873/1‑149 (MQ=255) aaGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATcc > 2:5152492/1‑149 (MQ=37) aGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCATATCCg > 1:1986860/1‑149 (MQ=21) aGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCATATCCg > 2:1961767/1‑149 (MQ=21) gACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGGTTGTTGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGAGGCGGCGAAAACCCCTTATCAGa > 1:1683862/1‑149 (MQ=11) aCGCACCGCGTCGCATCGGGCAACGGGTGTGGGTGGCGGGGTAAACGCCTTAGCCGCCCTCGGGTTTTGTTCGGTTTGTCGGCCTGATAAGACGCACCGCGTCGCATCTGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAc < 2:3146435/149‑1 (MQ=11) cgccccgCGTCGCATCTGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGTTTTTGTTCCGTTTGTAGGCCTGATAAGACGCACCGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAcc < 2:4689800/143‑1 (MQ=11) cGCACAGGGTCCCATCTGGCAACGGATGGCGGTTGCGGCGTAAACCCCTTATCCGACCTACGTTTTTTTTCGGTTTGTCGGCCTGATAAGACGCCCCGCGTCGCTTCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAcc < 2:602364/149‑1 (MQ=11) cGCACAGCGTCGCATCTGGAAACGGCTGGCGGATGGGGCTTAAACGCCTTATCCGACATACGTTTTTGTTCCGTTTGTCGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAcc < 2:2096845/149‑1 (MQ=11) cggCGTCGAATCTGGCAACGGCTGGCGGTTGCGGCGTAAACGCCTTAACCTACCCAGGTTTTTGTTCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATAAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACg < 2:1978908/147‑1 (MQ=11) gCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGt > 1:1295378/1‑149 (MQ=37) tCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTAt > 1:2598644/1‑149 (MQ=37) tCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTAt > 1:3030856/1‑149 (MQ=37) aTCTGGCACCGGCTGTCGGTTGGGGCTTAACCGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCTGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTc < 2:3456586/149‑1 (MQ=11) | CTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCC > CP009273/3385368‑3385662 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |