| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,385,702 | A→C | 5.5% | intergenic (‑315/+115) | tldD ← / ← yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,385,702 | 0 | A | C | 5.5% | 728.6 / 10.1 | 254 | intergenic (‑315/+115) | tldD/yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
| Reads supporting (aligned to +/- strand): ref base A (152/82); new base C (2/18); total (154/100) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.60e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 255 total aligned reads displayed.
ACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCG‑TAAACG‑CCTTATCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCAAATCATTGCGCTTTTTCTTTACGCGGTTGGCG > CP009273/3385555‑3385846 | aCCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCG‑TAAACG‑CCTTATCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCTTCAGGCaa > 2:1755322/1‑149 (MQ=37) cTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCG‑TAAACG‑CCTTATCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACg > 1:917588/1‑149 (MQ=35) gggTTATGTCCGGTGTGTCGGCCTGATAAGACCCACAGGGTCGCATCTGGCAACGGCTGCCGGATGCGGCG‑TAAACG‑CCTTATCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCt < 2:734996/148‑1 (MQ=11) cGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCG‑TAAACG‑CCTTATCCGACCTACGG‑TTATGTTCA‑GTTTGTAGGCCTGATCAGACGCACAGCGACGCAACAGGCCACGGCt > 2:3346142/1‑149 (MQ=11) cGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCG‑TAAACG‑CCGTATCCGACCTACGG‑TTAGGTTCC‑GGTTGTAGGCCAGATAAGACGCACACCGACGCATCAGGCCACGCCt > 2:202779/1‑149 (MQ=11) gTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCG‑TAAACG‑CCTTATCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCCTCGCATCAGGCAACGGCTGc > 2:4634622/1‑149 (MQ=25) gTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCG‑TAAACG‑CCTTATCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGAt > 2:3710796/1‑149 (MQ=35) tttGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCG‑TAAACG‑CCTTATCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATgcggcg > 1:1359590/1‑149 (MQ=32) tttGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCG‑TAAACG‑CCTTATCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATgcggcg > 1:149168/1‑149 (MQ=32) gTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCG‑TAAACG‑CCTTATCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGa > 2:4283198/1‑149 (MQ=33) aGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCG‑TAAACG‑CCTTATCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAAc > 1:4497846/1‑149 (MQ=34) ggCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCG‑TAAACG‑CCTTATCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACg > 2:1902498/1‑149 (MQ=34) ggCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCG‑TAAACG‑CCTTATCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACg > 1:2605797/1‑149 (MQ=34) aTAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCG‑TAAACG‑CCTTATCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTAt > 1:3537483/1‑149 (MQ=37) aacgtcgcgCAGCGTCGCATATGGCACCGG‑GGGCGGTTGGGGGGTTAAACG‑CCTAACCCG‑CCCACGGTTTATTTCCG‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATc < 2:2550945/144‑1 (MQ=2) gCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCG‑TAAACG‑CCTTATCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCt > 2:5129725/1‑149 (MQ=37) acaGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCG‑TAAACG‑CCTTATCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTAc > 2:4314643/1‑149 (MQ=37) gCGTCGCATCAGGCAACGGCTGCCGGATGCGGCG‑TAAACG‑CCTTATCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGt > 2:417490/1‑149 (MQ=37) gCGTCGCATCAGGCAACGGCTGCCGGATGCGGCG‑TAAACG‑CCTTATCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGt > 2:278550/1‑149 (MQ=37) gCGTCGCATCAGGCAACGGCTGCCGGATGCGGCG‑TAAACG‑CCTTATCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGt > 1:1782669/1‑149 (MQ=37) cATCAGGCAACGGCTGCCGGATGCGGCG‑TAAACG‑CCTTATCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTCTGtt > 2:3047527/1‑149 (MQ=37) cATCAGGCAACGGCTGCCGGATGCGGCG‑TAAACG‑CCTTATCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGtt > 1:3080459/1‑149 (MQ=37) cATCAGGCAACGGCTGCCGGATGCGGCG‑TAAACG‑CCTTATCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGtt > 2:3899308/1‑149 (MQ=37) ggCAACGGCTGCGGGTTGCGGCT‑TAAACG‑CCTTATCCGACCTACGT‑TTATTTTCC‑GTTTGTAGGCCTTATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGc < 2:4137448/149‑1 (MQ=14) ggCAACGGCTGCCGGATGCGGCG‑TAAACG‑CCTTATCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGc > 2:2785574/1‑149 (MQ=40) aaCGGCTGTCGGATGCGGCG‑TAAACG‑CCTTATCCGACCTACGG‑TCATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCg > 1:3383770/1‑149 (MQ=255) aaCGGCTGCCGGATGCGGCG‑TAAACG‑CCTTATCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTCTCCGACCTACGGTTATGTTCAGGCTCg > 2:4157215/1‑149 (MQ=255) cGGCTGCCGGATGCGGCG‑TAAACG‑CCTTATCCGACCTACGG‑TTTTGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGtt < 2:3774791/149‑1 (MQ=255) ggCTGCCGGATGCGGCG‑TAAACG‑CCTTATCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCACCGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTg > 2:1544026/1‑149 (MQ=255) ggCTGCCGGATGCGGCG‑TAAACG‑CCTTATCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTg > 2:3059984/1‑149 (MQ=255) ggCTGCCGGATGCGGCG‑TAAACG‑CCTTATCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTg > 2:894275/1‑149 (MQ=255) gCTGTCGGATGCGGCG‑TAAACG‑CCTTATCCGACCTACGG‑TCATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTgg < 2:3383770/149‑1 (MQ=255) tgacGGATGCGGCG‑TAAACG‑CCTTATCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGcc > 1:1951330/4‑149 (MQ=255) ggCCGTAGGCGGCT‑AAAACG‑CCTAATCCGCCCTCGGG‑TTATGTGCC‑GTTTGTCGGCCTGATAAGACGCACCGCGTCGCTTCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGcc < 2:3741108/148‑1 (MQ=14) gCCGGATGCGGCG‑TAAACG‑CCTTATCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCt > 2:2710769/1‑149 (MQ=255) cGGGTGGGGGG‑TTAACGCCCTTACCAGACCT‑CGG‑TTTTTTTCGGGTTTTTCGGCGTTATAACACGCACAGGGTCGAATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCtt < 1:3328074/149‑1 (MQ=9) ggATGCGGCG‑TAAACG‑CCTTATCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTg > 1:3196512/1‑149 (MQ=255) aTGCGGCG‑TAAACG‑CCTTATCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGc > 1:3756415/1‑149 (MQ=255) tGCGGCG‑TAAACG‑CCTTATCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCa > 1:1812534/1‑149 (MQ=255) tGCGGCG‑TAAACG‑CCTTATCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCa > 1:2429405/1‑149 (MQ=255) tGCGGCG‑TAAACG‑CCTTATCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCa > 2:4311746/1‑149 (MQ=255) gcggct‑TAAACC‑CAGTAGCCGACTTAGGT‑TTTTGTTCC‑GTTTGTTGTCATTTTAACAGGCACCGCGTCGCATCAGCCCACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCaa < 1:2013508/149‑1 (MQ=17) g‑TAAACG‑CCTTATCCGCCCTCCGG‑TTAGGTGCC‑GTTTGTAGGCCTGCTAAGTGGCACCGGGACGCATCTGGAAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGAtt < 2:4764520/149‑1 (MQ=17) tAACCG‑CCTTATCCGACCTCCGG‑TTATGTTCG‑GTTTGTAGGCCTGCTAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTa < 2:290696/149‑1 (MQ=255) tAAACG‑CCTTATCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTCTGTTCTGGCTCGTTGGCCTTTGGCAACGATTa > 1:4404117/1‑149 (MQ=255) aaaaCG‑CCTCTACCGACCTCGGT‑TTATGTTCG‑GTTTGTCGGCCGCAATAGACCCACAGCGTCTCATCTGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTa < 1:4257824/148‑1 (MQ=17) aaaCG‑CCTTATCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGGTCTGGCTCGTTGGCCTTTGGCAACGATTAt > 2:967799/1‑149 (MQ=255) aacgcgattACCCGACCTCGGT‑TTTTGTTCT‑GTTTTTCGGCCTTATAAGCCGCACCGGGTCGCATCCGCCCACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTCATGTTCTGGCTCGTTGGCCTTTGGCAACGATTAt < 1:3951312/142‑1 (MQ=21) aCG‑CCTTATCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATcc > 1:4179430/1‑149 (MQ=255) gacTTACCCGACATACGT‑TTTTGTCCC‑TTTTGTAGGCCTGATAAGCCGCACCGCGTCGCATCTGCCCACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTa < 1:4035105/147‑1 (MQ=18) ccTTATCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTAt > 2:3162448/1‑149 (MQ=255) cTTATCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATg > 2:283808/1‑149 (MQ=255) tCCGACCTCGGT‑TTTTGTTCC‑GTTTGTAGGCCTGATAAGACGCACCGGGTCGCTTCTGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGAt < 1:3454297/149‑1 (MQ=18) tCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACTCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGAt > 2:445270/1‑149 (MQ=255) tCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTCTGAGAt > 2:1613449/1‑149 (MQ=255) aCCTACGG‑TTATGTCCC‑GTTTTTAGGCCTGATACGACGCACCGCGTCGCATCAGCCCACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTggg < 2:1049716/149‑1 (MQ=21) tACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCa > 2:1298433/1‑149 (MQ=255) cggtattGTTCC‑GTTTTTAGGCCTGATAATACGCACAGCGTCGAATCTGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAAt < 1:1158461/143‑1 (MQ=21) ttttGTTCG‑TTTTGGAGGCCTTATAAGACGCACAGCGTCGAAACTGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTAc < 1:191682/146‑1 (MQ=21) tATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTAcg > 1:943250/1‑149 (MQ=255) gTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACgcgc > 1:3994407/1‑149 (MQ=255) gTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACgcgc > 1:3054527/1‑149 (MQ=255) ttCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGcc > 2:2187309/1‑149 (MQ=255) cc‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCt > 1:3745331/1‑149 (MQ=255) tttGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGt > 2:1851141/1‑149 (MQ=255) gTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCaa > 1:1683441/1‑149 (MQ=255) ttggacTGATAAGCCGCACCGCGTCGCAACAGGCCACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCaaa < 1:1425845/144‑1 (MQ=37) tAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCaaa > 2:604210/1‑149 (MQ=255) cggCCTGATACGCCGCCCCGCGTCGCATCCGGCCACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCAAAt < 1:1033619/148‑1 (MQ=37) cggCCTGATAAGACGCCCCGCGTCGCATCCGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCAAAt < 2:1359590/148‑1 (MQ=255) tGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGtt < 2:1268145/73‑1 (MQ=39) tGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGtt > 1:1268145/1‑73 (MQ=39) tGATAAGACGCACAGCGTCGCATCAGGCAACGGCGGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGGTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCAAATCATTg > 2:2134665/1‑149 (MQ=255) gATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCAAATCATTgc > 2:386947/1‑149 (MQ=255) tAAGACCCCCCGGGTCTCATCTGCCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCAAATCATTgcgc < 1:1062597/149‑1 (MQ=37) aaGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCAAATCATTGCGCt > 1:635757/1‑149 (MQ=255) agccGCACCGCGGCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCAAATCATTGCGCtt < 1:4914264/146‑1 (MQ=255) acacccacaGCGTCGCATCAGCCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCAAATCATTGCGCtt < 1:1884879/144‑1 (MQ=255) aGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCAAATCATTGCGCtt < 2:1275833/149‑1 (MQ=255) aGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCGGGCTCGAGGGCCGTTGGCAACGACAAACCGCCGAGAGTGCGGCACTTACGCGCCCTCGTCAAAACAGTgatcag > 2:4555854/1‑144 (MQ=17) gACGCACTGCGTCGCATCTGGCCACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCAAATCATTGCGCttt < 2:2264283/149‑1 (MQ=255) aCGCCCCGCGTCCCAACAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCAAATCATTGCGCtttt < 2:4081419/149‑1 (MQ=255) aCGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCAAATCATTGCGCtttt < 2:2155821/149‑1 (MQ=255) cccgCGTCGCATCCGGCAACGGCTGCCGGATGCGGCGTTAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCAAATCATTGCGCTTTTTCtt < 2:2292218/146‑1 (MQ=255) cgcttCGAATCAGGACACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCAAATCATTGCGCTTTTTCTTTa < 1:2711091/145‑1 (MQ=255) aGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCAAATCATTGCGCTTTTTCTTTa < 2:149168/149‑1 (MQ=255) gCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCAAATCATTGCGCTTTTTCTTTAc > 2:524426/1‑149 (MQ=255) ttCGCAGCAGGCAACGGCTGACGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCAAATCATTGCGCTTTTTCTTTAcgc < 2:3637522/148‑1 (MQ=255) gTCGCATCAGGCCACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCAAATCATTGCGCTTTTTCTTTAcgc < 2:4901899/149‑1 (MQ=255) gTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCAAATCATTGCGCTTTTTCTTTAcgc < 2:5078586/149‑1 (MQ=255) tCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCAAATCATTGCGCTTTTTCTTTAcgcg > 1:3347285/1‑149 (MQ=255) cGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCAAATCATTGCGCTTTTTCTTTACGCgg > 1:3366104/1‑149 (MQ=255) gCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCAAATCATTGCGCTTTTTCTTTACGCGGt > 2:1079348/1‑149 (MQ=255) tCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCAAATCATTGCGCTTTTTCTTTACGCGGTTgg > 2:214308/1‑149 (MQ=255) tCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCAAATCATTGCGCTTTTTCTTTACGCGGTTgg > 1:4221833/1‑149 (MQ=255) tCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCAAATCATTGCGCTTTTTCTTTACGCGGTTgg > 1:4806392/1‑149 (MQ=255) tCAGCCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCAAATCATTGCGCTTTTTCTTTACGCGGTTgg < 1:5190084/149‑1 (MQ=255) ctggCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCAAATCATTGCGCTTTTTCTTTACGCGGTTGgc < 2:917174/147‑1 (MQ=255) cAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCAAATCATTGCGCTTTTTCTTTACGCGGTTGgc < 2:2598644/149‑1 (MQ=255) aGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCAATTCATTGCGCTTTTTCTTTACGCGGTTGgcg > 2:704881/1‑149 (MQ=255) | ACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCG‑TAAACG‑CCTTATCCGACCTACGG‑TTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCAAATCATTGCGCTTTTTCTTTACGCGGTTGGCG > CP009273/3385555‑3385846 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |