| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,441,811 | C→T | 11.6% | K39K (AAG→AAA) | rpsQ ← | 30S ribosomal subunit protein S17 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,441,811 | 0 | C | T | 11.6% | 1009.5 / 92.3 | 320 | K39K (AAG→AAA) | rpsQ | 30S ribosomal subunit protein S17 |
| Reads supporting (aligned to +/- strand): ref base C (154/129); new base T (20/17); total (174/146) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.64e-01 | |||||||||||
Only 100 of 326 total aligned reads displayed.
TGTACTGTATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCTTCTCGTTCAGTAAAGTCTT > CP009273/3441664‑3441959 | gtACTGTATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCtt < 1:573109/149‑1 (MQ=255) cTGTATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTtgat < 1:609044/149‑1 (MQ=255) tATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGaa < 2:4016218/149‑1 (MQ=255) aTTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAAt > 1:2510579/1‑149 (MQ=255) aTTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAAt > 1:622920/1‑149 (MQ=255) ttACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGTTTGATGAAtt < 2:4233193/149‑1 (MQ=255) gaCAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCAGTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAAttt < 1:2798399/148‑1 (MQ=255) cAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTAc < 1:1902664/149‑1 (MQ=255) aaCCGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGt < 1:5029086/149‑1 (MQ=255) cGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGa < 2:196101/149‑1 (MQ=255) cTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATc > 1:1955558/1‑149 (MQ=255) tttCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCg > 1:4091170/1‑149 (MQ=255) ttCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCgg < 1:234768/149‑1 (MQ=255) tctcTACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGTTTGATGAATTTACCGTAGATCggg < 2:4621843/149‑1 (MQ=255) tctACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGgtg > 1:2081760/1‑149 (MQ=255) tctACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGgtg > 1:4115315/1‑149 (MQ=255) tctACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGgtg > 2:4887715/1‑149 (MQ=255) ctACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGgtgt < 1:892949/149‑1 (MQ=255) tACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGTTTGATGAATTTACCGTAGATCGGGTGtt < 2:3150749/149‑1 (MQ=255) aCAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGttt > 2:576228/1‑149 (MQ=255) aCGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTcac < 1:732717/149‑1 (MQ=255) cgcgAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTcaca > 1:2961729/1‑149 (MQ=255) cgAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACaaa > 2:3813902/1‑149 (MQ=255) gAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACaaaa > 2:4361209/1‑149 (MQ=255) aCCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGTTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACg > 2:5009601/1‑149 (MQ=255) ccAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGTTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGt < 1:3094372/149‑1 (MQ=255) cAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGtt < 2:505812/149‑1 (MQ=255) cAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGtt < 1:1170585/149‑1 (MQ=255) aGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTc > 1:4178234/1‑149 (MQ=255) gCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCTCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGAGCAGTTTGGTCGTACGCTTGATGAATATACCGTAGATCGGGTGTTTCACAAAACGTTCg > 2:2086997/1‑149 (MQ=255) gTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGAt < 2:4428074/149‑1 (MQ=255) tCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGTTTGATGAATTTACCGTAGATCGGGTGTTTCACAATACGTTCGATa > 2:3687372/1‑149 (MQ=255) ccAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAg < 1:4750826/149‑1 (MQ=255) ggATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGcaa > 1:3285139/1‑149 (MQ=255) ggATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGcaa < 2:3361297/149‑1 (MQ=255) ggATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGcaa > 2:2949651/1‑149 (MQ=255) ggATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGcaa > 2:4571869/1‑149 (MQ=255) aTTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGTTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGcaaca > 1:4137172/1‑149 (MQ=255) tttAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGcaacaa > 2:175355/1‑149 (MQ=255) tttAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGcaacaa > 2:4319538/1‑149 (MQ=255) gTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAAt > 1:4621337/1‑149 (MQ=255) gTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAAt < 1:3038234/149‑1 (MQ=255) tGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGAt > 2:4549998/1‑149 (MQ=255) tGGACAGCGGACGGCAGTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGAt < 2:3265475/149‑1 (MQ=255) gACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGAttt < 1:2746727/149‑1 (MQ=255) aCAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTtc > 2:4858337/1‑149 (MQ=255) aCAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTtc < 1:403573/149‑1 (MQ=255) cAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTtct > 2:3314733/1‑149 (MQ=255) gCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTcc < 2:1677626/149‑1 (MQ=255) ggACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGTTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCAt < 1:4246225/149‑1 (MQ=255) ggACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCAt < 1:1260897/149‑1 (MQ=255) gACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGTTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCAtt < 1:3830437/149‑1 (MQ=255) gACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCAtt < 2:1590593/149‑1 (MQ=255) gACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCAtt < 2:1195557/149‑1 (MQ=255) gACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCAtt < 2:676791/149‑1 (MQ=255) gACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCAtt < 1:1783610/149‑1 (MQ=255) aCGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCAttt > 1:3546163/1‑149 (MQ=255) cATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTc > 1:1941564/1‑149 (MQ=255) aTTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGTTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCg > 2:42784/1‑149 (MQ=255) ttCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGc < 1:1002238/149‑1 (MQ=255) gATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTaacga > 1:1117085/1‑147 (MQ=255) tttCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAAcg > 2:234086/1‑149 (MQ=255) aCCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGAcc > 1:1351683/1‑149 (MQ=255) aCCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGAcc > 1:3948882/1‑149 (MQ=255) ccACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGTTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCt < 1:934643/149‑1 (MQ=255) aCGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTg > 2:2995626/1‑149 (MQ=255) tCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCag > 2:4738645/1‑149 (MQ=255) cACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCaga > 2:2740806/1‑149 (MQ=255) ccGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGt < 2:387334/149‑1 (MQ=255) ccGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAAAAATGGATTTCTCCATTTTTTCGCTAACAACGCGACCTTGCAGAGt > 1:4497990/1‑149 (MQ=255) gATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTAc > 1:4773390/1‑149 (MQ=255) aTACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACg > 1:4376291/1‑149 (MQ=255) aTACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACg > 2:3526839/1‑149 (MQ=255) aCCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGa < 1:2107094/149‑1 (MQ=255) cATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGAtttt < 1:4645699/149‑1 (MQ=255) ttgttCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGt < 1:3627054/149‑1 (MQ=255) ttgttCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGt > 1:3622222/1‑149 (MQ=255) ttCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCAt < 1:2228820/149‑1 (MQ=255) ttCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCAt < 1:3440083/149‑1 (MQ=255) tctcGTCATGTACGTGCAGTTTGGTCGTACGTTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCAtt < 2:2531777/149‑1 (MQ=255) tctcGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCAtt < 1:791505/149‑1 (MQ=255) tctcGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCAtt > 2:2809779/1‑149 (MQ=255) tcGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTAc > 1:1028138/1‑149 (MQ=255) tCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCa > 2:4605593/1‑149 (MQ=255) cATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACACCGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCAc > 1:217177/1‑149 (MQ=255) cATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCAc > 1:1387082/1‑149 (MQ=255) tGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCAccc > 2:3351077/1‑149 (MQ=255) tACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGc > 1:5085629/1‑149 (MQ=255) gTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCtt > 2:270051/1‑149 (MQ=255) tttGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCTTCTCggt > 2:2469247/1‑147 (MQ=255) tttGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCTTCTCGtt < 1:4881360/149‑1 (MQ=255) tttGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCTTCTCGtt < 1:2481816/149‑1 (MQ=255) gTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCTTCTCGTTCAGt > 1:4145862/1‑149 (MQ=255) gTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCTTCTCGTTCAGTaaa < 1:2650295/149‑1 (MQ=255) tACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCTTCTCGTTCAGTAAAg > 2:1389400/1‑149 (MQ=255) tACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCTTCTCGTTCAGTAAAg > 1:2316845/1‑149 (MQ=255) tACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCTTCTCGTTCAGTAAAg > 2:1388861/1‑149 (MQ=255) gCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCTTCTCGTTCAGTAAAGTCt > 1:469312/1‑149 (MQ=255) cTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCTTCTCGTTCAGTAAAGTCtt > 2:2934952/1‑149 (MQ=255) cTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCTTCTCGTTCAGTAAAGTCtt < 1:1485922/149‑1 (MQ=255) | TGTACTGTATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCTTCTCGTTCAGTAAAGTCTT > CP009273/3441664‑3441959 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |