| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,530,481 | G→T | 17.2% | R104L (CGT→CTT) | greB → | transcript cleavage factor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,530,481 | 0 | G | T | 17.2% | 1031.0 / 146.8 | 330 | R104L (CGT→CTT) | greB | transcript cleavage factor |
| Reads supporting (aligned to +/- strand): ref base G (151/122); new base T (27/30); total (178/152) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.08e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 334 total aligned reads displayed.
TGCGTGAAATCGACCGTCGCGTGCGCTATCTCACTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGTTAATGCTATC > CP009273/3530334‑3530629 | tGCGTGAAATCGACCGTCGCGTGCGCTATCTCACTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAATCGACGATGGCGTGACTCACCGTTTCCGt > 1:74808/1‑149 (MQ=255) gAAATCGACCGTCGCGTGCGCTATCTCACTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGt > 1:4370383/1‑149 (MQ=255) aaaTCGCCCGGCGCGTGCGATATCTCAATAATTGCCTGGAAAATCTAAAAATCGTCGTTTACCCCCCTCCGCAGTAAGGAAAATTCTTTTTGGGCGCG‑TGGGTGGATATTTAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTc < 1:2491028/149‑1 (MQ=255) aaTCGACCGTCGCGTGCGCTATCTCACTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCCGCAGGAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCTTATTGTCg > 1:2597856/1‑149 (MQ=255) aaTCGACCGTCGCGTGCGCTATCTCACTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCg > 2:226876/1‑149 (MQ=255) tCGACCGTCGCGTGCGCTATCTCACTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGc < 2:2994632/149‑1 (MQ=255) cGTCGCGTGCGATATCTCACTAAATGCCTGTAAAATCTCAAAATCGTCTTTTACTCCCCTCAGCAGTAAGGAAATGTTTTTTTTGGGGCG‑TGGGTGGAGATTTAAAACGACGATGGCGTGACTCACCGTTTCCTTATTGTCGGCTACGa < 1:2889398/149‑1 (MQ=255) gTCGCGTGCGCTATCTCACTAAATGCCGGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGATGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCTTATTGTCGGCTACGAt < 2:1186349/149‑1 (MQ=255) cgggTGCGCTATCTCACTAAAGGCCTGGAAAATCTCAAACGCGTCGATTCCGCCCCGCCGCCGGAAGGCAAAGTCTTTTTGGGCGGG‑TGGGGGGAGATTGAACACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGa < 2:1413220/146‑1 (MQ=255) gcgTGCGCTATCTCACTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGaa > 1:4596331/1‑149 (MQ=255) gcgcTATCTCACTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAAttt > 2:3123547/1‑149 (MQ=255) tATCTCACTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTgg > 1:4184024/1‑149 (MQ=255) aTCTCAATAAATGCCTGTAAAATATCAAAATCGTCTATTACTCCCCTCAGCAGGAAGGCAATTTCTTTTTTGGCGGG‑TGGGTGTAGATTTAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGc < 1:216964/149‑1 (MQ=255) ctcACTAAATGCCTGGAAAATCTCAAAATCGTCGTTTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTGGGCGCG‑TGGGTGGAGATTGAACACGACGATGGCGTGACTCACCGTTTCCTTATTGTCGGCTACGATGAAATTTTTGGCCg < 2:3688692/149‑1 (MQ=255) aCTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTaa > 2:3737300/1‑149 (MQ=255) cTAAATGCCTTTAAAATCTAAAAAGCGTCTATTACGCCCATCCGCCGTATGTAAATTTATTTTTGGGGGGG‑TGGGTGTAGTTTTAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTaaa < 1:3935442/149‑1 (MQ=255) cTAAATGCCTGTAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCTTATTGTCGGCTACGATGAAATTTTTGGCCGTaaa < 2:3411874/149‑1 (MQ=255) aaaTGCCTGTAAAATCTCAAAATCGTCTATTACTCCCCTCAGCAGTAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGTATATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGa < 2:3298879/149‑1 (MQ=255) tGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCTTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTa > 2:3554386/1‑149 (MQ=255) tGGAAAATCTCAAAAGCGTCTATTACTCCCCTCAGCAGGAAGGAAAAGTCTTTTTTGGCGGG‑TGGGTGGAGTTTGAACACGACGATGGCGTGACTCACCGTTTCCTTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACAtc < 1:3429441/149‑1 (MQ=255) gtaaaaTCTAAAAATCGTCGATTACTCCCCTCAGCAGTAAGGCAAAGTATTTTTTGGCGCG‑TGGGTGGATATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACAtct < 2:4956283/147‑1 (MQ=255) ggAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCTTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACAtct > 2:4165901/1‑149 (MQ=255) ggAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCTTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACAtct > 2:1570658/1‑149 (MQ=255) aaTCTCAAAATCGTCGTTTACTCCCCTCCGCTGGACGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCTTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTAt < 2:2756751/149‑1 (MQ=255) aTCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAATGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATc < 2:1269183/149‑1 (MQ=255) aTCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATATTTGGCCGTAAAGATTACATCTCTATc > 2:85478/1‑149 (MQ=255) tctcAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCg > 1:1934762/1‑149 (MQ=255) ctcAAAATCGTCGTTTACTCCCCTCAGCAGTAAGGCAAAGTCTTTTTTGGCGGG‑TGGGTGGAGATTTAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGa < 2:4554340/149‑1 (MQ=255) ctcAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGa > 2:4768095/1‑149 (MQ=255) tcAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGAt > 1:891967/1‑149 (MQ=255) tcAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGAt > 1:1144932/1‑149 (MQ=255) tcAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGAt > 1:4234012/1‑149 (MQ=255) cAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGAtt > 2:4291056/1‑149 (MQ=255) aaactggtcgATTACTCCCCTCAGCAGTATGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTc < 2:4106761/143‑1 (MQ=255) aaaaTCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTc > 1:956911/1‑149 (MQ=255) aaaTCGTCTTTTACTCCCCTCAGCCGGATGGCAATGTCTTTTTTGGCGGG‑TGGGTGGAGATTTAAAACGACGATGGCGTGACTCACCGTTTCCTTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTcc < 1:2753451/149‑1 (MQ=255) aaaTCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCTTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTcc > 1:1891034/1‑149 (MQ=255) aaaTCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTcc > 1:2413679/1‑149 (MQ=255) aaaTCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTcc > 1:4277189/1‑149 (MQ=255) aaaTCGGCGATTACTCCCCTCCGCAGGAAGGAAATGTTTTTTTGGGGGGG‑TGGGTGGATATTTAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTcc < 1:512600/149‑1 (MQ=255) gtcgATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGAt > 2:1797895/1‑149 (MQ=255) gtcgATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGAt > 2:4825023/1‑149 (MQ=255) tcgTTTACTCCCCTCAGCTGTATGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATg < 2:2165193/149‑1 (MQ=255) aTTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCTTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGcc > 2:607722/1‑149 (MQ=255) aTTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGcc > 1:4726549/1‑149 (MQ=255) aTTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGcc > 2:4159744/1‑149 (MQ=255) aTTACTCCCCACAGCAGTACGGCAACGTCTTTTTTGGCGGG‑TGGGGGGAGTTTGAACACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGcc < 2:2499203/149‑1 (MQ=255) tACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCcg > 2:2408873/1‑149 (MQ=255) aCTCCCCTCAGCAGGAAGGCAAAGTC‑TTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCcgcg > 1:5032420/1‑149 (MQ=255) cccTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCAt > 1:2020308/1‑149 (MQ=255) cccACAGCAGTAAGGAAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTTAAAACGACGATGGCGTGACTCACCGTTTCCTTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCAt < 2:2671432/149‑1 (MQ=255) tCAGCAGGAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGc > 1:3280039/1‑149 (MQ=255) tCAGCAGGAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGc > 1:680549/1‑149 (MQ=255) agcagGAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATAGTCGGCTACGATTAAATTTTTGTCCGTAAAGATTACATCTCTATCGATTACCCGATGGCCCGCGCATTGCTg > 2:4248315/1‑149 (MQ=255) gcagGAAGGCAATGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCTTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGa < 2:3468452/149‑1 (MQ=255) gcagGAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCTTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGa > 2:290105/1‑149 (MQ=255) ggAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGaaaa > 2:4913470/1‑149 (MQ=255) ttaGGAAATGTTTTTTTTGGCGGT‑TGGGTGTTGTTTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGaaaaa < 1:145616/147‑1 (MQ=255) gAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGaaaaa > 1:4913368/1‑149 (MQ=255) gAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGaaaaa > 1:5183690/1‑149 (MQ=255) agggCAACGTCTTTGTGGGCGGG‑TGGGTGGAGCTTGAACACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTGGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGaaaaaa < 2:3600575/147‑1 (MQ=255) aGGCAATGTCTTTTTTGGCGGG‑GGGGTGGTGATTGAACACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAaag < 1:123163/149‑1 (MQ=255) gCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAaagaa > 2:5120329/1‑149 (MQ=255) gCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAaagaa > 2:359239/1‑149 (MQ=255) gCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAaagaa < 2:635803/149‑1 (MQ=255) aaatttttttttGGGGGGTTGGGTGTATTTTTAACACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAaagaag < 1:1320634/143‑1 (MQ=255) tCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGc > 2:3264641/1‑149 (MQ=255) cgcg‑TGGGTGGAGATGGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCgg < 2:1522848/149‑1 (MQ=255) gcg‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGACCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCggt > 1:3256209/1‑149 (MQ=255) g‑tgggtggAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCTTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCggtgg > 1:2534535/1‑149 (MQ=255) gtggAGATTTAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGaa < 1:3635973/149‑1 (MQ=255) tggAGATTGAACACGACGATGGCGTGACTCACCGTTTCCTTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAAt < 2:900847/149‑1 (MQ=255) gagaTTGAAAACGACGATGGCGTGACTCACCGTTTCCTTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATAc > 2:1959707/1‑149 (MQ=255) aTTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATAcccc < 2:1107755/149‑1 (MQ=255) gAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATACACCGATGGCCCGCGCATAGCTGAAAAAATAAGTCGGCGAACTCGCGGTGGTGAATACCCCAGc > 2:3872251/1‑149 (MQ=255) aaaCGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCg > 2:4029447/1‑149 (MQ=255) aaCGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCgg < 2:4711100/149‑1 (MQ=255) acgaTGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGaa < 2:227705/149‑1 (MQ=255) acgaTGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTG‑AAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAg < 2:4370383/149‑1 (MQ=255) cgaTGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAg < 1:3981789/149‑1 (MQ=255) gaTGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGc < 2:1692158/149‑1 (MQ=255) aTGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCg < 2:280643/149‑1 (MQ=255) gCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGc < 1:1662121/149‑1 (MQ=255) gCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGc < 1:2977916/149‑1 (MQ=255) gTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTg > 1:315550/1‑149 (MQ=255) cTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTAt < 1:3568075/149‑1 (MQ=255) cACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGt > 1:1094395/1‑149 (MQ=255) cACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGt > 1:3689554/1‑149 (MQ=255) cACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGt < 2:3632934/149‑1 (MQ=255) tttCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAATAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGTTAATg > 1:174064/1‑149 (MQ=255) tttCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGTTAATg > 1:227446/1‑149 (MQ=255) tttCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGTTAATg > 1:4431185/1‑149 (MQ=255) tttCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGTTAATg > 2:4451463/1‑149 (MQ=255) tttCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGTTAATg > 1:1789851/1‑149 (MQ=255) ttCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGTTAATGc < 1:621241/149‑1 (MQ=255) ccGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGTTAATGCTa < 1:3783529/149‑1 (MQ=255) ccGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGTTAATGCTa < 2:1778986/149‑1 (MQ=255) cGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGTTAATGCTAt > 2:1425266/1‑149 (MQ=255) cGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGAGTCCCCGAGGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGTTAATGCTAt < 1:533311/149‑1 (MQ=255) gTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGTTAATGCTATc < 2:4061670/149‑1 (MQ=255) | TGCGTGAAATCGACCGTCGCGTGCGCTATCTCACTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCG‑TGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGTTAATGCTATC > CP009273/3530334‑3530629 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |