| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,579,422 | C→A | 5.9% | E254D (GAG→GAT) | ggt ← | gamma‑glutamyltranspeptidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,579,422 | 0 | C | A | 5.9% | 1298.6 / 42.0 | 336 | E254D (GAG→GAT) | ggt | gamma‑glutamyltranspeptidase |
| Reads supporting (aligned to +/- strand): ref base C (143/173); new base A (6/14); total (149/187) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.47e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.38e-01 | |||||||||||
Only 100 of 350 total aligned reads displayed.
GGATTTGTACGATATGGATCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCGCCCTCTTTCCAGAAGATAGCTTTAC > CP009273/3579274‑3579570 | ggATTTGTACGATATGGATCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCAtc < 2:952502/149‑1 (MQ=255)ggATTTGTACGATATGGATCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCAtc < 2:446659/149‑1 (MQ=255) gATTTGTACGATATGGATCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCAtct < 1:2822833/149‑1 (MQ=255) tttGTACGATATGGATCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTcc < 1:5074565/149‑1 (MQ=255) tttGTACGATATGGATCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTcc > 2:2271619/1‑149 (MQ=255) tttGTACGATATGGATCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTcc > 2:3344683/1‑149 (MQ=255) tttGTACGATATGGATCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATATcc < 2:2104734/149‑1 (MQ=255) ttGTACGATATGGATCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCt < 2:4618836/149‑1 (MQ=255) tGTACGATATGGATCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTg > 1:4370931/1‑149 (MQ=255) gTACGATATGGATCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTgg < 2:2921503/149‑1 (MQ=255) gTACGATATGGATCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTgg < 2:1203727/149‑1 (MQ=255) gTACGATATGGATCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTgg > 1:2151999/1‑149 (MQ=255) gTACGATATGGATCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTgg < 1:1165382/149‑1 (MQ=255) gATATGGATCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGa > 2:4369457/1‑149 (MQ=255) atatGGATCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGAt < 2:4033101/149‑1 (MQ=255) tGGATCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGATTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTATTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTg > 1:74620/1‑149 (MQ=255) tGGATCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTg < 1:3975965/149‑1 (MQ=255) aTCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTc > 2:30067/1‑149 (MQ=255) aTCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTc > 1:4133388/1‑149 (MQ=255) tCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTcc > 2:2578608/1‑149 (MQ=255) gccgGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCaa < 1:157941/149‑1 (MQ=255) ggaggaTGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCg > 1:4802444/1‑149 (MQ=255) gaggaTGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGt < 1:5021831/149‑1 (MQ=255) ggaTGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGc > 2:1035156/1‑149 (MQ=255) ggaTGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGc < 1:2705489/149‑1 (MQ=255) gaTGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGcc < 2:3644585/149‑1 (MQ=255) gaTGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATATCCTGGGCGATCTGTTCCGCAATCGTGcc < 1:574510/149‑1 (MQ=255) aTGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCt > 1:4684389/1‑149 (MQ=255) tGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCtt < 1:3765666/149‑1 (MQ=255) gCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTta < 1:3461722/149‑1 (MQ=255) gCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTta < 1:3668547/149‑1 (MQ=255) ggTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTtata < 1:319164/149‑1 (MQ=255) ggTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTtata < 2:3109352/149‑1 (MQ=255) cATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGACtt > 2:4707330/1‑149 (MQ=255) cATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAAtt < 1:1356088/149‑1 (MQ=255) cATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAAtt > 2:4953581/1‑149 (MQ=255) aTGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATATCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTc < 1:781705/149‑1 (MQ=255) tGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCg > 1:1255156/1‑149 (MQ=255) gAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTc < 1:1796764/149‑1 (MQ=255) aCCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGcc > 1:129032/1‑149 (MQ=255) ccTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCg > 1:3819580/1‑149 (MQ=255) cTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGt < 2:712850/149‑1 (MQ=255) cTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGt > 1:3090030/1‑149 (MQ=255) aCCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCa > 2:1752710/1‑149 (MQ=255) aCCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCa > 1:2488755/1‑149 (MQ=255) tAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAatcat < 1:96039/149‑1 (MQ=255) aaTCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAatcatc < 1:2054448/149‑1 (MQ=255) tCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTTCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTAAGCAatcatcac > 1:1677309/1‑147 (MQ=255) cgccgcTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTcc < 2:4523655/149‑1 (MQ=255) gccgcTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCa < 2:560221/149‑1 (MQ=255) ccgcTTATCGGAGTGCGTTCGACCGCTTGATAGGCTGCTAAATCGTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAg < 2:3258794/149‑1 (MQ=255) ttATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGctc < 2:2871964/149‑1 (MQ=255) ttATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGctc > 2:3809757/1‑149 (MQ=255) ttATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGctc > 1:3723897/1‑149 (MQ=255) ttATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATATCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGctc < 1:2151527/149‑1 (MQ=255) tATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGctct > 1:670502/1‑149 (MQ=255) aTCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCtt > 2:5116466/1‑149 (MQ=255) tCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAACTCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCttt < 2:3842367/149‑1 (MQ=255) gTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAg < 1:1017557/149‑1 (MQ=255) gCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCCCCAGGCTCTTTGCCAGGt < 2:1431224/149‑1 (MQ=255) cGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGtt < 1:2310768/149‑1 (MQ=255) gTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTc < 1:4191745/149‑1 (MQ=255) gACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTAAGCAATCATATCCAGGCTATTTGCCAGGTTCGCCt > 1:3542181/1‑149 (MQ=255) gCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCAc > 2:4255383/1‑149 (MQ=255) gCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCAc > 2:3714801/1‑149 (MQ=255) ctgctAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCg > 1:2954928/1‑149 (MQ=255) gctAAATCTTCTGTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGATCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGcc > 2:1542533/1‑149 (MQ=255) ctAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGccc > 2:4694827/1‑149 (MQ=255) tAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCt < 2:2060979/149‑1 (MQ=255) tAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCAAATCCAGGCTCTTTGCCAGGTTCGCCAGCACCAGCGTGTCGCCCt > 1:1865424/1‑149 (MQ=255) aaaTCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCtt < 2:2811129/149‑1 (MQ=255) aaaTCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCtt > 2:1824571/1‑149 (MQ=255) aaTCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCACCGTGTCGCCCttt > 1:2764006/1‑149 (MQ=255) tcttctTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCAACTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCttttt > 1:1361946/1‑149 (MQ=255) cttcttTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTc < 2:2376267/149‑1 (MQ=255) cttcttTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTc > 2:131465/1‑149 (MQ=255) cttTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGc > 1:2122205/1‑149 (MQ=255) ttAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCgg > 2:508933/1‑149 (MQ=255) tGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCg > 2:3037395/1‑149 (MQ=255) aTCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCGcc > 2:1654557/1‑149 (MQ=255) tCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCGccc > 1:4263683/1‑149 (MQ=255) tCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCGccc < 1:2649951/149‑1 (MQ=255) aGCCACCGTTTTTCTGCATATCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCGCCctct < 2:5148478/149‑1 (MQ=255) gCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCGCCCTCtt > 2:4004946/1‑149 (MQ=255) ccACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCGCCCTCttt < 2:2968780/149‑1 (MQ=255) ccACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCGCCCTCttt < 1:4476568/149‑1 (MQ=255) cACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCGCCCTCTTTc < 1:1157260/149‑1 (MQ=255) aCCGTTTTTCTGCATATCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCGCCCTCTTTcc < 2:649165/149‑1 (MQ=255) ccGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCCGGTTCGCCTGCACCAGCGTGTCGCCCATTTTCAGCGGCTCGCCCTCTTTCCa > 2:1379084/1‑149 (MQ=255) ccGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCGCCCTCTTTCCa < 1:5117495/149‑1 (MQ=255) ccGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCGCCCTCTTTCCa < 1:2571422/149‑1 (MQ=255) tttttCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCGCCCTCTTTCCagaa < 2:2641887/149‑1 (MQ=255) tttttCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCGCCCTCTTTCCagaa < 2:3538444/149‑1 (MQ=255) ttCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCGCCCTCTTTCCAGAAGAt < 2:4840177/149‑1 (MQ=255) tCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCGCCCTCTTTCCAGAAGATa < 1:1067924/149‑1 (MQ=255) gCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCGCCCTCTTTCCAGAAGATAGCt < 2:1242484/149‑1 (MQ=255) cATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCGCCCTCTTTCCAGAAGATAGCtt < 2:1949599/149‑1 (MQ=255) cATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATAAAAACCACGCTCTTTGCCAGGGTCGCCTGCACCACCGTGTCGCCCATTTTCAGCGGCGCGCCCGCTTTGCAGAAGATatcgt > 1:2229660/1‑145 (MQ=255) aTCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCGCCCTCTTTCCAGAAGATAGCttt > 2:1145775/1‑149 (MQ=255) ctcCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCGCCCTCTTTCCAGAAGATAGCTTTAc < 1:292594/149‑1 (MQ=255) | GGATTTGTACGATATGGATCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCGCCCTCTTTCCAGAAGATAGCTTTAC > CP009273/3579274‑3579570 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |