Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,627,494 T→C 5.2% pseudogene (325/1194 nt) yhiL ← pseudogene, DUF4049 family protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,627,4940TC 5.2% 1027.8 / 31.3 290pseudogene (325/1194 nt)yhiLpseudogene, DUF4049 family protein
Reads supporting (aligned to +/- strand):  ref base T (137/138);  new base C (7/8);  total (144/146)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 294 total aligned reads displayed.

CTCGCTATGATAGAAAGCCCATCAACTTTATAAATTATATCTGATTTATCTCCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATTATAAAACCATACTTTCTCCATCTGGTGACTACGATCATTTACCTTCCAGTGACCATGTTGCAGGAAATAGATGATA  >  CP009273/3627346‑3627642
                                                                                                                                                    |                                                                                                                                                    
 tcGCTATGATAGAAAGCCCATCAACTTTATAAATTATATCTGATTTATCTCCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTa                                                                                                                                                     >  2:2906787/1‑149 (MQ=255)
     tATGATAGAAAGCCCATCAACTTTATAAATTATATCTGATTTATCTCCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGa                                                                                                                                                 >  1:4379045/1‑149 (MQ=255)
     tATGATAGAAAGCCCATCAACTTTATAAATTATATCTGATTTATCTCCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGa                                                                                                                                                 >  2:2220283/1‑149 (MQ=255)
      aTGATAGAAAGCCCATCAACTTTATAAATTATATCTGATTTATCTCCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGAt                                                                                                                                                <  2:1575555/149‑1 (MQ=255)
      aTGATAGAAAGCCCATCAACTTTATAAATTATATCTGATTTATCTCCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGAt                                                                                                                                                >  2:793677/1‑149 (MQ=255)
          tAGAAAGCCCATCAACTTTATAAATTATATCTGATTTATCTCCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAAc                                                                                                                                            <  1:961611/149‑1 (MQ=255)
          tAGAAAGCCCATCAACTTTATAAATTATATCTGATTTATCTCCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAAc                                                                                                                                            >  1:1400520/1‑149 (MQ=255)
           aGAAAGCCCATCAACTTTATAAATTATATCTGATTTATCTCCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACg                                                                                                                                           <  1:550082/149‑1 (MQ=255)
            gAAAGCCCATCAACTTTATAAATTATATCTGATTTATCTCCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGt                                                                                                                                          >  2:4572074/1‑149 (MQ=255)
             aaaGCCCATCAACTTTATAAATTATATCTGATTTATCTCCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTa                                                                                                                                         >  1:130268/1‑149 (MQ=255)
              aaGCCCATCAACTTTATAAATTATATCTGATTTATCTCCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTAt                                                                                                                                        >  2:1605275/1‑149 (MQ=255)
              aaGCCCATCAACTTTATAAATTATATCTGATTTATCTCCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTAt                                                                                                                                        >  1:676870/1‑149 (MQ=255)
                gCCCATCAACTTTATAAATTATATCTGATTTATCTCCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCa                                                                                                                                      >  1:2756691/1‑149 (MQ=255)
                gCCCATCAACTTTATAAATTATATCTGATTTATCTCCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCa                                                                                                                                      >  2:2547241/1‑149 (MQ=255)
                  ccATCAACTTTATAAATTATATCTGATTTATCTCCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCagt                                                                                                                                    >  1:3395842/1‑149 (MQ=255)
                   cATCAACTTTATAAATTATATCTGATTTATCTCCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCagta                                                                                                                                   >  1:4054184/1‑149 (MQ=255)
                    aTCAACTTTATAAATTATATCTGATTTATCTCCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCagtag                                                                                                                                  >  1:739406/1‑149 (MQ=255)
                       aaCTTTATAAATTATATCTGATTTATCTCCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTAt                                                                                                                               >  2:4769630/1‑149 (MQ=255)
                        aCTTTATAAATTATATCTGATTTATCTCCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCag                                                                                                                                     >  1:684660/1‑142 (MQ=255)
                          tttATAAATTATATCTGATTTATCTCCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGt                                                                                                                            <  2:2100299/149‑1 (MQ=255)
                          tttATAAATTATATCTGATTTATCTCCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGt                                                                                                                            <  2:857174/149‑1 (MQ=255)
                          tttATAAATTATATCTGATTTATCTCCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGCAAAGATAAACGTATCAGTAGTATTGt                                                                                                                            <  1:3260961/149‑1 (MQ=255)
                           ttATAAATTATATCTGATTTATCTCCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTc                                                                                                                           <  1:3137081/149‑1 (MQ=255)
                           ttATAAATTATATCTGATTTATCTCCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTc                                                                                                                           <  2:4659985/149‑1 (MQ=255)
                            tataAATTATATCTGATTTATCTCCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCg                                                                                                                          <  2:2396516/149‑1 (MQ=255)
                               aaaTTATATCTGATTTATCTCCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCg                                                                                                                       >  2:214658/1‑149 (MQ=255)
                               aaaTTATATCTGATTTATCTCCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCg                                                                                                                       <  2:3699007/149‑1 (MQ=255)
                                    atatCTGATTTATCTCCAGAGGACTTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCt                                                                                                                  >  2:3504912/1‑149 (MQ=255)
                                    atatCTGATTTATCTCCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCt                                                                                                                  <  2:721267/149‑1 (MQ=255)
                                     tatCTGATTTATCTCCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCta                                                                                                                 <  2:3111202/149‑1 (MQ=255)
                                      atCTGATTTATCTCCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCtat                                                                                                                <  1:1216861/149‑1 (MQ=255)
                                       tCTGATTTATCTCCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCtatt                                                                                                               >  1:3344405/1‑149 (MQ=255)
                                       tCTGATTTATCTCCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCtatt                                                                                                               >  1:5133980/1‑149 (MQ=255)
                                         tGATTTATCTCCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGCAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCtattat                                                                                                             >  1:7962/1‑149 (MQ=255)
                                         tGATTTATCTCCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGCAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCtattat                                                                                                             >  1:8615/1‑149 (MQ=255)
                                          gATTTATCTCCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATtata                                                                                                            <  2:1922310/149‑1 (MQ=255)
                                             ttATCTCCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTc                                                                                                         <  2:3166250/149‑1 (MQ=255)
                                             ttATCTCCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTc                                                                                                         <  2:677960/149‑1 (MQ=255)
                                                 ctcCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGa                                                                                                     >  1:2435395/1‑149 (MQ=255)
                                                     agagGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAatat                                                                                                 >  1:4274581/1‑149 (MQ=255)
                                                      tagGAATTAATAAAATTATCACCGCCCTTACACTCAACAGTAACGTTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTTTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATc                                                                                                <  1:1819140/148‑1 (MQ=255)
                                                      gagGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATc                                                                                                <  1:4595347/149‑1 (MQ=255)
                                                      gagGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATc                                                                                                <  1:3863190/149‑1 (MQ=255)
                                                      gagGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATc                                                                                                <  2:2025850/149‑1 (MQ=255)
                                                       agGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCt                                                                                               >  2:2839441/1‑149 (MQ=255)
                                                         gAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCtat                                                                                             <  2:2335916/149‑1 (MQ=255)
                                                           aTTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAg                                                                                           <  2:767259/149‑1 (MQ=255)
                                                               ataaaataaTAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACAAATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAgg                                                                                       >  2:2492886/1‑149 (MQ=255)
                                                                 aaaataaTAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGtt                                                                                     <  2:3627337/149‑1 (MQ=255)
                                                                  aaataaTAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTc                                                                                    >  1:4889767/1‑149 (MQ=255)
                                                                    ataataACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCAc                                                                                  >  2:1330081/1‑149 (MQ=255)
                                                                     taataaCCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACt                                                                                 >  2:2941286/1‑149 (MQ=255)
                                                                     taataaCCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACt                                                                                 <  1:2628836/149‑1 (MQ=255)
                                                                      aataaCCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACta                                                                                >  1:2395745/1‑149 (MQ=255)
                                                                      aataaCCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACta                                                                                <  1:2591320/149‑1 (MQ=255)
                                                                      aataaCCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACta                                                                                >  2:1868304/1‑149 (MQ=255)
                                                                       ataaCCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACtat                                                                               >  1:3416730/1‑149 (MQ=255)
                                                                       ataaCCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACtat                                                                               <  2:2792407/149‑1 (MQ=255)
                                                                          aCCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACtattat                                                                            >  1:4664837/1‑149 (MQ=255)
                                                                          aCCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACtattat                                                                            >  2:4336974/1‑149 (MQ=255)
                                                                           ccGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATtata                                                                           <  1:2873013/149‑1 (MQ=255)
                                                                           ccGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGCAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATtata                                                                           >  2:4961078/1‑149 (MQ=255)
                                                                              cccTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATTATaaaa                                                                        <  1:2160893/149‑1 (MQ=255)
                                                                                cTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATTATAAAAcc                                                                      >  2:54250/1‑149 (MQ=255)
                                                                                 ttACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATTATAAAACCa                                                                     <  1:2093281/149‑1 (MQ=255)
                                                                                   acacTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATTATAAAACCATa                                                                   <  1:1045815/149‑1 (MQ=255)
                                                                                     acTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATTATAAAACCATACt                                                                 <  2:4117749/149‑1 (MQ=255)
                                                                                     acTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATTATAAAACCATACt                                                                 >  2:171483/1‑149 (MQ=255)
                                                                                     acTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATTATAAAACCATACt                                                                 >  1:4949313/1‑149 (MQ=255)
                                                                                     acTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATTATAAAACCATACt                                                                 >  1:928004/1‑149 (MQ=255)
                                                                                          aCAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATTATAAAACCATACTTtctc                                                            >  2:2481438/1‑149 (MQ=255)
                                                                                          aCAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATTATAAAACCATACTTtctc                                                            <  2:1492229/149‑1 (MQ=255)
                                                                                          aCAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATTATAAAACCATACTTtctc                                                            <  2:3979259/149‑1 (MQ=255)
                                                                                           cAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATTATAAAACCATACTTTCTcc                                                           <  2:5129641/149‑1 (MQ=255)
                                                                                           cAGTAACGGTAATGGGAGAAGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATTATAAAACCATACTTTCTcc                                                           <  2:4582158/149‑1 (MQ=255)
                                                                                            aGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATTATAAAACCATACTTTCTCCa                                                          <  2:4292881/149‑1 (MQ=255)
                                                                                               aaCGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATTATAAAACCATACTTTCTCCATCt                                                       >  2:4342315/1‑149 (MQ=255)
                                                                                                aCGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATTATAAAACCATACTTTCTCCATCTg                                                      >  1:1214158/1‑149 (MQ=255)
                                                                                                aCGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATTATAAAACCATACTTTCTCCATCTg                                                      <  1:1555521/149‑1 (MQ=255)
                                                                                                       tGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATTATAAAACCATACTTTCTCCATCTGGTGACTa                                               <  2:356280/149‑1 (MQ=255)
                                                                                                         ggAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATTATAAAACCATACTTTCTCCATCTGGTGACTACg                                             >  1:4537256/1‑149 (MQ=255)
                                                                                                            gaCGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATTATAAAACCATACTTTCTCCATCTGGTGACTACGATc                                          <  2:1417859/149‑1 (MQ=255)
                                                                                                             aCGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATTATAAAACCATACTTTCTCCATCTGGTGACTACGATCa                                         <  1:2788817/149‑1 (MQ=255)
                                                                                                                aTAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATTATAAAACCATACTTTCTCCATCTGGTGACTACGATCAttt                                      >  2:3865661/1‑149 (MQ=255)
                                                                                                                 tAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATTATAAAACCATACTTTCTCCATCTGGTGACTACGATCATTTa                                     >  2:5016347/1‑149 (MQ=255)
                                                                                                                 tAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATTATAAAAACATACTTTCTCCATCTGGTGACTACGATCATTTa                                     >  2:3942145/1‑149 (MQ=255)
                                                                                                                   aTTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATTATAAAACCATACTTTCTCCATCTGGTGACTACGATCATTTAcc                                   <  1:4991743/149‑1 (MQ=255)
                                                                                                                   aTTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATTATAAAACCATACTTTCTCCATCTGGTGACTACGATCATTTAcc                                   <  2:3019355/149‑1 (MQ=255)
                                                                                                                      ttAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATTATAAAACCATACTTTCTCCATCTGGTGACTACGATCATTTACCTTc                                <  1:373251/149‑1 (MQ=255)
                                                                                                                       tAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATTATAAAACCATACTTTCTCCATCTGGTGACTACGATCATTTACCTTcc                               <  2:4473714/149‑1 (MQ=255)
                                                                                                                              tGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATTATAAAACCATACTTTCTCCATCTGGTGACTACGATCATTTACCTTCCAGTGAcc                        >  2:4236510/1‑149 (MQ=255)
                                                                                                                                gTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATTATAAAACCATACTTTCTCCATCTGGTGACTACGATCATTTACCTTCCAGTGACCAt                      >  1:1849519/1‑149 (MQ=255)
                                                                                                                                  tATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATTATAAAACCATACTTTCTCCATCTGGTGACTACGATCATTTACCTTCCAGTGACCATGt                    <  2:676870/149‑1 (MQ=255)
                                                                                                                                             ataATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATTATAAAACCATACTTTCTCCATCTGGTGACTACGATCATTTACCTTCCAGTGACCATGTTGCAGGAAATa         <  2:5193636/149‑1 (MQ=255)
                                                                                                                                             ataATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATTATAAAACCATACTTTCTCCATCTGGTGACTACGATCATTTACCTTCCAGTGACCATGTTGCAGGAAATa         <  1:2390130/149‑1 (MQ=255)
                                                                                                                                              taATTGTAAAGATAAACGAATCAGTAGTATTCTCGGCGAATCAAATATATTCTACAATATCTAAAGAAGGTTCACTATTATAAAACCATACTTTCTCAATCTGGTCACTACGATCATTTACCTTCCAGTGACCATGATGCAGGaaaaat        >  1:3613270/1‑146 (MQ=255)
                                                                                                                                               aaTTGCAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATTATAAAACCATACTTTCTCCATCTGGTGACTACGATCATTTACCTTCCAGTGACCATGTTGCAGGAAATAga       >  2:5107134/1‑149 (MQ=255)
                                                                                                                                                 ttGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATTATAAAACCATACTTTCTCCATCTGGTGACTACGATCATTTACCTTCCAGTGACCATGTTGCAGGAAATAgatg     >  1:1681433/1‑149 (MQ=255)
                                                                                                                                                  tGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATTATAAAACCATACTTTCTCCATCTGGTGACTACGATCATTGACCGTCCAGTGACCATGTTGCAGGAAATAgatga    <  2:3345214/149‑1 (MQ=255)
                                                                                                                                                   gTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATTATAAAACCATACTTTCTCCATCTGGTGACTACGATCATTTACCTTCCAGTGACCATGTTGCAGGAAATAgatgat   <  2:2658880/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
CTCGCTATGATAGAAAGCCCATCAACTTTATAAATTATATCTGATTTATCTCCAGAGGAATTAATAAAATAATAACCGCCCTTACACTCAACAGTAACGGTAATGGGAGACGATAATTTTAACACATGGTTATTGTCTGGTATAATTGTAAAGATAAACGTATCAGTAGTATTGTCGGCGAATCTATTATATTCTTGAATATCTATAGAAGGTTCACTATTATAAAACCATACTTTCTCCATCTGGTGACTACGATCATTTACCTTCCAGTGACCATGTTGCAGGAAATAGATGATA  >  CP009273/3627346‑3627642

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: