| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,657,073 | C→A | 6.3% | intergenic (+186/+177) | mdtF → / ← gadW | anaerobic multidrug efflux transporter, ArcA‑regulated/transcriptional activator of gadA and gadBC; repressor of gadX |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,657,073 | 0 | C | A | 6.3% | 1252.5 / 42.7 | 325 | intergenic (+186/+177) | mdtF/gadW | anaerobic multidrug efflux transporter, ArcA‑regulated/transcriptional activator of gadA and gadBC; repressor of gadX |
| Reads supporting (aligned to +/- strand): ref base C (151/153); new base A (12/9); total (163/162) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.53e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 328 total aligned reads displayed.
CCTTACTCTTTCCTGCTAACCATTCACCACTCAACAACCAGCTAACCGTCAGGAATACCAGGCTTAGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAACTAGCCGGTAGCCCGGCAGAAATCATCAGGGAAGAGTTTCACATGAAGCAGGTGTGAGA > CP009273/3656925‑3657220 | ccTTACTCTTTCCTGCTAACCATTCACCACTCAACAACCAGCTAACCGTCAGGAATACCAGGCTTAGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATc < 2:624873/149‑1 (MQ=255) ttACTCTTTCCTGCTAACCTTTCACCACTCAACAACCAGCTAACCGTCAGGAATACCAGGATTAGTACACAGCACTGAAATTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGt < 1:1549075/149‑1 (MQ=255) ttACTCTTTCCTGCTAACCATTCACCACTCAACAACCAGCTAACCGTCAGGAATACCAGGCTTAGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGt > 1:1575929/1‑149 (MQ=255) tACTCTTTCCTGCTAACCATTCACCACTCAACAACCAGCTAACCGTCAGGAATACCAGGCTTAGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATAGTa < 2:4500249/149‑1 (MQ=255) aCTCTTTCCTGCTAACCATTCACCACTCAACAACCAGCTAACCGTCAGGAATACCAGGCTTAGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTAt > 1:1251329/1‑149 (MQ=255) ctctTTCCTGCTAACCATTCACCACTCAACAACCAGCTAACCGTCAGGAATACCAGGCTTAGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATg > 2:1674193/1‑149 (MQ=255) tctTTCCTGCTAACCTTTCACCACTCAACAACCTGCTAACCGTCAGGATTACCAGGCTTTGTACACAGCACTTAAATTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGa < 1:1096268/149‑1 (MQ=255) tttCCTTCTAACCATTCACCACTCAACAACCAGCTACCCGTCAGGAATACCAGCCTTAGTACACTGCTCTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGATCAACACAATACTGACCCACATTCCCGTAATCGTATGAAt < 2:4843344/149‑1 (MQ=255) tttCCTGCTAACCATTCACCACTCAACAACCAGCTAACCGTCAGGAATACCAGGCTTAGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAAt < 1:426599/149‑1 (MQ=255) ttCCTGCTAACCATTCACCACTCAACAACCAGCTAACCGTCAGGAATACCTGGATTAGTACACAGCACTTAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAAtt < 1:4225714/149‑1 (MQ=255) ttCCTGCTAACCATTCACCACTCAACAACCAGCTAACCGTCAGGAATACCAGGCTTAGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAAtt < 2:5163102/149‑1 (MQ=255) tGCTAACCATTCACCACTCAACAACCAGCTAACCGTCAGGAATACCAGGCTTAGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCa > 2:4221488/1‑149 (MQ=255) gCTAACCATTCACCACTCAACAACCAGCTAACCGTCAGGAATACCAGGCTTAGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAg > 1:4411674/1‑149 (MQ=255) gCTAACCATTCACCACTCAACAACCAGCTAACCGTCAGGAATACCAGGCTTAGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAg > 1:952291/1‑149 (MQ=255) gCTAACCATTCACCACTCAACAACCAGCTAACCGTCAGGAATACCAGGCTTAGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAg > 1:1816802/1‑149 (MQ=255) cTAACCATTCACCACTCAACAACCCGCTAACCGTCAGGAATACCCGGCTTTGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGc < 1:3128548/149‑1 (MQ=255) aaCCATTCACCACTCAACAACCAGCTAACCGTCAGGAATACCAGGCTTAGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGGAATAGTATGAATTGTCAGCtt > 1:4060155/1‑149 (MQ=255) aaCCATTCACCACTCAACAACCAGCTAACCGTCAGGAATACCAGGCTTAGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACAGTCCCGTAATCGTATGAATTGTCAGCtt < 2:5171727/149‑1 (MQ=255) aCCATTCACCACTCAACAACCAGCTAACCGTCAGGAATACCAGGCTTAGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTta > 2:237870/1‑149 (MQ=255) aCCATTCACCACTCAACAACCAGCTAACCGTCAGGAATACCAGGCTTAGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTta > 1:1474662/1‑149 (MQ=255) aTTCACCACTCAACAACCAGCTAACCGACAGGAATACCTGGCTTAGTACACAGCACTGAATGTATAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTtaata < 1:2272604/149‑1 (MQ=255) ttCACCACTCAACAACCAGCTAACCGTCAGGAATACCAGGCTTAGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTtaataa < 1:4630198/149‑1 (MQ=255) ttCACCACTCAACAACCAGCTAACCGTCAGGAATACCAGGCTTAGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTtaataa > 1:283565/1‑149 (MQ=255) tCACCACTCAACAACCAGCTAACCGTCAGGAATACCAGGCTTAGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTaataat < 2:1129869/149‑1 (MQ=255) tCACCACTCAACAACCAGCTAACCGTCAGGAATACCAGGCTTAGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTaataat > 1:3865293/1‑149 (MQ=255) tCACCACTCAACAACCAGCTAACCGTCAGGAATACCAGGCTTAGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTaataat < 2:2125323/149‑1 (MQ=255) ccacTCAACAACCAGCTAACCGTCAGGAATACCAGGCTTAGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATccc > 2:816271/1‑149 (MQ=255) tCAACAACCAGCTAACCGTCAGGAATACCAGGCTTAGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAAc > 1:2352006/1‑149 (MQ=255) aacaacCAGCTAACCGTCAGTAATACCAGGCTTAGTACACAGCATTTAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTCAATAATCCCAAACAt < 1:282544/149‑1 (MQ=255) aacaacCAGCTAACCGTCAGGAATACCAGGCTTAGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACAt > 1:3516071/1‑149 (MQ=255) aacaacCAGCTAACCGTCAGGAATACCAGGATTTGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACAt < 1:2015125/149‑1 (MQ=255) caacCAGCTAACCGTCAGGAATACCAGGATTAGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGc < 2:3126644/149‑1 (MQ=255) aacCAGCTAACCGTCAGGAATACCAGGCTTAGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGcc > 2:3049472/1‑149 (MQ=255) ccAGCTAACCGTCAGGAATACCAGGCTTAGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGa > 1:2972329/1‑149 (MQ=255) aaCCGTCAGGAATACCAGGCTTAGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATAGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCttt > 1:55281/1‑149 (MQ=255) cGTCAGTAATACCAGGCTTAGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTtcc < 1:101442/149‑1 (MQ=255) gTCAGGAATACCAGGCTTAGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTtcct > 2:132502/1‑149 (MQ=255) gTCAGGAATACCAGGCTTAGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTtcct > 1:235816/1‑149 (MQ=255) ggAATACCAGGCTTAGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTg > 2:2627029/1‑149 (MQ=255) ggAATACCAGGCTTAGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTg < 1:4556665/149‑1 (MQ=255) gAATACCAGGCTTAGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGa > 1:2610300/1‑149 (MQ=255) aTACCAGGCTTAGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGaaa > 2:1919232/1‑149 (MQ=255) ccAGGCTTAGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATAGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAata > 2:1575551/1‑149 (MQ=255) gCTTATTACACAGCACTTAAATTACAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAataccga < 1:1356674/149‑1 (MQ=255) cTTAGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAataccgat > 2:3644832/1‑149 (MQ=255) tAGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAataccgatac < 1:4012358/149‑1 (MQ=255) acacAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGACTTTTCCTCCTGAAAATACCGATACCGcc > 1:3966320/1‑149 (MQ=255) aGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGc > 2:5075866/1‑149 (MQ=255) aaaGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGc > 2:1363001/1‑149 (MQ=255) aaaGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATAGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGc > 2:1093111/1‑149 (MQ=255) aaGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCg > 1:3586739/1‑149 (MQ=255) aaGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCg > 1:2490260/1‑149 (MQ=255) aaGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCg > 1:1996005/1‑149 (MQ=255) gTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGaa > 2:2540260/1‑149 (MQ=255) gTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGaa > 2:3985511/1‑149 (MQ=255) aGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAag < 2:4630547/149‑1 (MQ=255) gAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAaga > 1:2107881/1‑149 (MQ=255) aaaCCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAagag > 1:4700052/1‑149 (MQ=255) aCCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGaa < 2:2997689/149‑1 (MQ=255) ccACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAAc > 2:3787882/1‑149 (MQ=255) ccACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAAc < 2:4892273/149‑1 (MQ=255) ccACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAAc < 1:159517/149‑1 (MQ=255) ccACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAAc < 2:250015/149‑1 (MQ=255) ccACTCCAGCCATTAGTCAACAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAAc < 2:3693460/149‑1 (MQ=255) cACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAACt > 1:768705/1‑149 (MQ=255) aCTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAACTa < 2:2778688/149‑1 (MQ=255) aCTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAACTa < 2:1442471/149‑1 (MQ=255) cAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAACTAGCCg > 2:3234975/1‑149 (MQ=255) ccATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAACTAGCCGGTa < 2:2389434/149‑1 (MQ=255) aTTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATAGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAACTAGCCGGTAGc > 2:1348262/1‑149 (MQ=255) ttCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAACTAGCCGGTAGcc > 1:1755201/1‑149 (MQ=255) tCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAACTAGCCGGTAGccc < 2:2659625/149‑1 (MQ=255) tcatcaATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAACTAGCCGGTAGCCCGGc > 1:4207071/1‑149 (MQ=255) aaTTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAACTAGCCGGTAGCCCGGCAGaaa < 2:1251329/149‑1 (MQ=255) tttGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAACTAGCCGGTAGCCCGGCAGAAatc > 2:3350119/1‑149 (MQ=255) tttGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAACTAGCCGGTAGCCCGGCAGAAatc < 2:3516071/149‑1 (MQ=255) tttGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAACTAGCCGGTAGCCCGGCAGAAatc > 2:750446/1‑149 (MQ=255) ttGAACAACACAATACTGACCCACATTCCCGTAATAGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAACTAGCCGGTAGCCCGGCAGAAatca < 1:2780934/149‑1 (MQ=255) tGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAACTAGCCGGTAGCCCGGCAGAAatcat < 2:3958728/149‑1 (MQ=255) gAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAACTAGCCGGTAGCCCGGCAGAAatcatc > 2:5003770/1‑149 (MQ=255) aacaacACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAACTAGCCGGTAGCCCGGCAGAAAtcatca > 1:4879338/1‑149 (MQ=255) aacaCAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAACTAGCCGGTAGCCCGGCAGAAATCATCAggg < 1:4129129/149‑1 (MQ=255) aacaCAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAACTAGCCGGTAGCCCGGCAGAAATCATCAggg < 1:593036/149‑1 (MQ=255) cacaATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAACTAGCCGGTAGCCCGGCAGAAATCATCAGGGaa < 1:582175/149‑1 (MQ=255) caATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAACTAGCCGGTAGCCCGGCAGAAATCATCAGGGAaga < 1:2327591/149‑1 (MQ=255) aaTACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAACTAGCCGGTAGCCCGGCAGAAATCATCAGGGAagag < 2:4369667/149‑1 (MQ=255) aaTACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAACTAGCCGGTAGCCCGGCAGAAATCATCAGGGAagag > 2:2467407/1‑149 (MQ=255) aaTACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAACTAGCCGGTAGCCCGACAGAAATCATCAGGGAagag < 1:1881660/149‑1 (MQ=255) tACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAACTAGCCGGTAGCCCGGCAGAAATCATCAGGGAAGAGtt > 1:2434849/1‑149 (MQ=255) aCTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAACTAGCCGGTAGCCCGGCAGAAATCATCAGGGAAGAGttt < 2:879984/149‑1 (MQ=255) cTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAACTAGCCGGTAGCCCGGCAGAAATCATCAGGGACGAGTTTc > 2:5119882/1‑149 (MQ=255) tGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAACTAGCCGGTAGCCCGGCAGAAATCATCAGGGAAGAGTTTca < 2:3302008/149‑1 (MQ=255) tGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAACTAGCCGGTAGCCCGGCAGAAATCATCAGGGAAGAGTTTca < 2:3672263/149‑1 (MQ=255) gACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAACTAGCCGGTAGCCCGGCAGAAATCATCAGGGAAGAGTTTcac < 2:1481825/149‑1 (MQ=255) gACCCACATTCCCGTAATCGTAGGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAACTAGCCGGTAGCCCGGCAGAAATCATCAGGGAAGAGTTTcac > 1:4972020/1‑149 (MQ=255) acaTTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTCTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAACTAGCCGGTAGCCCGGCAGAAATCATCAGGGAAGAGTTTCACATGaa > 2:1773837/1‑149 (MQ=255) aTTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAACTAGCCGGTAGCCCGGCAGAAATCATCAGGGAAGAGTTTCACATGAAGc > 2:2296583/1‑149 (MQ=255) gtCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAACTAGCCGGTAGCCCGGCAGAAATCATCAGGGAAGAGTTTCACATGAAGCa < 2:4364233/148‑1 (MQ=255) tCCCGTAATAGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAACTAGCCGGTAGCCCGGCAGAAATCATCAGGGAAGAGTTTCACATGAAGCAg < 2:4449202/149‑1 (MQ=255) ccGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAACTAGCCGGTAGCCCGGCAGAAATCATCAGGGAAGAGTTTCACATGAAGCAGgt > 1:2081260/1‑149 (MQ=255) | CCTTACTCTTTCCTGCTAACCATTCACCACTCAACAACCAGCTAACCGTCAGGAATACCAGGCTTAGTACACAGCACTGAAAGTAGAAACCACTCCAGCCATTCGTCATCAATTTGAACAACACAATACTGACCCACATTCCCGTAATCGTATGAATTGTCAGCTTAATAATCCCAAACATGCCGAGTCTTTTCCTCCTGAAAATACCGATACCGCCTGGCAAACTGCGAAAGAGAACTAGCCGGTAGCCCGGCAGAAATCATCAGGGAAGAGTTTCACATGAAGCAGGTGTGAGA > CP009273/3656925‑3657220 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |