| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,671,771 | T→A | 12.5% | intergenic (‑61/+9) | yhjG ← / ← yhjH | putative inner membrane‑anchored periplasmic AsmA family protein/cyclic‑di‑GMP phosphodiesterase, FlhDC‑regulated |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,671,771 | 0 | T | A | 12.5% | 1174.6 / 130.3 | 353 | intergenic (‑61/+9) | yhjG/yhjH | putative inner membrane‑anchored periplasmic AsmA family protein/cyclic‑di‑GMP phosphodiesterase, FlhDC‑regulated |
| Reads supporting (aligned to +/- strand): ref base T (187/122); new base A (26/18); total (213/140) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.70e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.87e-01 | |||||||||||
Only 100 of 355 total aligned reads displayed.
AAAAGTTGCAATCAAAATGATCGCCACGACAATCAACAACAAGAAAGCCCCTGAAATCGCAGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTCTGAACATCACGCCACTCTTCCGGCGTTTCTACGCCCTCGACAATCACCCCG > CP009273/3671624‑3671918 | aaaaGTTGCAATCAAAATGATCGCCACGACAATCAACAGCAAGAAAGCCCCTGAAATCGCAGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATg < 2:1890592/149‑1 (MQ=255) aaaGTTGCAATCAAAATGATCGCCACGACAATCAACAACAAGAAAGCCCCTGAAATCGCAGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGa < 2:5193262/149‑1 (MQ=255) aaaGTTGCAATCAAAATGATCGCCACGACAATCAACAACAAGAAAGCCCCTGAAATCGCAGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAAAGa > 2:1628203/1‑149 (MQ=255) aaGTTGCAATCAAAATGATCGCCACGACAATCAACAACAAGAAAGCCCCTGAAATCGCAGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAg > 2:2346547/1‑149 (MQ=255) aaGTTGCAATCAAAATGATCGCCACGACAATCAACAACAAGAAAGCCCCTGAAATCGCAGCGGTTATTTTGCCTGCCTTGCTCAGCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAg > 2:4703323/1‑149 (MQ=255) aGTTGCAATCAAAATGATCGCCACGACAATCAACAACAAGAAAGCCCCTGAAATCGCAGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAgg < 1:2688230/149‑1 (MQ=255) ttGCAATCAAAATGATCGCCACGACAATCAACAACAAGAAAGCCCCTGAAATCGCAGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCa < 2:4722911/149‑1 (MQ=255) tGCAATCAAAATGATCGCCACGACAATCAACAACAAGAAAGCCCCTGAAATCGCAGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAAAGAGGCAg < 2:1854321/149‑1 (MQ=255) gCAATCAAAATGATCGCCACGACAATCAACAACAAGAAAGCCCCTGAAATCGCAGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGc < 1:1389736/149‑1 (MQ=255) gCAATCAAAATGATCGCCACGACAATCAACAACAAGAAAGCCCCTGAAATCGCAGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGc < 2:1503541/149‑1 (MQ=255) cAATCAAACTGATCGCCACGACAATCAACAACAAGAAAGCCCCTGAAATCGCAGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCt < 2:1070707/149‑1 (MQ=255) cAAAATGATCGCCACGACAATCAACAACAAGAAAGCCCCTGAAATCGCAGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTtata < 2:1795279/149‑1 (MQ=255) cAAAATGATCGCCACGACAATCAACAACAAGAAAGCCCCTGAAATCGCAGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAAAGAGGCAGCTtata > 1:2715498/1‑149 (MQ=255) aaaaTGATCGCCACGACAATCAACAACAAGAAAGCCCCTGAAATCGCAGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGACAATGAGGCAGCTTATAg > 1:800436/1‑149 (MQ=255) aaaTGATCGCCACGACAATCAACAACAAGAAAGCCCCTTAAATCGCAGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAgc < 1:352307/149‑1 (MQ=255) aaTGATCGCCACGACAATCAACAACAAGAAAGCCCCTGAAATCGCAGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAgcg > 1:606411/1‑149 (MQ=255) gATCGCCACGACAATCAACAACAAGAAAGCCCCTGAAATCGCAGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAAAGAGGCAGCTTATAGCGCCa > 1:1040098/1‑149 (MQ=255) cACGACAATCAACAACAAGAAAGCCCCTGAAATCGCAGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAAAGAGGCAGCTTATAGCGCCAGAAccg > 2:3982959/1‑149 (MQ=255) aCGACAATCAACAACAAGAAAGCCCCTGAAATCGCAGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAAccgc < 2:1439642/149‑1 (MQ=255) aCAATCAACAACAAGAAAGCCCCTGAAATCGCAGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGt > 1:1934353/1‑149 (MQ=255) aCAATCAACAACAAGAAAGCCCCTGAAATCGCAGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGt > 2:2459799/1‑149 (MQ=255) cAATCAACAACAAGAAAGCCCCTGAAATCGCAGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTa < 1:4569701/149‑1 (MQ=255) cAATCAACAACAAGAAAGCCCCTGAAATCGCAGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTa > 2:3883336/1‑149 (MQ=255) cAATCAACAACAAGAAAGCCCCTGAAATCGCAGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTa > 2:1994964/1‑149 (MQ=255) aaTCAACAACAAGAAAGCCCCTGAAATCGCAGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTAt < 2:4627916/149‑1 (MQ=255) aaTCAACAACAAGAAAGCCCCTGAAATCGCAGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTAt > 1:3472707/1‑149 (MQ=255) aTCAACAACAAGAAAGCCCCTGAAATCGCAGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCAAAAGATAGTCCAGCAAGGCGGAAAAAGAGGCAGCTTATATCGCCAGAAACGCCGTAtt > 1:4361415/1‑149 (MQ=255) acaacaaGAAAGCCCCTGAAATCGCAGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAAAGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGc > 1:164602/1‑149 (MQ=255) acaacaaGAAAGCCCCTGAAATCGCAGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAAAGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGc < 1:327262/149‑1 (MQ=255) acaaGAAAGCCCCTGAAATCGCAGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGtt > 1:3537220/1‑149 (MQ=255) caaGAAAGTCCCTGAAATCGCAGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGttt < 1:4702091/149‑1 (MQ=255) aaGAAAGCCCCTGAAATCGCAGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTc < 1:3065564/149‑1 (MQ=255) aaaGCCCCTGAAATCGCAGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTAt < 1:3918283/149‑1 (MQ=255) gAAATCGCAGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCgg > 2:3592651/1‑149 (MQ=255) aaaTCGCAGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCggg > 2:1352981/1‑149 (MQ=255) aaTCGCAGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGc < 2:413758/149‑1 (MQ=255) tCGCAGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGt > 1:4549320/1‑149 (MQ=255) tCGCAGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGt < 1:1408421/149‑1 (MQ=255) aGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTgaaa < 2:1542341/149‑1 (MQ=255) gCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTgaaag < 1:4398603/149‑1 (MQ=255) gCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTgaaag > 1:2592589/1‑149 (MQ=255) ggTTATTTTGCCTGCCTTGCTCATCGGTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTgaaagaa < 2:2680613/149‑1 (MQ=255) tATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAAcc > 2:1928812/1‑149 (MQ=255) aTTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCa > 1:3696107/1‑149 (MQ=255) aTTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCa > 2:280978/1‑149 (MQ=255) gcctgcctTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCtt < 1:4953649/149‑1 (MQ=255) cctgcctTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTtg > 2:2937832/1‑149 (MQ=255) cctgcctTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTtg > 2:337558/1‑149 (MQ=255) cctTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTgcg > 1:4106392/1‑149 (MQ=255) cTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGaa < 2:3045598/149‑1 (MQ=255) cTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGaa > 1:266591/1‑149 (MQ=255) cTCATCGTTCGCTTCCTCATATTCGTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCGTGTGCGGCGaa < 2:4808261/149‑1 (MQ=255) tCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAAAGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAAt > 2:2738598/1‑149 (MQ=255) aTCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAAAGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGc > 2:3204245/1‑149 (MQ=255) tCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTACAGATAGTCCAGCCAGGCGGAAAAAGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCg < 1:2507871/149‑1 (MQ=255) tCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCg > 2:3741415/1‑149 (MQ=255) gTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCggg < 2:2130805/149‑1 (MQ=255) ttCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGc > 1:2090625/1‑149 (MQ=255) ttCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGc > 1:1233807/1‑149 (MQ=255) gCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAg > 1:5052939/1‑149 (MQ=255) cTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAAAGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGt > 1:4424472/1‑149 (MQ=255) ttCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGtt > 2:2987589/1‑149 (MQ=255) tCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTc < 1:915/149‑1 (MQ=255) tCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTc > 1:3339200/1‑149 (MQ=255) cTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTCTg > 1:3885240/1‑149 (MQ=255) tatTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTCTGAACa < 1:1999303/149‑1 (MQ=255) ttcttcCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTCTGAACATc < 1:5117934/149‑1 (MQ=255) ttcCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTCTGAACATCACg > 1:2306315/1‑149 (MQ=255) gtgCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCTGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTCTGAACATCACGCCAct > 2:3907704/1‑149 (MQ=255) gtgCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCTGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTCTGAACATCACGCCAct > 2:1310167/1‑149 (MQ=255) cAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTCTGAACATCACGCCACTCTTc > 1:2774820/1‑149 (MQ=255) cAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTCTGAACATCACGCCACTCTTc < 1:1550474/149‑1 (MQ=255) aGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTCTGAACATCACGCCACTCTTcc > 2:2105202/1‑149 (MQ=255) aGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTCTGAACATCACGCCACTCTTcc < 1:1127645/149‑1 (MQ=255) gTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTCTGAACATCACGCCACTCTTCCg < 1:2459799/149‑1 (MQ=255) tCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTCTGAACATCACGCCACTCTTCCgg < 1:4712592/149‑1 (MQ=255) cTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTCTGAACATCACGCCACTCTTCCGGCg > 2:4672498/1‑149 (MQ=255) aaaGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTCTGAACATCACGCCACTCTTCCGGCGtt < 1:99089/149‑1 (MQ=255) aaaGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTCTGAACATCACGCCACTCTTCCGGCGtt < 1:179199/149‑1 (MQ=255) aaGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTCTGAACATCACGCCACTCTTCCGGCGttt > 2:2516237/1‑149 (MQ=255) aGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTCTGAACATCACGCCACTCTTCCGGCGTTTc > 2:1842700/1‑149 (MQ=255) aGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTCTGAACATCACGCCACTCTTCCGGCGTTTc > 2:759213/1‑149 (MQ=255) aGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTCTGAACATCACGCCACTCTTCCGGCGTTTc > 1:1812547/1‑149 (MQ=255) aTAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTCTGAACATCACGCCACTCTTCCGGCGTTTCTa < 2:925012/149‑1 (MQ=255) gTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTCTGAACATCACGCCACTCTTCCGGCGTTTCTACGc > 2:379328/1‑149 (MQ=255) gTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTCTGAACATCACGCCACTCTTCCGGCGTTTCTACGc > 2:5087270/1‑149 (MQ=255) gTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTCTGAACATCACGCCACTCTTCCGGCGTTTCTACGc > 2:4890422/1‑149 (MQ=255) cagccagGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTCTGAACATCACGCCACTCTTCCGGCGTTTCTACGCCCt < 2:855224/149‑1 (MQ=255) gccagGCGGAAAAAGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTCTGAACATCACGCCACTCTTCCGGCGTTTCTACGCCCTCg < 2:2568476/149‑1 (MQ=255) ccagGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTCTGAACATCACGCCACTCTTCCGGCGTTTCTACGCCCTCGa < 1:2659061/149‑1 (MQ=255) cagGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTCTGAACATCACGCCACTCTTCCGGCGTTTCTACGCCCTCGAc > 1:1326938/1‑149 (MQ=255) agGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTCTGAACATCACGCCACTCTTCCGGCGTTTCTACGCCCTCGACa < 1:4237246/149‑1 (MQ=255) ggCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTCTGAACATCACGCCACTCTTCCGGCGTTTCTACGCCCTCGACaa > 1:4045614/1‑149 (MQ=255) ggCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTCTGAACATCACGCCACTCTTCCGGCGTTTCTACGCCCTCGACaa > 2:3518800/1‑149 (MQ=255) gCGGAAAAAGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTCTGAACATCACGCCACTCTTCCGGCGTTTCTACGCCCTCGACAAt < 2:3263412/149‑1 (MQ=255) cGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTCTGAACATCACGCCACTCTTCCGGCGTTTCTACGCCCTCGACAATc > 2:115305/1‑149 (MQ=255) ggAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTCTGAACATCACGCCACTCTTCCGGCGTTTCTACGCCCTCGACAATCa > 1:2887129/1‑149 (MQ=255) aaTGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTCTGAACATCACGCCACTCTTCCGGCGTTTCTACGCCCTCGACAATCAcccc > 1:2123167/1‑149 (MQ=255) aaTGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTCTGAACATCACGCCACTCTTCCGGCGTTTCTACGCCCTCGACAATCAcccc < 2:4280395/149‑1 (MQ=255) aTGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTCTGAACATCACGCCACTCTTCCGGCGTTTCTACGCCCTCGACAATCACCCcg > 1:4156262/1‑149 (MQ=255) | AAAAGTTGCAATCAAAATGATCGCCACGACAATCAACAACAAGAAAGCCCCTGAAATCGCAGCGGTTATTTTGCCTGCCTTGCTCATCGTTCGCTTCCTCATATTCTTCCTGTGCCAGTCCTAAAGATAGTCCAGCCAGGCGGAAAATGAGGCAGCTTATAGCGCCAGAACCGCCGTATTCAGCGTTTCTATCGGTGCCGGGCGTGAAAGAAACCAGCCTTGTGCGGCGAATGCGGGCGAGTTCTGAACATCACGCCACTCTTCCGGCGTTTCTACGCCCTCGACAATCACCCCG > CP009273/3671624‑3671918 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |