| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,813,962 | T→C | 13.5% | Q190R (CAA→CGA) | ligB ← | DNA ligase, NAD(+)‑dependent |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,813,962 | 0 | T | C | 13.5% | 1068.0 / 137.6 | 371 | Q190R (CAA→CGA) | ligB | DNA ligase, NAD(+)‑dependent |
| Reads supporting (aligned to +/- strand): ref base T (154/167); new base C (23/27); total (177/194) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.79e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 392 total aligned reads displayed.
CAGCTCTTTTAAACGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCTTTCAGGCCATTACCGCGACTGATTGCTTT > CP009273/3813814‑3814110 | aGCTCTTTTAAACGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATttgttgttg < 1:4167224/149‑1 (MQ=255) aGCTCTTTTAAACGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATttgttgttg > 1:4589776/1‑149 (MQ=255) ctctTTTAAACGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGa < 1:5186361/149‑1 (MQ=255) ctctTTTAAACGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGa < 1:4662056/149‑1 (MQ=255) ctTTTAAACGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGata < 2:4082748/149‑1 (MQ=255) ttAAACGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGc > 2:1210431/1‑149 (MQ=255) ttAAACGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGc > 1:2806727/1‑149 (MQ=255) aaaCGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGccc > 2:638170/1‑149 (MQ=255) aaCGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGcccc > 2:418580/1‑149 (MQ=255) aaCGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGcccc > 2:931535/1‑149 (MQ=255) aCGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCt > 2:1525998/1‑149 (MQ=255) aCGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCt < 2:4405471/149‑1 (MQ=255) gATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTcg > 1:4730067/1‑149 (MQ=255) cAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCgcgc < 1:3922123/149‑1 (MQ=255) cAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCgcgc < 2:5152974/149‑1 (MQ=255) cAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCgcgc < 1:454090/149‑1 (MQ=255) aGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCt < 1:2513186/149‑1 (MQ=255) aGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCt > 2:202398/1‑149 (MQ=255) aCATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTgg > 2:2563109/1‑149 (MQ=255) cATTAACTGCGGTCCATCCGGCCATGCCCAGACAAACACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGga < 1:632977/149‑1 (MQ=255) aaCTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGaaa < 1:959048/149‑1 (MQ=255) aCTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAat < 1:395080/149‑1 (MQ=255) cTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAata > 1:2147880/1‑149 (MQ=255) tGCGGTCCATCCGGCCATGCCCAGACGAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAatat > 2:4606604/1‑149 (MQ=255) gCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATAtt < 2:3219031/149‑1 (MQ=255) cGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATAttt < 2:3643305/149‑1 (MQ=255) aTCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCt < 1:2686938/149‑1 (MQ=255) aTCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCt > 2:3467319/1‑149 (MQ=255) aTCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTCGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCt < 2:2330270/149‑1 (MQ=255) tCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTCGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTg > 2:1737681/1‑149 (MQ=255) cGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGaa < 1:3813625/149‑1 (MQ=255) cGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGaa < 1:4427940/149‑1 (MQ=255) gCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGc < 2:4273886/149‑1 (MQ=255) ccATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCg > 1:1836410/1‑149 (MQ=255) ccAGGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCg < 1:1177346/149‑1 (MQ=255) cATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTCGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGt < 2:1856742/149‑1 (MQ=255) aTGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTa > 1:2625388/1‑149 (MQ=255) aTGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTCGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTa > 2:4416974/1‑149 (MQ=255) cccAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTg < 2:3593253/149‑1 (MQ=255) ccAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGt < 1:1350707/149‑1 (MQ=255) cAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGtt < 2:2397942/149‑1 (MQ=255) cAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGtt < 2:3444010/149‑1 (MQ=255) cAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGtt < 2:844567/149‑1 (MQ=255) aaaaCGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAATCCAGCAACTTTTGCGCGGGCATTTATTCACCCCATTTGTTGTTGTATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGAACAGATGGCTaa > 2:4457489/1‑149 (MQ=255) aaaCGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTCGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTaaa < 2:2990811/149‑1 (MQ=255) aCGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAgg < 1:1269392/149‑1 (MQ=255) ccAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCg > 2:1070377/1‑149 (MQ=255) cAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTTCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTACCCCTGAATCGTAATGTTGGCTAAAGGCCCGc > 1:4943143/1‑149 (MQ=255) cAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGc < 2:2137512/149‑1 (MQ=255) agagAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCt > 2:3345775/1‑149 (MQ=255) agagAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCt < 1:2755000/149‑1 (MQ=255) gagaATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTa > 2:544493/1‑149 (MQ=255) gagaATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTa > 2:1817665/1‑149 (MQ=255) gagaATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTa > 2:1930911/1‑149 (MQ=255) agaATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTaa < 2:4260590/149‑1 (MQ=255) gaATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAAc < 2:455686/149‑1 (MQ=255) aaTTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACg > 2:4238327/1‑149 (MQ=255) aaTTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACg < 2:3762580/149‑1 (MQ=255) tCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGtt < 2:4475777/149‑1 (MQ=255) tCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGtt < 1:3424841/149‑1 (MQ=255) aGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTg > 2:3510273/1‑149 (MQ=255) gtgtCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCgg < 1:3734957/149‑1 (MQ=255) cTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGc > 1:577904/1‑149 (MQ=255) cTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGc < 1:3016109/149‑1 (MQ=255) aTCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCgg > 1:790559/1‑149 (MQ=255) tCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGa < 1:2725130/149‑1 (MQ=255) tCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGa > 1:3249236/1‑149 (MQ=255) ccTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAAtt < 1:861263/149‑1 (MQ=255) gcgcATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTCGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGc < 2:2937064/149‑1 (MQ=255) atcatcAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAAc < 1:1490363/149‑1 (MQ=255) tcatcaAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACt > 1:1012515/1‑149 (MQ=255) tcatcaAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGATGGCTAAAGGCCCGCTAACGGTGTGCGGCACAGCGGAAATTAAGCTAACt > 1:4285495/1‑149 (MQ=255) tcatcaAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTCGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACt > 1:2052633/1‑149 (MQ=255) aGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGc > 1:408644/1‑149 (MQ=255) aGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGc > 1:4209321/1‑149 (MQ=255) gCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCg < 1:3292385/149‑1 (MQ=255) gCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCg > 1:1219580/1‑149 (MQ=255) gCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTCGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCg > 2:1625498/1‑149 (MQ=255) cAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTc > 2:1780503/1‑149 (MQ=255) aGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTcc > 1:1132893/1‑149 (MQ=255) gCAAATTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCACCTCGCGCTGGAGAAATATTTCACACTGAAGCTAACTGTATGATAAATGCACGCTAACGGTTTTCGGCACAGCTGAAAATAAGCTAAATTTCTGCGTCCa > 2:1225079/1‑149 (MQ=255) gcgcGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGcc < 1:2236165/149‑1 (MQ=255) gggCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCTTTc < 1:5135915/149‑1 (MQ=255) gCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCTTTCAg > 1:712695/1‑149 (MQ=255) gCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCTTTCAg < 1:3168417/149‑1 (MQ=255) cATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCTTTCAgg < 2:5014083/149‑1 (MQ=255) tttATTCCCCCCATTTGTTGTCGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCTTTCAGGcc > 2:2740311/1‑149 (MQ=255) tttAGTCCCCCCATTTGTTGTCGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTGTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCTTTCAGGcc < 2:1767067/149‑1 (MQ=255) aTTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCTTTCAGGCCAtt > 1:2303524/1‑149 (MQ=255) aTTCCCCCCATTTGTTGTCGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCTTTCAGGCCAtt > 1:2090139/1‑149 (MQ=255) ttCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCTTTCAGGCCATTa > 1:3638219/1‑149 (MQ=255) ttCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCTTTCAGGCCATTa > 1:5058945/1‑149 (MQ=255) tCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCTTTCAGGCCATTAc < 2:4893005/149‑1 (MQ=255) tCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGGTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCTTTCAGGCCATTAc < 2:179771/149‑1 (MQ=255) ccATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCTTTCAGGCCATTACCGCGa > 1:2994579/1‑149 (MQ=255) tttGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCTTTCAGGCCATTACCGCGACTg > 2:466939/1‑149 (MQ=255) ttgttgGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCTTTCAGGCCATTACCGCGACTGATTg > 1:2426675/1‑149 (MQ=255) tgttgGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCTTTCAGGCCATTACCGCGACTGATTGc < 1:931538/149‑1 (MQ=255) ttgGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCTTTCAGGCCATTACCGCGACTGATTGCtt < 1:3345775/149‑1 (MQ=255) tgGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCTTTCAGGCCATTACCGCGACTGATTGCttt < 2:5065851/149‑1 (MQ=255) | CAGCTCTTTTAAACGATCAGACATTAACTGCGGTCCATCCGGCCATGCCCAGACAAAAACGCCCAGAGAATTCAGCGTGTCGCTATCGTCCTGGCGCATCATCAAGCCAGCAACTTTTGCGCGGGCATTTATTCCCCCCATTTGTTGTTGGATATGCCCCTCGCGCTGGAGAAATATTTCCCCCTGAAGCGTACTGTTGGCTAAAGGCCCGCTAACGGTTTGCGGCACAGCGGAAATTAAGCTAACTTTCTGCGTCCAGTCCTCGCCTTTCAGGCCATTACCGCGACTGATTGCTTT > CP009273/3813814‑3814110 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |