| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,975,679 | A→C | 6.0% | intergenic (+47/‑56) | yifK → / → argX | putative APC family amino acid transporter/tRNA‑Arg |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,975,679 | 0 | A | C | 6.0% | 961.3 / 33.0 | 331 | intergenic (+47/‑56) | yifK/argX | putative APC family amino acid transporter/tRNA‑Arg |
| Reads supporting (aligned to +/- strand): ref base A (180/122); new base C (8/16); total (188/143) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.70e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 352 total aligned reads displayed.
ATGTCGCTGTTTGTTGGCATCATCTTTATGCTGGCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTT > CP009273/3975531‑3975827 | aTGTCGCTGTTTGTTGGCATCATCTTTATGCTGGCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTaaaaa > 1:188485/1‑149 (MQ=255) tGTCGCTGTTTGTTGGCATCATCTTTATGCTGGCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCAAAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAg > 1:1054192/1‑149 (MQ=255) gTCGCTGTTTGTTGGCATCATCTTTATGCTGGCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAgg < 2:224966/149‑1 (MQ=255) cGCTGTTTGTTGGCATCATCTTTATGCTGGCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGa < 2:4391993/149‑1 (MQ=255) cGCTGTTTGTTGGCATCATCTTTATGCTGGCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGa < 2:4057400/149‑1 (MQ=255) cTGTTTGTTGGCATCATCTTTATGCTGGCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACt < 1:1137984/149‑1 (MQ=255) cTGTTTGTTGGCATCATCTTTATGCTGGCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACt < 1:2390539/149‑1 (MQ=255) tgtttgttGGCATCATCTTTATGCTGGCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTa < 2:4263474/149‑1 (MQ=255) gtttgttGGCATCATCTTTATGCTGGCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAg > 1:4828383/1‑149 (MQ=255) tttgttGGCATCATCTTTATGCTGGCGGTGACGGCGATTTATAATGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGa < 2:2722845/149‑1 (MQ=255) tttgttGGCATCATCTTTATGCTGGCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGa < 2:1503991/149‑1 (MQ=255) tttgttGGCATCATCTTTATGCTGGCGGTGACGGCGATTTATAAAGTTTATGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGAAGCAAAACGCACAAACCGAAACCAAACGCGCAATTTATTTAAAAAGGGACTAGa > 2:2768307/1‑149 (MQ=255) ttgttgGCATCATCTTTATGCTGGCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGAc < 2:1649622/149‑1 (MQ=255) gttgGCATCATCTTTATGCTGGCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACag > 1:4163779/1‑149 (MQ=255) ggCATCATCTTTATGCTGGCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAgg < 1:286145/149‑1 (MQ=255) ggCATCATCTTTATGCTGGCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAgg > 2:5114446/1‑149 (MQ=255) ggCATCATCTTTATGCTGGCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAgg < 1:4011225/149‑1 (MQ=255) gCATCATCTTTATGCTGGCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAggg < 2:2585959/149‑1 (MQ=255) atcatcTTTATGCTGGCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGt < 2:1470424/149‑1 (MQ=255) atcatcTTTATGCTGGCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGt < 2:4967144/149‑1 (MQ=255) tcTTTATGCTGGCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGa > 1:5162266/1‑149 (MQ=255) tcTTTATGCTGGCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGa > 2:3460922/1‑149 (MQ=255) tATGCGGGCGGTGAGGGCTATTTTTAAAGTTTTTGGCATTAATCGCAACGGGAAAGCGCATAAACTGGAGGAATAAGCAGAAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTc < 1:3355674/149‑1 (MQ=255) tGGCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGTAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAACGGGACTAGACAGAGGGGTGGGAAGTCCGtat < 1:3956319/149‑1 (MQ=255) tGGCGGGGACGGCGATTTATACAGTTTTGGGCCGTCATCGCCACGGGAAAGCGCATAACCTGGCGGAATACGCAGCAACACGCACAAACCGTAACCAACCGCGCAATTTATTTACAAAGGGACTAGACCGAGGGGTGGGAAGTCCGtat < 2:1037651/149‑1 (MQ=255) cGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGtattat < 2:4668751/149‑1 (MQ=255) gACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCAc > 1:4484476/1‑149 (MQ=255) aCGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCAcc < 1:1390757/149‑1 (MQ=255) aCGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCAcc < 1:4047880/149‑1 (MQ=255) cGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCAccc > 1:4732284/1‑149 (MQ=255) gCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCAccccc > 1:3455544/1‑149 (MQ=255) gCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCAccccc > 1:4211301/1‑149 (MQ=255) tttATAAAGTTTTTGGCCTTAATCGCCACGGTAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCaa < 1:2560977/149‑1 (MQ=255) tttATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCaa > 2:3326864/1‑149 (MQ=255) tataAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACg > 1:3202918/1‑149 (MQ=255) ataAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACgg > 2:2014916/1‑149 (MQ=255) taAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGgc > 1:1602150/1‑149 (MQ=255) aaGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGgcgc > 2:3631004/1‑149 (MQ=255) gTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTa > 1:4403335/1‑149 (MQ=255) tttttGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTaa > 2:2293815/1‑149 (MQ=255) tatttGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTaa > 1:696535/3‑149 (MQ=255) ccTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAACGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCg > 1:588469/1‑149 (MQ=255) ttAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTa > 2:956843/1‑149 (MQ=255) aTCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCt > 2:3453897/1‑149 (MQ=255) aTCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCt > 2:3503187/1‑149 (MQ=255) aTCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATGTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGACCGTATTATCCACACCCGCAACGGCGCTAAGCGCCCGAAGCt > 1:1353992/1‑149 (MQ=255) tCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTc > 1:813723/1‑149 (MQ=255) tCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTc > 1:955855/1‑149 (MQ=255) aaGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATaga > 2:3078714/1‑149 (MQ=255) aaGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATaga > 1:4547958/1‑149 (MQ=255) aaGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATaga > 2:2174863/1‑149 (MQ=255) agctaaaaaaCGGTAGTAATAAGCACAAAAACGCACAAACCGTAACCAAACGCCCAATTTATTTAAAAAGGGACTAGACAGTGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATagag < 1:4920963/142‑1 (MQ=255) gaaTAAACTGGAGTAATACGCACCAAAACGCAAAAACCGAAACCAAACGCGAATTTTATTTAAACCGGGACTAGACTGTGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAgcgc < 1:1413776/147‑1 (MQ=255) aTAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTg > 1:3222717/1‑149 (MQ=255) tAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGAGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCAAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGc > 2:85043/1‑149 (MQ=255) aaaCTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACCGAGGGGTGGGAAGTCCGTATTATCCCCCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGcc > 2:561096/1‑149 (MQ=255) aaaCTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGcc > 2:1364283/1‑149 (MQ=255) aaCTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGccc > 2:624413/1‑149 (MQ=255) tggtgtaaTAAGCAGCAAAACGCAAAAACGGTAACCAACCGCTCATTTTTTTTAATACGGGACTTGACAGTGGGTTGGTAAGTCCGTTTTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTcc < 1:791856/143‑1 (MQ=255) gaggaATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCgg > 1:5080830/1‑149 (MQ=255) aggaATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGa > 1:4499417/1‑149 (MQ=255) ggaATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAACGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAg > 1:4311626/1‑149 (MQ=255) gaATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAgg > 1:30339/1‑149 (MQ=255) aaGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCaga < 2:1163687/149‑1 (MQ=255) agcagcAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGACGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCagag > 2:1853286/1‑149 (MQ=255) agcagcAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCagag > 2:4447764/1‑149 (MQ=255) gcagcaAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAgg > 1:3140526/1‑149 (MQ=255) agcaAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGtc > 2:2984624/1‑149 (MQ=255) aaaaaCGCACAAACCGTAACCAAACGCGAAATTTATTTAAAATGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGtctc < 1:1698412/148‑1 (MQ=255) aaaCGCACAACCCGTACCCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGTGGGGTGGGAAGTCCGTATTATCCCCCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAg < 1:2226160/149‑1 (MQ=255) aaaCGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAg > 1:1033365/1‑149 (MQ=255) aaaCGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAg > 2:2396102/1‑149 (MQ=255) aaaCGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAg > 1:2407650/1‑149 (MQ=255) aaaCGCACAAACCGTAACCAAACGCGCAATTTATTT‑AAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAgg > 1:2120155/1‑149 (MQ=255) aaCGCACAAACCTTAACCAAACGCTAAATTTATTTAAAAAGGGACTAGACAGAGGGGGGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAgg < 1:1956039/149‑1 (MQ=255) acaAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGa > 2:1375411/1‑149 (MQ=255) acaAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGa > 2:3291585/1‑149 (MQ=255) caAACCTTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGTGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGaa < 2:2139088/149‑1 (MQ=255) aCCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATcc < 2:917738/149‑1 (MQ=255) ccGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCt < 2:2895326/149‑1 (MQ=255) cttAACCAAACGCGAAATTTATTTAAAACGGGACTACACAGGGGGTTGGGAAGTCCGTTTTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTg < 1:886511/147‑1 (MQ=255) gTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGt > 1:1734198/1‑149 (MQ=255) tAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTc < 1:266641/149‑1 (MQ=255) aaCCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGTCAGAGGTCTCAGGTTCGAATCCTGTCg > 2:3195377/1‑149 (MQ=255) ccAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCggg > 1:3774977/1‑149 (MQ=255) aaCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGgcgc > 1:170457/1‑149 (MQ=255) gcAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCAt > 2:5150429/1‑149 (MQ=255) cAATTTATTTAAAAAGGGACTAGACAGTGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCAtt < 1:1088117/149‑1 (MQ=255) aaaTTTATTTAAAAAGGGACTAGACAGTGGGTGGGGAAGTCCTTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCAtt < 1:1756132/148‑1 (MQ=255) aaTTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCAttt > 2:1738710/1‑149 (MQ=255) aaTTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCAttt > 2:5033153/1‑149 (MQ=255) aaTTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCAttt < 2:2890277/149‑1 (MQ=255) tttatttaAAACGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAg > 1:4128505/1‑149 (MQ=255) ttatttaAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGt < 2:3788999/149‑1 (MQ=255) atttaAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTcc < 2:4828279/149‑1 (MQ=255) atttaAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTcc > 1:2830249/1‑149 (MQ=255) atttaAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTcc > 2:2424856/1‑149 (MQ=255) tttaAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTccc > 1:255557/1‑149 (MQ=255) aaaaGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGgcg > 2:3624308/1‑149 (MQ=255) aaGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCt > 2:2549626/1‑149 (MQ=255) | ATGTCGCTGTTTGTTGGCATCATCTTTATGCTGGCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCGAATCCTGTCGGGCGCGCCATTTAGTCCCGGCGCTT > CP009273/3975531‑3975827 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |