| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,080,364 | G→T | 9.2% | M1M (ATG→ATT) † | yiiG → | DUF3829 family lipoprotein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,080,364 | 0 | G | T | 9.2% | 930.8 / 14.3 | 272 | M1M (ATG→ATT) † | yiiG | DUF3829 family lipoprotein |
| Reads supporting (aligned to +/- strand): ref base G (91/147); new base T (32/2); total (123/149) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.67e-10 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 281 total aligned reads displayed.
TAAGTCCTGCGAAATATATTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTCCTGAAGCGAAACCTACTGAAG > CP009273/4080216‑4080512 | tAAGTCCTGCGAAATATATTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATg < 1:553750/149‑1 (MQ=255)tAAGTCCTGCGAAATATATTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTGTTGTTTTTTTATTTTTTTTTTTGTCTCTATTATGTTTATATTTATAA‑TGCAAATAAATg > 1:4577993/1‑149 (MQ=255) gTCCTGCGAAATATATTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGaaa < 1:4607152/149‑1 (MQ=255) tCCTGCGAAATATATTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGaaaa < 2:4100377/149‑1 (MQ=255) ccTGCGAAATATATTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAg < 1:3323262/149‑1 (MQ=255) cTGCGAAATATATTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAgg < 2:101101/149‑1 (MQ=255) aaTATATTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATtta < 2:866998/149‑1 (MQ=255) atatatTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATttat < 1:1385822/149‑1 (MQ=255) atatTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTTTTTTTTTATTTTTTATTTTAAATATGTTATTAATATTTTTATAA‑GGCAAATATATTAAAATGGATttattt > 2:1788248/1‑148 (MQ=255) atatTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATttatta < 1:1730860/149‑1 (MQ=255) tatTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTtattat < 2:1344490/149‑1 (MQ=255) atTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATc < 1:3242269/149‑1 (MQ=255) atTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTAATTTATTATTTTCACTCTATTATCTATATATTTATAA‑TGCAATTAAATTAAAAGGAATTtattata > 2:3663481/1‑148 (MQ=255) ttAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCt < 2:1127643/149‑1 (MQ=255) tAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCtt < 2:2980355/149‑1 (MQ=255) aaagagCAGGACTTATTCATTTCGTGAATTGTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTc < 2:5074084/144‑1 (MQ=255) aaaTTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTc < 1:4512755/149‑1 (MQ=255) aaTTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTGTTGTTTTTTTATTTTTTTTTTTTTATATTTTATATATATAATTATAATTGAAATAAAATTAAAAGGAA‑Ttattataataa > 1:640480/1‑144 (MQ=255) ttGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGc < 2:3226919/149‑1 (MQ=255) ttGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTATTTTTTCATTTATTATTTTCACGCTCGTATCTATATATTTATAA‑GGCAATTAAATTAAAAGGAATTTATTATATTACGc > 2:1048127/1‑149 (MQ=255) tGCATGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAACATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCt < 1:4381368/149‑1 (MQ=255) tGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCt < 1:1933404/149‑1 (MQ=255) gCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCta < 1:3858458/149‑1 (MQ=255) gCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTATTTTTTAATTTATTATTTTAAATATAGTATCTATAAAATTATAA‑TGCAAATAAAATAAAATGAATTTATTATAttaaccaa > 2:1912515/1‑143 (MQ=255) aGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCtatt < 1:3701594/149‑1 (MQ=255) ggACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTTTTTTTTTATTTATTATTTTGACTCAATTTTATATAAATTTATAA‑TGCAAATAAATTAAAATGAAATTATTATATTACGCtaata > 1:2908174/1‑149 (MQ=255) ggACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGAGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCtatta < 2:1656788/149‑1 (MQ=255) gACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCtattat < 1:2444420/149‑1 (MQ=255) aCTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATtata < 2:481097/149‑1 (MQ=255) aCTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATtata < 1:1322494/149‑1 (MQ=255) tATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTc < 2:3377663/149‑1 (MQ=255) ttCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTATTTTTTAATTTTTTATGTTCAAAAACTTATATATATATTTATAA‑GGCAATTAAATTTAAAGGAATTTTTTATAATACGCGATTATATTCGc > 2:1733250/1‑149 (MQ=255) tCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTGTTATTTTTTCATTTATTATGTTCACTCTCTTATCTATAAATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGcc > 2:4267644/1‑149 (MQ=255) ttCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCcatca < 2:2515925/149‑1 (MQ=255) tGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTATTTTTTTATTTTTTTTTTTGACTGTCTTTTGTATATATTTTTTA‑GGGACTTAATTTTAAATGTATTTTTTTTGTTGCGCTGTTTTATTAGCCATCCTGtg > 2:4842731/1‑148 (MQ=255) tGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTATTTTTTCATTTATTATGTTCACTCTCTTATATATATATTTATTA‑TGCAATTAAATTAAAATGAATTTATTATATTCCGCTATTATATTAGCCATCATGTc > 2:4614151/1‑149 (MQ=255) tGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTATTTTTTAAATTATTATGTTAAATATCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAAGAATTTATTATATTCAGCTAATAAAGTCGACAAAATGta > 2:1289116/1‑148 (MQ=255) gAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTcc < 1:3581607/149‑1 (MQ=255) ttttattattttattTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTc < 1:2148977/149‑1 (MQ=255) tattattttattTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGt < 1:4277415/149‑1 (MQ=255) attattttattTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTc < 1:5092416/149‑1 (MQ=255) attattttattTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTc < 2:800769/149‑1 (MQ=255) attattttattTATAAACAAAATGCGTGTAGTGGCGTTTTATTTTTTAATTTATTATGTTCACTCTATTATATATATATTTATAA‑TGCAAATAAAATAAAAGGAATTTATTATATTACGCTAATATATTAGCCAAAAAGTCCCACGGTc > 2:696507/1‑149 (MQ=255) attattttattAATAAACAAAATGCGTGTAGTGGCGATTTCTTTTTTCATTTATTATGTTCACACTCTTATCTATATATTTAAAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTc < 2:5202103/149‑1 (MQ=255) attttatttATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGa < 2:1943395/149‑1 (MQ=255) tttatttaTAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACg < 2:2820125/149‑1 (MQ=255) ttatttatAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTGATTTTTTATGTTCACACTCGTGTGTATATATTTTTAA‑GGCACATAAATTGAAAGGAATTTATTTTCTTACGCTATTATAGTCGCCATCATTTCCCACGGGGTGACgg > 2:3331961/1‑149 (MQ=255) atttatAAACAAAATGCGTGTAGTGGCGTGTTATTTTTTTATTTATTAATTTATCAATCATTAATAAATAATTATAA‑GGCAATTAAATGAAAAGTGAATTATTATTTTACGCTATTATAGTAGCCATCATGTACCAACGTCTGACgggg > 2:3058577/1‑148 (MQ=255) taAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGtga < 2:1453664/149‑1 (MQ=255) aaTGCGTGTAGTGGCGTTTTATTTTTTAATTTATTATGTTGAATCTCTTATAAATATATTTATAA‑AGCAATTAAATGAAAAGGAAATTATTATATTACGCTATTATAGTCCCCAGAAAGTACCGCGGTCTGTCGGGTGTTGATGTTaaa > 2:4192121/1‑149 (MQ=255) gtgtAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGc < 1:1706460/149‑1 (MQ=255) tAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGa < 1:1200610/149‑1 (MQ=255) tGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAAc < 2:592513/149‑1 (MQ=255) tGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAAc < 2:3192388/149‑1 (MQ=255) gCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAg < 2:3009374/149‑1 (MQ=255) ttttttCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTc < 2:2553566/149‑1 (MQ=255) tttttCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTcc < 2:3632471/149‑1 (MQ=255) tttttCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTcc > 2:1971126/1‑149 (MQ=255) tttttCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTcc > 1:108314/1‑149 (MQ=255) ttttCATTTATTATGTTCAATCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGTAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTccc < 2:487992/149‑1 (MQ=255) tttCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCg > 2:4559299/1‑149 (MQ=255) tCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGcc > 2:1849468/1‑149 (MQ=255) tttATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGc > 1:2505918/1‑149 (MQ=255) tattatGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCa > 1:2623560/1‑149 (MQ=255) attatGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCaa > 1:3179087/1‑149 (MQ=255) attatGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCaa < 1:2060272/149‑1 (MQ=255) attatGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCaa > 1:1272624/1‑149 (MQ=255) ttatGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAAt > 2:2470210/1‑149 (MQ=255) tGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGt > 2:4954756/1‑149 (MQ=255) tGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGt > 2:1233792/1‑149 (MQ=255) gTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTc > 1:4165968/1‑149 (MQ=255) cACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAAc > 2:574059/1‑149 (MQ=255) tctTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGcc > 2:1662846/1‑149 (MQ=255) aTCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCAc < 2:2438938/149‑1 (MQ=255) tCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCAcc > 2:2101434/1‑149 (MQ=255) tCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCAcc > 1:240216/1‑149 (MQ=255) tatTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTcc > 2:2212378/1‑149 (MQ=255) tatTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTcc < 1:3268028/149‑1 (MQ=255) atTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTCCt < 1:695800/149‑1 (MQ=255) atTTATAA‑GGAAATTAAATTAAAAGGAATTTATTATCTTCCGCTATTATTGTCGCCATAATGTCCCTCGGTCTGTCGGTTTGTGTTTATAAAAAAGCCTAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTCCt < 1:704974/149‑1 (MQ=255) tttATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTAGAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTCCTg < 2:3965013/149‑1 (MQ=255) ataA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTCCTGAAg > 2:1113563/1‑149 (MQ=255) ataA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTCCTGAAg > 2:904127/1‑149 (MQ=255) ataA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTCCTGAAg > 2:1173534/1‑149 (MQ=255) ataA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTCCTGAAg > 2:1555893/1‑149 (MQ=255) taA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTCCTGAAGc > 1:4328402/1‑149 (MQ=255) a‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTCCTGAAGCGa < 1:4106473/149‑1 (MQ=255) a‑GGAAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCACGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTCCTGAAGCGa < 1:1511439/149‑1 (MQ=255) tgaaattaattTAAATGTAATTTATTTTCTTCCGATATTTTAGTCGCCATAATGTCCATCGGTCTTACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTCCTGAAGCGaa < 1:1788248/146‑1 (MQ=255) ggCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTCCTGAAGCGaa > 2:467206/1‑149 (MQ=255) gCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTCCTGAAGCGaaa > 1:900442/1‑149 (MQ=255) gCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTCCTGAAGCGaaa > 1:1348956/1‑149 (MQ=255) gCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTCCTGAAGCGaaa < 1:1645792/149‑1 (MQ=255) gCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTCCTGAAGCGaaa > 1:403653/1‑149 (MQ=255) cAATTAAATGAAAAGGATTTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTCCTGAAGCGAAAc < 1:3032498/149‑1 (MQ=255) aaTTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTCCTGAAGCGAAAcc > 2:4290861/1‑149 (MQ=255) ttATATGAAATGGTATTTTTTATGTTCCGGTATTATTGTCGACATCTTGTCCCTCGGTCTTACGGTTTTTTATTATAAAAAAGCCGAAACATAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTCCTGAAGCGAAACCTa < 1:2654440/149‑1 (MQ=255) tAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTCCTGAAGCGAAACCTAc < 2:2143767/149‑1 (MQ=255) aaTGAAAAGGAATTTATTATCTTCCGATATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTCCTGAAGCGAAACCTACTg < 1:1029732/149‑1 (MQ=255) tGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTCCTGAAGCGAAACCTACTGaa < 1:2974380/149‑1 (MQ=255) | TAAGTCCTGCGAAATATATTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAA‑GGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTCCTGAAGCGAAACCTACTGAAG > CP009273/4080216‑4080512 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |