| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,142,369 | A→T | 10.1% | Y220N (TAC→AAC) | ppc ← | phosphoenolpyruvate carboxylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,142,369 | 0 | A | T | 10.1% | 1113.9 / 90.0 | 327 | Y220N (TAC→AAC) | ppc | phosphoenolpyruvate carboxylase |
| Reads supporting (aligned to +/- strand): ref base A (130/163); new base T (16/17); total (147/180) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.13e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 338 total aligned reads displayed.
AGCAGGACGTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTGGCGCAGGCGACGCATCAGCTGGTTGTGT > CP009273/4142221‑4142517 | aGCAGGACGTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTa > 1:1504330/1‑149 (MQ=255) cAGGACGTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAAt < 2:3668369/149‑1 (MQ=255) cAGGACGTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAAt < 2:2247235/149‑1 (MQ=255) aGGACGTGGCGGGTGATATCGGCAGTGACGGTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAAtt < 2:3583267/149‑1 (MQ=255) ggACGTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTTAttt > 2:3508345/1‑149 (MQ=255) ggACGTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAAttt > 1:4754032/1‑149 (MQ=255) ggACGTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAAttt > 1:3359935/1‑149 (MQ=255) gACGTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTg < 1:4959818/149‑1 (MQ=255) aCGTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTgg < 2:1633010/149‑1 (MQ=255) gTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCCTCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTa < 2:1704722/149‑1 (MQ=255) ggCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTTATTTGGTACg > 2:272927/1‑149 (MQ=255) gCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGc < 2:4009855/149‑1 (MQ=255) gggTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCt < 1:1171993/149‑1 (MQ=255) gggTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCt < 2:952359/149‑1 (MQ=255) ggTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCtt < 1:4205851/149‑1 (MQ=255) ggTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCtt < 1:3501270/149‑1 (MQ=255) tGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTTATTTGGTACGCCTTGc > 1:160638/1‑149 (MQ=255) gATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGcc > 2:2528333/1‑149 (MQ=255) tatCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCcac > 1:402573/1‑149 (MQ=255) atCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCcaca > 1:3644133/1‑149 (MQ=255) tCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAg < 2:5017184/149‑1 (MQ=255) ggCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGc < 2:1096053/149‑1 (MQ=255) ggCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGc < 1:2955536/149‑1 (MQ=255) gCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCt < 2:4663343/149‑1 (MQ=255) tGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGttt < 2:4754042/149‑1 (MQ=255) gTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTTATTTGGTACGCCTTGCCACAGGCTGTTTTCCa > 1:3221409/1‑149 (MQ=255) cGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTa < 1:2604864/149‑1 (MQ=255) gggTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTAc > 1:2749353/1‑149 (MQ=255) gCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCaa > 1:2784640/1‑149 (MQ=255) gTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGc < 1:1787965/149‑1 (MQ=255) gTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGc > 2:2401300/1‑149 (MQ=255) tCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGcc > 1:1292463/1‑149 (MQ=255) tCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCAttt > 2:4426313/1‑149 (MQ=255) gccgccCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTgg < 1:3411415/149‑1 (MQ=255) gccCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCtt < 2:4593514/149‑1 (MQ=255) cccATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTc < 2:453091/149‑1 (MQ=255) cccATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTc > 1:159196/1‑149 (MQ=255) ccATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTTATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCa < 2:2951097/149‑1 (MQ=255) ccATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCa > 1:2823596/1‑149 (MQ=255) cATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGGTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCAt > 2:4915829/1‑149 (MQ=255) aTCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATc > 2:2029763/1‑149 (MQ=255) tCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCt > 2:3176729/1‑149 (MQ=255) ccACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTa > 2:1005262/1‑149 (MQ=255) ccACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTa > 2:525498/1‑149 (MQ=255) cACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTAc > 1:2665604/1‑149 (MQ=255) cACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTAc < 2:667120/149‑1 (MQ=255) cACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTAc > 1:1200881/1‑149 (MQ=255) gTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCt > 2:1922966/1‑149 (MQ=255) gTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCt > 2:1752158/1‑149 (MQ=255) gTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCt < 1:558958/149‑1 (MQ=255) gTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCt > 1:748058/1‑149 (MQ=255) tAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCtt < 1:368965/149‑1 (MQ=255) aaaCGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTTATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTgg < 1:3825265/149‑1 (MQ=255) aaCGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGa < 2:3832576/149‑1 (MQ=255) aaCGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGa > 1:2134298/1‑149 (MQ=255) aCGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGAc < 1:2159202/149‑1 (MQ=255) ggACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGc < 1:2401818/149‑1 (MQ=255) gACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCa < 1:1480760/149‑1 (MQ=255) ccGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGc > 1:1144172/1‑149 (MQ=255) cGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTTATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCt < 1:1708751/149‑1 (MQ=255) aaCAAATTCGACGTGCAGTTTGTAGCCGATGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTTCGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTAc < 2:2637345/149‑1 (MQ=255) aCAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACg < 1:2174486/149‑1 (MQ=255) aaTTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGAt < 1:214246/149‑1 (MQ=255) aTTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGAtt < 1:3923834/149‑1 (MQ=255) aTTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGAtt < 2:619808/149‑1 (MQ=255) ttCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGAttt < 2:3246211/149‑1 (MQ=255) ttCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGAttt < 2:4307408/149‑1 (MQ=255) ttCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGAttt > 2:266883/1‑149 (MQ=255) tCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTc > 1:483183/1‑149 (MQ=255) cGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCa < 2:1327041/149‑1 (MQ=255) gACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCAt < 1:247203/149‑1 (MQ=255) aCGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATc < 2:3376049/149‑1 (MQ=255) cAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTAt < 1:1312136/149‑1 (MQ=255) gTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGc > 1:428284/1‑149 (MQ=255) ttGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCa < 1:3671432/149‑1 (MQ=255) cGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTgg < 1:1853421/149‑1 (MQ=255) aGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGc < 1:2061076/149‑1 (MQ=255) ggTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCg > 2:4151511/1‑149 (MQ=255) ggTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCg > 1:4662999/1‑149 (MQ=255) gTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGa > 1:432815/1‑149 (MQ=255) ttCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTTATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGAt > 2:5093710/1‑149 (MQ=255) ttCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGAt > 1:2298166/1‑149 (MQ=255) ttCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGAt < 1:2513112/149‑1 (MQ=255) ctctTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCa > 2:4841950/1‑149 (MQ=255) tctTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCaa < 1:4106304/149‑1 (MQ=255) ttCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACt > 2:2144470/1‑149 (MQ=255) ccAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTgg > 1:5120692/1‑149 (MQ=255) cAGTTGTTCGTTCAGTTCGCGCAGGTTATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTGgc > 1:1343762/1‑149 (MQ=255) gttgttCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTGgcgc > 2:3056864/1‑149 (MQ=255) ttcAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCCGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTGGCGCAGGCGACg > 1:943587/1‑149 (MQ=255) tcAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTGGCGCAGGCGACGc > 2:3032924/1‑149 (MQ=255) aGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTGGCGCAGGCGACGCAt < 1:4504083/149‑1 (MQ=255) gTTCGCGCAGGTTATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTGGCGCAGGCGACGCATc > 2:5031757/1‑149 (MQ=255) gcgcAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTGGCGCAGGCGACGCATCAGCt < 1:2025676/149‑1 (MQ=255) aGGTTATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTGGCGCAGGCGACGCATCAGCTGGtt > 2:1510603/1‑149 (MQ=255) ggTTATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTGGCGCAGGCGACGCATCAGCTGGTtg < 2:2349025/149‑1 (MQ=255) ggTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTGGCGCAGGCGACGCATCAGCTGGTtg < 1:1983431/149‑1 (MQ=255) tAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTGGCGCAGGCGACGCATCAGCTGGTtgtg < 1:525498/149‑1 (MQ=255) aaTTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTGGCGCGGGCGACGCATCAGCTGGTTgtgt < 1:188191/149‑1 (MQ=255) aaTTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTGGCGCAGGCGACGCATCAGCTGGTTgtgt < 2:2868268/149‑1 (MQ=255) | AGCAGGACGTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTGGCGCAGGCGACGCATCAGCTGGTTGTGT > CP009273/4142221‑4142517 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |