Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 4,562,043 C→A 49.4% intergenic (+311/‑188) yjiS → / → yjiT DUF1127 family protein/pseudogene

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092734,562,0430CA49.4% 85.8 / inf 279intergenic (+311/‑188)yjiS/yjiTDUF1127 family protein/pseudogene
Reads supporting (aligned to +/- strand):  ref base C (63/78);  new base A (63/75);  total (126/153)
Fisher's exact test for biased strand distribution p-value = 9.05e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.77e-01

Only 100 of 284 total aligned reads displayed.

ATTACTTGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGAAAGGTTTTCTTTCAAATTAGAAATGTTGTGG  >  CP009273/4561895‑4562191
                                                                                                                                                    |                                                                                                                                                    
   aCTTGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTATATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAgg                                                                                                                                                   >  2:509405/1‑149 (MQ=255)
    cTTGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGt                                                                                                                                                  <  1:2047186/149‑1 (MQ=255)
    cTTGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGt                                                                                                                                                  >  2:3291611/1‑149 (MQ=255)
    cTTGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGt                                                                                                                                                  >  1:4380598/1‑149 (MQ=255)
      tgtgTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGa                                                                                                                                                >  2:1705107/1‑149 (MQ=255)
      tgtgTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGa                                                                                                                                                >  2:888653/1‑149 (MQ=255)
       gtgtTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGAt                                                                                                                                               <  1:4312882/149‑1 (MQ=255)
        tgtTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGTTTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCTGTTGATa                                                                                                                                              >  2:3515762/1‑149 (MQ=255)
        tgtTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATa                                                                                                                                              >  2:4542726/1‑149 (MQ=255)
        tgtTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATa                                                                                                                                              >  2:1586861/1‑149 (MQ=255)
         gtTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATaa                                                                                                                                             >  2:779605/1‑149 (MQ=255)
                 actgactTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTtg                                                                                                                                     >  1:3070931/1‑149 (MQ=255)
                   tgactTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTtgtg                                                                                                                                   >  2:201644/1‑149 (MQ=255)
                    gactTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGa                                                                                                                                  >  2:2940160/1‑149 (MQ=255)
                       tttACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTa                                                                                                                               <  2:3622534/149‑1 (MQ=255)
                           cAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAg                                                                                                                           <  2:4991289/149‑1 (MQ=255)
                              ctctCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTTATAGATg                                                                                                                        <  1:2999431/149‑1 (MQ=255)
                                ctcATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGt                                                                                                                      >  1:1247997/1‑149 (MQ=255)
                                 tcATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGtt                                                                                                                     >  2:625962/1‑149 (MQ=255)
                                 acATTATTCGCTATTGTGCAGTTTATATAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGtt                                                                                                                     <  2:4258836/148‑1 (MQ=255)
                                  cATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTg                                                                                                                    >  1:2407023/1‑149 (MQ=255)
                                  cATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTg                                                                                                                    >  1:3606732/1‑149 (MQ=255)
                                     tattCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGata                                                                                                                 <  2:3297996/149‑1 (MQ=255)
                                     tattCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGata                                                                                                                 <  1:1874986/149‑1 (MQ=255)
                                       ttCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATc                                                                                                               >  2:4728800/1‑149 (MQ=255)
                                          gCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCAtt                                                                                                            >  2:2798103/1‑149 (MQ=255)
                                           cTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCAttt                                                                                                           >  1:3847921/1‑149 (MQ=255)
                                             aTTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATTGTTGATATCAttttt                                                                                                         >  2:2563224/1‑149 (MQ=255)
                                             aTTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCAttttt                                                                                                         >  1:2636925/1‑149 (MQ=255)
                                                gtgCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATc                                                                                                      <  2:3962156/149‑1 (MQ=255)
                                                        tctcTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTg                                                                                              >  2:2615233/1‑149 (MQ=255)
                                                          tctAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGAt                                                                                            <  1:4456408/149‑1 (MQ=255)
                                                          tctAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGAt                                                                                            >  2:3820519/1‑149 (MQ=255)
                                                              aTTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTtat                                                                                        <  2:1143487/149‑1 (MQ=255)
                                                                tGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCAATTTTATCTAAAATTGATTTATAg                                                                                      <  2:2499370/149‑1 (MQ=255)
                                                                   tttATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTAt                                                                                   <  1:446797/149‑1 (MQ=255)
                                                                   tttATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTAt                                                                                   <  2:5048746/149‑1 (MQ=255)
                                                                   attATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTAt                                                                                   <  1:1333298/148‑1 (MQ=255)
                                                                     tataCCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCg                                                                                 >  2:1052745/1‑149 (MQ=255)
                                                                      ataCCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGa                                                                                >  2:2816533/1‑149 (MQ=255)
                                                                               aaaGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGaaaaa                                                                       <  2:4799015/149‑1 (MQ=255)
                                                                                aaGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGaaaaaa                                                                      >  1:2856684/1‑149 (MQ=255)
                                                                                   ttAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAg                                                                   >  1:298538/1‑149 (MQ=255)
                                                                                   ttAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAg                                                                   <  2:363042/149‑1 (MQ=255)
                                                                                    tAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAgt                                                                  <  1:2816179/149‑1 (MQ=255)
                                                                                    tAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAgt                                                                  <  1:1123069/149‑1 (MQ=255)
                                                                                     aaaTGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAgtt                                                                 >  1:3590040/1‑149 (MQ=255)
                                                                                     aaaTGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAgtt                                                                 <  2:1932364/149‑1 (MQ=255)
                                                                                       aTGTCATCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAgttgt                                                               <  1:4783685/149‑1 (MQ=255)
                                                                                       aTGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAgttgt                                                               >  2:3572727/1‑149 (MQ=255)
                                                                                         gTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGttgttg                                                             >  2:2301719/1‑149 (MQ=255)
                                                                                          tCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTgc                                                            >  2:2216331/1‑149 (MQ=255)
                                                                                           cAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTgcc                                                           <  1:645283/149‑1 (MQ=255)
                                                                                            aGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTgccg                                                          >  1:1249751/1‑149 (MQ=255)
                                                                                            aGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTgccg                                                          >  2:218423/1‑149 (MQ=255)
                                                                                            aGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTgccg                                                          >  2:2715240/1‑149 (MQ=255)
                                                                                             gCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTgccgc                                                         >  2:1988221/1‑149 (MQ=255)
                                                                                             gCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTgccgc                                                         <  1:1048723/149‑1 (MQ=255)
                                                                                             gCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTgccgc                                                         >  2:2997876/1‑149 (MQ=255)
                                                                                             gCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTgacgc                                                         >  2:2131095/1‑149 (MQ=255)
                                                                                              cTACTTAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTgccgcc                                                        <  1:3348243/149‑1 (MQ=255)
                                                                                              cTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTgccgcc                                                        <  2:2277830/149‑1 (MQ=255)
                                                                                                 cTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGa                                                     <  2:1390398/149‑1 (MQ=255)
                                                                                                  tGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAg                                                    >  2:3650141/1‑149 (MQ=255)
                                                                                                  tGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAg                                                    <  1:4169504/149‑1 (MQ=255)
                                                                                                   gAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGt                                                   <  2:177560/149‑1 (MQ=255)
                                                                                                   gAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGt                                                   >  1:730000/1‑149 (MQ=255)
                                                                                                    aaTACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTa                                                  <  1:3957104/149‑1 (MQ=255)
                                                                                                      tACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAAc                                                <  2:1248005/149‑1 (MQ=255)
                                                                                                        cTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACta                                              <  2:3470576/149‑1 (MQ=255)
                                                                                                         tttttGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACtat                                             <  2:1866720/149‑1 (MQ=255)
                                                                                                          ttttGATTGTTTGATATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACtata                                            <  1:3515762/149‑1 (MQ=255)
                                                                                                              gATTGTTTGAGATTTATTTTCATTTTAAATTATAAAATAAGTTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAat                                        <  2:3985904/149‑1 (MQ=255)
                                                                                                                ttGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAatat                                      <  1:2199075/149‑1 (MQ=255)
                                                                                                                ttGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAatat                                      <  2:3895550/149‑1 (MQ=255)
                                                                                                                   tttGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCt                                   <  1:1623496/149‑1 (MQ=255)
                                                                                                                     tGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGGAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGa                                 >  1:1217525/1‑149 (MQ=255)
                                                                                                                      gagaTTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATCGATGGTGGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGaa                                >  2:326466/1‑149 (MQ=255)
                                                                                                                         atttatttTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGAAAgg                             <  1:462365/149‑1 (MQ=255)
                                                                                                                         atttatttTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGAAAgg                             <  1:1952067/149‑1 (MQ=255)
                                                                                                                          tttatttTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGAAAGGt                            >  2:4353051/1‑149 (MQ=255)
                                                                                                                           ttatttTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGAAAGGtt                           >  1:2555510/1‑149 (MQ=255)
                                                                                                                            tatttTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGAAAGGttt                          <  2:2512851/149‑1 (MQ=255)
                                                                                                                             atttTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGAAAGGtttt                         >  1:2375987/1‑149 (MQ=255)
                                                                                                                             atttTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGAAAGGtttt                         <  1:3291611/149‑1 (MQ=255)
                                                                                                                                ttCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGAAAGGTtttctt                      <  2:2667414/149‑1 (MQ=255)
                                                                                                                                ttCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGAAAGGTtttctt                      <  1:3693254/149‑1 (MQ=255)
                                                                                                                                 tCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGAAAGGTtttcttt                     <  1:967227/149‑1 (MQ=255)
                                                                                                                                   aTTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGAAAGGTTTTCTTTCa                   <  2:2076559/149‑1 (MQ=255)
                                                                                                                                      tGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAATTTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGAAAGGTTTTCTTTCAAAt                <  1:1551819/149‑1 (MQ=255)
                                                                                                                                        aaaTTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGAAAGGTTTTCTTTCAAATTa              <  1:525267/149‑1 (MQ=255)
                                                                                                                                        aaaTTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGAAAGGTTTTCTTTCAAATTa              <  1:3126172/149‑1 (MQ=255)
                                                                                                                                        aaaTTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGAAAGGTTTTCTTTCAAATTa              <  1:779605/149‑1 (MQ=255)
                                                                                                                                          aTTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTTTTTCCGCCTGAGTAACTATACAATATTCTGAAAGGTTTTCTTTCAAATTAGa            >  1:4493853/1‑149 (MQ=255)
                                                                                                                                           ttATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGAAAGGTTTTCTTTCAAATTAGaa           >  1:5143293/1‑149 (MQ=255)
                                                                                                                                            tataAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGAAAGGTTTTCTTTCAAATTAGaaa          <  2:961886/149‑1 (MQ=255)
                                                                                                                                             ataAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGAAAGGTTTTCTTTCAAATTAGAAAt         >  1:5027722/1‑149 (MQ=255)
                                                                                                                                                 aaTAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGAAAGGTTTTCTTTCAAATTAGAAAtgttg     >  1:2963223/1‑149 (MQ=255)
                                                                                                                                                  aTCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGAAAGGTTTTCTTTCAAATTAGAAAtgttgt    <  2:4413752/149‑1 (MQ=255)
                                                                                                                                                    cAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGAAAGGTTTTCTTTCAAATTAGAAATGTTGTgg  >  1:411099/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
ATTACTTGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGAAAGGTTTTCTTTCAAATTAGAAATGTTGTGG  >  CP009273/4561895‑4562191

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: