New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 361823272 (0.890)47 (0.160)
+TTAATTAA		 7/262 NT 16.0% coding (831/834 nt) mhpR mhp operon transcriptional activator
?CP009273 4033991 = 251 (0.820)noncoding (115/120 nt) rrfA 5S ribosomal RNA of rrnA operon

GGGAAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCGCCATTCGATGGTGTCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/361680‑361823
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCC  >  CP009273/4033991‑4034085
                                                                                                                                                ||||||||                                                                                               
tggtAACGGTCTTATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATT                                                                                                   <  2:3625012/146‑1
       ggtattATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCAGGGCGCTATCATTCCATACAGCGAATGGTTTTGAACCAGTCGATGGTGTCAATTAATTAAAGGCA                                                                                            >  1:3364379/7‑150
          cttATACGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCA                                                                                         <  2:1920272/147‑1
          cttATAAGAGACACCGGCATACTCTGCGACCTCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCA                                                                                         <  2:4454549/147‑1
          cttATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGACTTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCA                                                                                         >  2:2127667/4‑150
          cttATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGCAAGGTTTTGCACCCTTCGAGGGTGTCAATTAATTAAAGGCATCA                                                                                         >  2:1365779/4‑150
          cttATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGATAGGTTTTGCACCATTCGATGGGGTCAATTAATTAAAGGCATCA                                                                                         >  2:5126071/4‑150
          cttATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAATGGCATCA                                                                                         >  2:4593685/4‑150
          cttATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCA                                                                                         <  2:3073390/147‑1
          cttATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCA                                                                                         >  2:272373/4‑150
          cttATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCA                                                                                         <  2:2640128/147‑1
          cttATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCA                                                                                         <  2:2596005/147‑1
          cttATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCA                                                                                         <  2:2595578/147‑1
          cttATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCA                                                                                         <  2:2566239/147‑1
          cttATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCA                                                                                         >  2:2241334/4‑150
          cttATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCA                                                                                         <  2:3085301/147‑1
          cttATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCA                                                                                         <  2:3304085/147‑1
          cttATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCA                                                                                         <  2:3402747/147‑1
          cttATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCA                                                                                         <  2:4400013/147‑1
          cttATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCA                                                                                         <  2:4611344/147‑1
          cttATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCA                                                                                         <  2:1713400/147‑1
          cttATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCA                                                                                         <  1:2482282/147‑1
          cttATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCA                                                                                         >  1:2784937/4‑150
          cttATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCA                                                                                         <  1:3157912/147‑1
          cttATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCA                                                                                         >  1:322131/4‑150
          cttATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCA                                                                                         <  2:4527180/147‑1
          cttATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCA                                                                                         >  1:1626492/4‑150
          cttATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCA                                                                                         <  1:4088543/147‑1
          cttATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCA                                                                                         <  1:4358156/147‑1
          cttATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCA                                                                                         >  1:4362505/4‑150
          cttATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCA                                                                                         <  2:550235/147‑1
          cttATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCA                                                                                         >  1:4547481/4‑150
          cttATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCA                                                                                         <  2:550054/147‑1
          cttATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCA                                                                                         <  2:1920484/147‑1
          cttATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAAGTAAAGGCATCA                                                                                         >  2:4205624/4‑150
          cttATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGAGGGTGTCAATTAATTAAAGGCATCA                                                                                         >  2:5281542/4‑150
          cttATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGAATCTCTTACGGGCGCTATCATGCCATAACGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGTCATCA                                                                                         >  2:4743624/4‑150
          cttATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACAGTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCA                                                                                         <  1:2447468/147‑1
          cttATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTAATGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCA                                                                                         >  1:4649041/4‑150
          cttATAAGAGACACCGGCATACTCTGCGACATAGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCA                                                                                         >  1:3560565/4‑150
          cttATAAGAGACACCGGCATACTCTGCGACATAGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCA                                                                                         >  1:3560537/4‑150
          cttATAAGAGACACCGGCAGACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCA                                                                                         <  2:4733722/147‑1
            tttatGAGACACCGGCATACTCTGAGACATCGTATAACGTTATTGGTTTCTCTTTAACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGATAGTTTTTTCACCATTCGTTTGTGTCAATTTATTAAAGGAATCAAA                                                                                       <  2:2088799/145‑1
             atcAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCAAAT                                                                                      <  2:706986/147‑1
                        cgtCATACTCTGCGACATCTTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCAAATAAAACGAAAGG                                                                           <  1:4720087/147‑1
                          gctTACTGTGAGACATCGTATAACGTTACTGTTTTCTCATTCACCACTCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAATGTTTTGCACCTTTCGATGGTGTCAATTAATTAAAGGCATCAAATAAAACGATAGGCT                                                                         <  2:251918/147‑1
                          gctTACTCTGCGACATCGTATACCGTTACTGGTTTCACATTCACCACCCTGATTTGTCTCTCTTCCGGGCGCTATCATGCCATACCGCGAATGGTTTTGCAACATTCGTTGGTGTCAATTAATTAAAGGCATCAAATAAAACGAAAGGCT                                                                         <  1:404330/147‑1
                              acaCTGCGACATCGTATAACGTTACTGGTATCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCAAATAAAACGAAAGGCTCAGT                                                                     <  2:3747466/147‑1
                                                                                                 ctagccTGCCATCCCGCGAACGGTTTTGCACCATTCGATGGTGTCAATTAATTCAAGGCAGCAACTCACACGAAAGGCTCAGTCGTCTGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACATATCC  <  1:437342/144‑1
                                                                                                                                                ||||||||                                                                                               
GGGAAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCGCCATTCGATGGTGTCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/361680‑361823
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCC  >  CP009273/4033991‑4034085

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.