New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3180785	NA (NA)	25 (0.080)	18/278	NT	8.8%	pseudogene (6/2445 nt)	yqiG	pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein
	?	CP009273	4346535 =	258 (0.850)					coding (1900/2148 nt)	cadA	lysine decarboxylase, acid‑inducible

CAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3180638‑3180785 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTTCGGTCATACCGTGCAGCTCTTTCTGGAATGCAGCATACGGAGTCATTACCATCGTCGGCAGCACTTCAAATGCGCGATACATCAGATCCGGCAGATTGTGGTGAACAATCAGTTTGTGGATATTCTGAGCCAGTTCCTGAATACG  >  CP009273/4346535‑4346682                                                                                                                                                                                                                                                                                                          CAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACT                                                                                                                                                    >  2:4915994/1‑150             CAGAGGCGTTCGAGCATTATAACGAATGGCATACGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATAACTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATATGGGCAAAACCACATCGGTCATAACG                                                                                                                                        >  1:4018010/1‑150              AGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACTTCGGTCATACCGT                                                                                                                                       >  1:4897950/1‑150                       CGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACTTCGGTCATACCGTGCAGCTCTT                                                                                                                              >  1:151636/1‑150                       CGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACTTCGGTCATACCGTGCAGCTCTT                                                                                                                              >  1:151602/1‑150                           CATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACTTCGGTCATACCGTGCAGCTCTTTCTG                                                                                                                          <  1:981321/150‑1                           CATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACTTCGGTCATACCGTGCAGCTCTTTCTG                                                                                                                          <  1:981476/150‑1                            ATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACTTCGGTCATACCGTGCAGCTCTTTCTGG                                                                                                                         <  2:3534631/150‑1                                  ACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACTTCGGTCATACCGTGCAGCTCTTTCTGGAATGCA                                                                                                                   <  2:2178692/150‑1                                  ACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACTTCGGTCATACCGTGCAGCTCTTTCTGGAATGCA                                                                                                                   <  2:4828212/150‑1                                           ATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACTTCGGTCATACCGTGCAGCTCTTTCTGGAATGCAGCATACGGA                                                                                                          >  2:1528201/1‑150                                           ATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACTTCGGTCATACCGTGCAGCTCTTTCTGGAATGCAGCATACGGA                                                                                                          >  2:1529283/1‑150                                                               TATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACTTCGGTCATACCGTGCAGCTCTTTCTGGAATGCAGCATACGGAGTCATTACCATCGTCGGCAG                                                                                      <  2:5219660/150‑1                                                                   GCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACTTCGGTCATACCGTGCAGCTCTTTCTGGAATGCAGCATACGGAGTCATTACCATCGTCGGCAGCACT                                                                                  <  2:4897950/150‑1                                                                    CTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACTTCGGTCATACCGTGCAGCTCTTTCTGGAATGCAGCATACGGAGTCATTACCATCGTCGGCAGCACTT                                                                                 <  1:1886215/150‑1                                                                    CTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACTTCGGTCATACCGTGCAGCTCTTTCTGGAATGCAGCATACGGAGTCATTACCATCGTCGGCAGCACTT                                                                                 <  1:1871907/150‑1                                                                         CACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACTTCGGTCATACCGTGCAGCTCTTTCTGGAATGCAGCATACGGAGTCATTACCATCGTCGGCAGCACTTCAAAT                                                                            <  2:720950/150‑1                                                                                  ATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACTTCGGTCATACCGTGCAGCTCTTTCTGGAATGCAGCATACGGAGTCATTACCATCGTCGGCAGCACTTCAAATGCGTGATAC                                                                   >  2:2477931/1‑150                                                                                     TGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACTTCGGTCATACCGTGCAGCTCTTTCTGGAATGCAGCATACGGAGTCATTACCATCGTCGGCAGCACTTCAAATGCGCGATACATC                                                                <  2:4061737/150‑1                                                                                                         GGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACTTCGGTCATACCGTGCAGCTCTTTCTGGAATGCAGCATACGGAGTCATTACCATCGTCGGCAGCACTTCAAATGCGCGATACATCAGATCCGGCAGATTGTGGTG                                            <  1:1529283/150‑1                                                                                                         GGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACTTCGGTCATACCGTGCAGCTCTTTCTGGAATGCAGCATACGGAGTCATTACCATCGTCGGCAGCACTTCAAATGCGCGATACATCAGATCCGGCAGATTGTGGTG                                            <  1:1528201/150‑1                                                                                                          GGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACTTCGGTCATACCGTGCAGCTCTTTCTGGAATGCAGCATACGGAGTCATTACCATCGTCGGCAGCACTTCAAATGCGCGATACATCAGATCCGGCAGATTGTGGTGA                                           <  2:290975/150‑1                                                                                                          GGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACTTCGGTCATACCGTGCAGCTCTTTCTGGAATGCAGCATACGGAGTCATTACCATCGTCGGCAGCACTTCAAATGCGCGATACATCAGATCCGGCAGATTGTGGTGA                                           <  2:2974918/150‑1                                                                                                             TAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACTTCGGTCATACCGTGCAGCTCTTTCTGGAATGCAGCATACGGAGTCATTACCATCGTCGGCAGCACTTCAAATGCGCGATACATCAGATCCGGCAGATTGTGGTGAACA                                        >  2:2462275/1‑150                                                                                                                   ATAACAGATGTCTGGAAATATAGGGGCAAATCCACTTCGGTCATACCGTGCAGCTCTTTCTGGAATGCAGCATACGGAGTCATTACCATCGTCGGCAGCACTTCAAATGCGCGATACATCAGATCCGGCAGATTGTGGTGAACAATCAGT                                  >  2:887293/1‑150                                                                                                                      ACAGATGTCTGGAAATATAGGGGCAAATCCACTTCGGTCATACCGTGCAGCTCTTTCTGGAATGCAGCATACGGAGTCATTACCATCGTCGGCAGCACTTCAAATGCGCGATACATCAGATCCGGCAGATTGTGGTGAACAATCAGTTTG                               >  2:4187202/1‑150                                                                                                                                                   CACTTCGGTCATACCGTGCAGCTCTTTCTGGAATGCAGCATACGGAGTCATTACCATCGTCGGCAGCACTTCAAATGCGCGATACATCAGATCCGGCAGATTGTGGTGAACAATCAGTTTGTGGATATTCTGAGCCAGTTCCTGAATACG  >  2:2314885/1‑150                                                                                                                                                                                                                                                                                                          CAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3180638‑3180785 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTTCGGTCATACCGTGCAGCTCTTTCTGGAATGCAGCATACGGAGTCATTACCATCGTCGGCAGCACTTCAAATGCGCGATACATCAGATCCGGCAGATTGTGGTGAACAATCAGTTTGTGGATATTCTGAGCCAGTTCCTGAATACG  >  CP009273/4346535‑4346682

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.