| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,974,073 | C→T | 100% | intergenic (‑79/+50) | ygeA ← / ← araE | Asp/Glu_racemase family protein/arabinose transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,974,073 | 0 | C | T | 97.8% | 787.7 / 2.2 | 254 | intergenic (‑79/+50) | ygeA/araE | Asp/Glu_racemase family protein/arabinose transporter |
| Reads supporting (aligned to +/- strand): ref base C (3/3); new base T (120/128); total (123/131) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 255 total aligned reads displayed.
ATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTA > CP009273/2973926‑2974219 | aTTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAAtttc > 2:4598565/1‑150 (MQ=255) ttATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTTAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑Ta < 1:1150559/150‑1 (MQ=255) tATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TAt > 1:678985/1‑150 (MQ=255) cAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTaa < 2:5016559/150‑1 (MQ=255) aaaCGATAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAAc > 2:1545873/1‑150 (MQ=255) aaCGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTC‑TATTAACg < 1:3458629/150‑1 (MQ=255) aCGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑a < 1:440395/150‑1 (MQ=255) cGATAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑aa > 2:419682/1‑150 (MQ=255) cGATAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑aa > 1:3548468/1‑150 (MQ=255) aTAGTAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑aaaa > 1:4143801/1‑150 (MQ=255) tAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAgg < 2:4315309/150‑1 (MQ=255) tAAGGAATGGTGGATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAgg > 1:5191764/1‑150 (MQ=255) tggATTGGTGGATTCCCAGCTCATGCCTCCCAGCAAACCACTTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTTAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGc < 1:3654730/149‑1 (MQ=255) tggtggATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGAt < 2:456756/150‑1 (MQ=255) ggtggATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATg < 2:670559/150‑1 (MQ=255) gtggATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTC‑TATTAACG‑AAAAAAGGGCCGGATGt > 2:3604741/1‑150 (MQ=255) tggATTCCCAGCTCATACCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTa > 2:4273828/1‑150 (MQ=255) gtaTTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTAc < 1:1312548/148‑1 (MQ=255) gATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGTCTGAATAAGGAAAGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAAAG‑AAAAAAGTGCCGGATGTACa > 2:3790498/1‑150 (MQ=255) aGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATc > 1:4528203/1‑150 (MQ=255) aTTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGcc > 1:1857506/1‑150 (MQ=255) ttCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGccc < 2:883856/150‑1 (MQ=255) ttCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGccc > 1:3108540/1‑150 (MQ=255) gtcctccCCGCAAACCAATTGTGTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGccc < 2:3878806/149‑1 (MQ=255) tcctccCAGCAAACCAATTGTTTTCAGTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCg < 1:3472396/150‑1 (MQ=255) cctccCAGCAAACCAATTGTTTTCTTTCCTCTCTCCGGATGTGTGTAACCGCAACAAGGCTTAATAAGGAACGAGACAAACGCCACAACGGCCAAGTGCCCAATTTC‑TATTACCG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGt < 1:4174465/150‑1 (MQ=255) ctccCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTg > 1:560065/1‑150 (MQ=255) cAGCAAACCACTTGTTTTCATTCCTCTCACCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAAt < 1:2975195/150‑1 (MQ=255) cAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAAt > 2:1186246/1‑150 (MQ=255) caaacaaaTTTTTTTCATTCCTCTCTCCTGATGTGTGTTCCCGCAACATGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAg < 1:3671927/150‑1 (MQ=255) aaCCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAATAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGAc > 2:1549298/1‑150 (MQ=255) aCCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACg > 1:3084689/1‑150 (MQ=255) aCCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACg < 2:2226319/150‑1 (MQ=255) ccAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGc > 2:1917588/1‑150 (MQ=255) atttGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCg < 1:3875705/148‑1 (MQ=255) aaTTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACGAAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGcc > 1:1766983/1‑150 (MQ=255) ttGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGat > 1:3906276/1‑150 (MQ=255) ttGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGat > 2:5184441/1‑150 (MQ=255) gTTTTCATTCCTCTCTCCTGTTGTTTGTTTCCGCAACTTGTCTTATTATGGAACGAGACAAACGCCTCAACGGCCTTGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCTTATGTACAGCACATCCGGCCCGTGAATTCAGACGCCGatat < 2:2112363/150‑1 (MQ=255) ttttCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATAtt < 2:3420974/150‑1 (MQ=255) tttCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATAttt < 1:329982/150‑1 (MQ=255) tttCATTCCTCTCTCCTGAGGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATAttt < 1:5159784/150‑1 (MQ=255) cATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtctc < 2:1989816/150‑1 (MQ=255) aTTCCTCTCTCCTGTTGTGTGGTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCACAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCa < 2:2483808/150‑1 (MQ=255) aTTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCa > 2:1033938/1‑150 (MQ=255) tCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAAc < 2:3726901/150‑1 (MQ=255) tcCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGc < 1:4349275/150‑1 (MQ=255) cTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCt > 1:4697286/1‑150 (MQ=255) aTGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGcc > 2:846245/1‑150 (MQ=255) gtgtgtTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTACTCGCCTGCCAt > 1:1378340/1‑150 (MQ=255) tgtgtTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAATAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATc > 1:1674417/1‑150 (MQ=255) gtgtTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCa < 2:5044889/150‑1 (MQ=255) gtgtTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCa < 1:4897494/150‑1 (MQ=255) gtgtTACCGCAAAATGGCTTAATAAGTAACGAGACAAACGCCTCAACGGCCAAGTGCCCATTTTC‑TATTAACT‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCa < 1:5011252/150‑1 (MQ=255) tgtTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAg < 2:2751361/150‑1 (MQ=255) tACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGttt < 1:1699686/150‑1 (MQ=255) tACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTAC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGttt < 2:4434268/150‑1 (MQ=255) ccGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGc < 2:5231896/150‑1 (MQ=255) gCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGt > 2:1494688/1‑150 (MQ=255) aacaaGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTc < 1:2992496/150‑1 (MQ=255) aacaaGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTc > 1:5082386/1‑150 (MQ=255) acaaGGATTATTACGTAACGAGACAAACGCCTCAACGTCCATGTGCCCAATTTC‑TATTAACT‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCg < 1:85033/150‑1 (MQ=255) aaGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGat > 2:4451821/1‑150 (MQ=255) aaGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGGGCCCAATTTC‑TATTACCG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGat < 1:369063/150‑1 (MQ=255) aaGGCCGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGat < 2:944047/150‑1 (MQ=255) tcaaTAAGCAACGATACAACCGCCTCACCGGCCAAGTGCCAAATTAC‑TATTAACT‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGtt < 1:4936234/148‑1 (MQ=255) gAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTc > 2:2276546/1‑150 (MQ=255) gAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTc > 1:1119069/1‑150 (MQ=255) aaTAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTcc < 2:1606741/150‑1 (MQ=255) aaTAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTcc < 2:893865/150‑1 (MQ=255) aTAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCa < 1:2536233/150‑1 (MQ=255) tAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAg > 1:5287004/1‑150 (MQ=255) aaGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGc > 2:1220442/1‑150 (MQ=255) aGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCg < 2:4891183/150‑1 (MQ=255) gAACGAGACAAACGCCTCACCGGCCAAGTGCCCAAGTTC‑TATGAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTg < 2:3969128/150‑1 (MQ=255) aaCGAGACAAACGCCTCAACGGCCAAGTGCCCAATCGC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGTCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTGTTCGTTCGATATGTTCCAGCGTGa > 1:4809691/1‑150 (MQ=255) aCGAGACAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGAc < 1:1218169/150‑1 (MQ=255) gagaCAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACAt < 2:2364750/150‑1 (MQ=255) gagaCAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACAt > 2:2453321/1‑150 (MQ=255) agaCAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAATGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACAtt > 1:522412/1‑150 (MQ=255) aCAAACGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACAtttt < 1:2632821/150‑1 (MQ=255) aCAAACGCCACAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACAtttt < 1:3736955/150‑1 (MQ=255) aaCGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTgg > 1:1287644/1‑150 (MQ=255) aaCGCCTCAACGGCCAAGTCCCCAA‑CTCATATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTgg < 1:464465/150‑1 (MQ=255) cGCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGtt > 2:4911528/1‑150 (MQ=255) gCCTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGGTCCAGCGTGACATTTTTGGttt < 2:1847158/150‑1 (MQ=255) ccTCAACGGCCAAGTGCCCAATTTC‑TATAAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTc < 1:3149319/150‑1 (MQ=255) cTCAACGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTCCAGCACATCCGGCCCGTGAAATCAGACGCCGAAATTTCTCAACGTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTGTcc > 1:3629348/1‑150 (MQ=255) aaCGGCCAAGGGCCCAATTTC‑TCGTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGa < 2:2986482/150‑1 (MQ=255) aCGGCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGaa < 2:4976221/150‑1 (MQ=255) ggCCAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATg > 2:4024068/1‑150 (MQ=255) ccAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAg < 2:4714047/150‑1 (MQ=255) ccAAGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAg < 1:4598565/150‑1 (MQ=255) aaGTGCCCAATTTC‑TATTAACG‑AACAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGcc < 2:3202386/150‑1 (MQ=255) aGTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCa > 2:2605967/1‑150 (MQ=255) gTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAg < 1:1533039/150‑1 (MQ=255) gTGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAg < 2:1098018/150‑1 (MQ=255) tGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGa > 2:472339/1‑150 (MQ=255) tGCCCAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGa > 1:1542116/1‑150 (MQ=255) cccAATTTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGaaa > 1:1933150/1‑150 (MQ=255) | ATTTATCAAACGATAGTAAGGAATGGTGGATTCCCAGCTCATTCCTCCCAGCAAACCAATTGTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTC‑TATTAACG‑AAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTA > CP009273/2973926‑2974219 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |