| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,107,261 | C→A | 11.9% | D151Y (GAT→TAT) | pppA ← | bifunctional prepilin leader peptidase/ methylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,107,261 | 0 | C | A | 11.9% | 885.6 / 57.0 | 268 | D151Y (GAT→TAT) | pppA | bifunctional prepilin leader peptidase/ methylase |
| Reads supporting (aligned to +/- strand): ref base C (123/112); new base A (10/22); total (133/135) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.69e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 278 total aligned reads displayed.
ACGCAGAACTATTCCGGCTATCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCACCAGCGGATAAC > CP009273/3107112‑3107410 | aCGCAGAACTATTCCGGCTATCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATc < 1:2094933/150‑1 (MQ=255) cAGAACTATTCCGGCTATCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATAggg < 2:229583/150‑1 (MQ=255) gAACTATTCCGGCTATCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCa < 2:4729326/150‑1 (MQ=255) aaCTATTCCGGCTATCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATAGGGCAg > 1:2186784/1‑150 (MQ=255) cTATTCCGGCTATCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGcc > 1:3259467/1‑150 (MQ=255) cTATTCCGGCTATCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGcc > 1:3357101/1‑150 (MQ=255) ttCCGGCTATCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCAtt < 2:1787199/150‑1 (MQ=255) cGGCTATCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGt < 2:3877361/150‑1 (MQ=255) ggCTATCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTg < 1:1986842/150‑1 (MQ=255) tATCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATc < 1:3127919/150‑1 (MQ=255) tATCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATc > 2:4319271/1‑150 (MQ=255) tCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGa < 1:2806807/150‑1 (MQ=255) ccAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAg > 2:3750618/1‑150 (MQ=255) cAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAgg < 1:4100205/150‑1 (MQ=255) cAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAgg < 1:5073185/150‑1 (MQ=255) aaCGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCAGTGGTGATCGAGGt > 1:4501467/1‑150 (MQ=255) aCGCAGAGAGTAAACAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTc < 1:1299939/150‑1 (MQ=255) aCGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTCCACACATCGGGCAGCCAGTGGTGAGCGAGGTc > 1:676569/1‑150 (MQ=255) cGCAGAGAGTAAACAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCg < 2:4868270/150‑1 (MQ=255) gCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGa < 1:5097628/150‑1 (MQ=255) cAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGAt > 1:1704009/1‑150 (MQ=255) gagagTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCTCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAATCATCGGGCAGCCATTGGTGATCGAGGTCGATgt < 2:1608467/150‑2 (MQ=255) agagTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGac > 2:2361615/1‑150 (MQ=255) gagTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGaca < 1:1021270/150‑1 (MQ=255) gagTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATAGGGCAGCCATTGGTGATCGAGGTCGATGaca < 2:4577723/150‑1 (MQ=255) gTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACt > 1:4222980/1‑150 (MQ=255) gTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACt < 1:2591126/150‑1 (MQ=255) tAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTc > 2:5112696/1‑150 (MQ=255) aaaaGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTcgc > 1:3536776/1‑150 (MQ=255) aGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGc > 2:1208168/1‑150 (MQ=255) gATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAAt > 1:4743448/1‑150 (MQ=255) gATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCACTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAAt > 2:3208827/1‑150 (MQ=255) tAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCa < 2:756074/150‑1 (MQ=255) tAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCa < 1:1791423/150‑1 (MQ=255) aaTCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGc > 2:4625845/1‑150 (MQ=255) tCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATAGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCa < 1:3483328/150‑1 (MQ=255) ccaccaGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAgg > 2:2813998/1‑150 (MQ=255) ccaccaGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATAGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAgg < 1:2448735/150‑1 (MQ=255) accaGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATAGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCg < 1:2393016/150‑1 (MQ=255) ccaGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCgg > 2:2662419/1‑150 (MQ=255) caGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGa < 2:5010895/150‑1 (MQ=255) caGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGa > 1:947496/1‑150 (MQ=255) caGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGa > 1:2999727/1‑150 (MQ=255) aCGCCGGTGACTGCATCTTGGAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGataat < 2:2911998/150‑1 (MQ=255) cGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGataata > 1:4328065/1‑150 (MQ=255) ccGGTGACTGCAGCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATatc < 2:3397494/150‑1 (MQ=255) gTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATatcatc < 1:2609088/150‑1 (MQ=255) gACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCACTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCAc > 1:2922924/1‑150 (MQ=255) aCTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCTATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATAATCAcc < 2:4240298/150‑1 (MQ=255) aCTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCAcc < 1:544719/150‑1 (MQ=255) tGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGc < 1:1505077/150‑1 (MQ=255) gCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGcc > 2:4374998/1‑150 (MQ=255) aTCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAg > 1:1858282/1‑150 (MQ=255) cTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCAATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGcc < 1:3038316/150‑1 (MQ=255) cGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATcc < 2:359132/150‑1 (MQ=255) tGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCACTCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCAc > 2:3439607/1‑150 (MQ=255) gCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACttt < 2:4417582/150‑1 (MQ=255) gACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGACCACATCCACTTTCTg < 2:3746981/150‑1 (MQ=255) aCTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTgg > 1:3935051/1‑150 (MQ=255) tctGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGcc > 1:625717/1‑150 (MQ=255) ctgctgCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGcca < 2:5257118/150‑1 (MQ=255) gctgcGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGccaga > 1:1045226/1‑150 (MQ=255) cccATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCcagaccagac > 2:2112247/1‑150 (MQ=255) cATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTc > 2:4740687/1‑150 (MQ=255) cAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCa > 1:3865277/1‑150 (MQ=255) aTCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCaaa > 2:5196600/1‑150 (MQ=255) aGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCaaaaaa < 2:1482257/150‑1 (MQ=255) aGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCaaaaaa > 1:643821/1‑150 (MQ=255) aGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCaaaaaa < 2:2403418/150‑1 (MQ=255) gTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAg < 1:3603798/150‑1 (MQ=255) ccTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCa > 2:4686990/1‑150 (MQ=255) cTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCaa > 1:3694766/1‑150 (MQ=255) tGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCTCCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAg < 1:2682915/150‑1 (MQ=255) gTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGt < 1:74670/150‑1 (MQ=255) gTCCACAATACGCCCTGAGTAAAAACATAGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGt < 1:2947805/150‑1 (MQ=255) acaATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTg < 2:1960945/150‑1 (MQ=255) acaATACGCCCTGAGTAAAAACATAGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTg < 2:3281390/150‑1 (MQ=255) caATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGt > 1:2290234/1‑150 (MQ=255) aaTACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTc < 2:1745091/150‑1 (MQ=255) aaTACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTc > 1:5162601/1‑150 (MQ=255) aaTACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTc > 2:1565666/1‑150 (MQ=255) aTACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCa > 1:3427165/1‑150 (MQ=255) aTACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCa > 1:1632197/1‑150 (MQ=255) aTACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCa > 2:2533362/1‑150 (MQ=255) aTACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCa > 2:3523051/1‑150 (MQ=255) tACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCaa > 2:1396482/1‑150 (MQ=255) cGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCACGTGCTGTCAATa > 1:455325/1‑150 (MQ=255) cccTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAAc < 2:3365030/150‑1 (MQ=255) ccTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAAcc < 1:827144/150‑2 (MQ=255) ccTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACt < 1:5075331/150‑1 (MQ=255) aGTAAAAACATTGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTccac < 1:317573/150‑1 (MQ=255) aGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTccac > 1:1400206/1‑150 (MQ=255) aGTAAAAACATAGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTccac > 1:4629360/1‑150 (MQ=255) gTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTccacc > 1:1225041/1‑150 (MQ=255) aaaCATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCACCAGCg > 2:1098505/1‑150 (MQ=255) aaCATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCACCAGCgg > 2:40403/1‑150 (MQ=255) aaCATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCACCAGCgg > 1:3458119/1‑150 (MQ=255) cATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCACCAGCGGAt < 1:1970585/150‑1 (MQ=255) cGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCACCAGCGGATAAc < 1:2361615/150‑1 (MQ=255) cGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCACCAGCGGATAAc < 2:1851526/150‑1 (MQ=255) | ACGCAGAACTATTCCGGCTATCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCCTGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGGCAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCACCAGCGGATAAC > CP009273/3107112‑3107410 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |