| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,151,733 | A→T | 13.5% | D242V (GAT→GTT) | yqhG → | DUF3828 family putative periplasmic protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,151,733 | 0 | A | T | 13.5% | 705.8 / 19.9 | 303 | D242V (GAT→GTT) | yqhG | DUF3828 family putative periplasmic protein |
| Reads supporting (aligned to +/- strand): ref base A (107/148); new base T (37/4); total (151/152) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.69e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 319 total aligned reads displayed.
TCCGACTCTTACCGCCAGGCGGTTAATGCCTTCTATAAAACCACCTTCAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCGCATTCATGTTCGTTTTACGCTGACCAATGGCAACAACGAAGAGCAAG‑AACTGGTTTTACAGCGGCGCGAAGGCAAGTGGGAAATCGCTGATTTTATCCGCCCGAACAGCG > CP009273/3151585‑3151882 | ccGACTCTTACCGCCAGGCGGTTAATGCCTTCTATAAAACCACCTTCAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTtgatg < 2:4693009/150‑1 (MQ=255) cGACTCTTACCGCCAGGCGGTTAATGCCTTCTATAAAACCACCTTCAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTtgatga < 2:2071732/150‑1 (MQ=255) cGACTCTTACCGCCAGGCGGTTAATGCCTTCTATAAAACCACCTTCAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTtgatga < 1:5201690/150‑1 (MQ=255) gACTCTTACCGCCAGGCGGTTAATGCCTTCTATAAAACCACCTTCAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGaa > 2:2233731/1‑150 (MQ=255) ctctTACCGCCAGGCGGTTAATGCCTTCTATAAAACCACCTTCAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAAt < 2:1257941/150‑1 (MQ=255) tctTACCGCCAGGCGGTTAATGCCTTCTATAAAACCACCTTCAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAAtt < 1:4002024/150‑1 (MQ=255) ctTACCGCCAGGCGGTTAATGCCTTCTATAAAACCACCTTCAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTc < 2:4592003/150‑1 (MQ=255) ttACCGCCAGGCGGTTAATGCCTTCTATAAAACCACCTTCAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCg < 1:5120544/150‑1 (MQ=255) tACCGCCAGGCGGTTAATGCCTTCTATAAAACCACCTTCAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTGTTTTGACGCGGTGGTGTAAttggc > 1:4130245/1‑147 (MQ=255) cGCCAGGCGGTTAATGCCTTCTATAAAACCACCTTCAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTc < 2:4244799/150‑1 (MQ=255) gCCAGGCGGTTAATGCCTTCTATAAAACCACCTTCAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTcc > 2:3353978/1‑150 (MQ=255) ccAGGCGGTTAATGCCTTCTATAAAACCACCTTCAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCt < 1:1020282/150‑1 (MQ=255) ccAGGCGGTTAATGCCTTCTATAAAACCACCTTCAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCt < 2:3222943/150‑1 (MQ=255) ccAGGCGGTTAATGCCTTCTATAAAACCACCTTCAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCt < 1:3854221/150‑1 (MQ=255) cAGGCGGTTAATGCCTTCTATAAAACCACCTTCAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTAACGCGTTGATGAAATTAGAGTCCTg > 2:5301568/1‑150 (MQ=255) ggTTAATGCCTTCTATAAAACCACCTTCAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCAGGAGaa > 2:2833486/1‑150 (MQ=255) gTTAATGCCTTCTATAAAACCACCTTCAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCTGGAGaaa > 2:5162997/1‑150 (MQ=255) gTTAATGCCTTCTATAAAACCACCTTCAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCTGGAGaaa < 1:2796742/150‑1 (MQ=255) gTTAATGCCTTCTATAAAACCACCTTCAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCTGGAGaaa < 1:1647996/150‑1 (MQ=255) gTTAATGCCTTCTATAAAACCACCTTCAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCTGGAGaaa > 2:2517059/1‑150 (MQ=255) ttAATGCCTTCTATAAAACCACCTTCAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTGACGCGGTGATGTAATTAGAGTCCTGGAGaaaa > 1:773752/1‑150 (MQ=255) ttAATGCCTTCTATAAAACCACCTTCAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCTGGAGaaaa > 2:2115795/1‑150 (MQ=255) aaTGCCTTCTCTAAAACCACCTTCAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCTGGAGAAAAcc < 1:3453000/150‑1 (MQ=255) gCCTTCTATAAAACCACCTTCAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTGAAGCGTTGTTGTAATTCGAGTCCTGGAGAAAAacgcc > 1:4576664/1‑150 (MQ=255) ttCTATAAAACCACCTTCAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCTGGAGAAAACCGCCGAt < 2:236690/150‑1 (MQ=255) tCTATAAAACCACCTTCAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCTGGAGAAAACCGCCGAtt < 1:2610597/150‑1 (MQ=255) cTATAAAACCACCTTCAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTAAAGCGTTGATGAAATTCGAGTCCTGGAGAAAACCGCCGATTc > 2:623689/1‑150 (MQ=255) tataAAACCACCTTCAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTTTTTTGAAGCGGTGTTTAAAATAGAGTCCGGGTGAAAACCCCCCAttac > 1:3617435/1‑148 (MQ=255) ataAAACCACCTTCAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCTGGAGAAAACCGCCGATTccg < 1:3078336/150‑1 (MQ=255) aaaCCACCTTCAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTGACGCGGTGATGAAATTAGAGTCCTGGAGAAAACCGCCGATTccgccc > 1:1310806/1‑150 (MQ=255) caccTTCAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTTTTTTGACGCGGTGTTTTAATTAGATTACAGGTGTAAAACGCCGATTaagccccccg > 1:986051/1‑146 (MQ=255) caccTTCAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCGTTTTTTAAGAGGTGATGTAAATAGAGGACGGGGGAAAAACGCCGATTACGCCCCCag > 1:2349843/1‑149 (MQ=255) accTTCAAGACGGCCAATATTCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCGCAtt < 2:4386235/150‑1 (MQ=255) accTTCAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTAACGCGTTGATTTAAATAGAGTCCAGGAGAAAAACCCCGATTaagccccccta > 1:3323581/1‑145 (MQ=255) accTTCAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGGTTTGGCGAAGAGTCGCTTTTTTCACGCGTTGATGAAATTAGAGTCCTGGAGGAAACCCCCGATTCCGCCCGCAtt > 2:1664202/1‑150 (MQ=255) ccTTCAAGCCGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTCCGACAATCCGATCTGTTTTGGCGAAGTGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCGCATTc < 1:4964801/150‑1 (MQ=255) tCAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCGCATTCATg < 1:2894918/150‑1 (MQ=255) cAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGGTGTTGAAAATAGAGTCCGGGAGTAAACCGCCGATTCCGCCCGCATTCATGt > 1:3272803/1‑150 (MQ=255) aGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCGCATTCATGTTc < 2:3270553/150‑1 (MQ=255) aGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCGCATTCATGTTc < 2:3471506/150‑1 (MQ=255) aGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGGTGATGAAATTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCGCCTTCATGTTc > 2:3285760/1‑150 (MQ=255) cGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTAGAGTCCTGGAGAAAACCGCCGATTACGCCCGCATTCATGTTCGtt > 2:3005316/1‑150 (MQ=255) ggCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCGCATTCATGTTCGttt < 1:1796374/150‑1 (MQ=255) ggCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTAACGCGTTGTTGAAAATAGAGTCCTGGTGAAAACCGCCGATTCCGCCCGCATTCAATTTCGttt > 1:2122023/1‑150 (MQ=255) aataatCCCTATTATGATATTAAAATAGAACGTAAATTTATTTACGAAAATCCGATCTGTTTTGGCTAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCGCATTCATGTTCGTTTTACg < 1:4486969/150‑1 (MQ=255) aataatCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCGCATTCATGTTCGTTTTACg < 2:2753002/150‑1 (MQ=255) aataatCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCGCATTCATGTTCGTTTTACg < 2:5191253/150‑1 (MQ=255) aataatCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCGCATTCATGTTCGTTTTACg < 2:1977155/150‑1 (MQ=255) taatCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTAACGCGGTGTTGAAAATAGAGTACAGGAGAAAACCCCCGATTACGCCCGCCATAAAGTTAGTTTTAAGca > 1:4715817/1‑149 (MQ=255) aatCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCAAACGTTTGTTAAAAAAGAGTAAAGGTGAAAACCCCCCCTTCCGCCCCCAATCATGTTAGTTTTaaacat > 1:3790332/1‑145 (MQ=255) aatCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTAACGCGTTGATGAAATTAGAGTCCTGGAGAAAAACGCCGAGTACGCCCCCCATAAAGTTAGTTTTAAGCTg > 1:1712252/1‑150 (MQ=255) atCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGGTGATGAAAATAGAGTCCTGGAGAAAACCCCCGATTACGCCCCCATTCAAGTTAGTTTTAAGCTGa > 1:3353349/1‑150 (MQ=255) taccGATTAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGATTCCTGGAGAAAACCGCCGATTCCGCCCGCATTCATGTTCGTTTTACGCTGAc < 1:254269/148‑1 (MQ=255) tCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCGCATTCATGTTCGTTTTACGCTGAc < 2:771866/150‑1 (MQ=255) gATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCGCATTCATGTTCGTTTTACGCTGACCAAt < 1:1957326/150‑1 (MQ=255) gAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTAACGCGTTTGTGAAAATAGAGTCCAGGCGTAAACCCCCGAATCCGCCCCCAATAATTTTAGGTTTTAGCTGAACAATGGc > 2:1802824/1‑150 (MQ=255) aaGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGGTGTTTAAATTCGAGTCCTGGTGAAAAACGCCGATTACGCCCGCCATCAAGTTAGGTTTTCGCTGACCaaatgca > 2:4037180/1‑145 (MQ=255) aGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCGATTTTAACGCGGTGATGAAATTCGAGTCCGGGAGGAAACCCCCCATTCCGCCCGCATTCATGTTAGTTTTAAGCTGCCCAATTGcaa > 2:1105771/1‑150 (MQ=255) aaTAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGGTGATGAAAATAGAGTCCTGGAGAAAACCCCCGAATACGCCCCCCATCATGTTCGTTTTAAGCTGTCCAAAGGCCACAACCAaga > 1:4805453/1‑150 (MQ=255) aaTAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCGATTTTAACGCGTTGATTAAAATCGAGTCCAGGAGAAAACCCCCCATTCCGCCCCCCATAAAGTTAGTTTTACGCTGACCAAAGGCCACAAcgacga > 2:5123242/1‑150 (MQ=255) aaTAGAACGGAAATTTATTTACGACAATCCGAAGTTTTTTGGCTAAGAGTCGCTATTTTCACGCGTTGTTGAAATTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCACATTCATGTTCGATTTACGCTGACCAATGGCAACAACGAaga < 1:1158308/150‑1 (MQ=255) aTAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCGCATTCATGTTCGTTTTACGCTGACCAATGGCAACGACGAagag < 2:214619/150‑1 (MQ=255) aTAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCGTTTTTGACGCGGTGTTGTAATTCGAGTCCTGGTGTAAAACCCCGATTACGCCCGCAATCATGTTCGTTTTTCGCGGAGCCATGGCAACAACCAagat > 1:4859143/1‑149 (MQ=255) gAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCGCATTCATGTTCGTTTTACGCTGACCCATGGCAACAACGAAGAGCaa > 2:2991350/1‑150 (MQ=255) aaCGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGGTGATGAAATTAGAGTCCAGGATAAAACCCCCGATTACGCCCGCATACAAGTTCGTTTTACGCTGACCAAAGGCAACAACCAAGAGCAAg > 2:1187826/1‑150 (MQ=255) cAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGGTGATGAAATTAGTGTACTGGAGAAAAACCCCGCTTACGCCCGCATTAATGTTCGTTTTTAGCTGACCAAAGGCCACAACGAAGAGCAAG‑AAATg > 2:4129607/1‑150 (MQ=255) cAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCGATTTTAACGCGTTGATTAAATTAGAGTCCAGGAGAAAAACCCCGAATACGCCCCCAATAATGGTGGTTTTAAGCGGGCCAATGGCAACAACGAAGAGCCAG‑AAcag > 1:613011/1‑148 (MQ=255) aaTTTATTTACTACAATCCGATCTGTTTTGGCGTAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCGCATTCATGTTCGTTTTACGCTGACCAATGGCAACAACGAAGAGCAAG‑AACTgg < 2:4513271/150‑1 (MQ=255) aaTTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTGACGCGGTGATGAAATTAGAGTGCAGGAGAAAAACCCCGATTACGCCCGCATTCATGTTCGTTTTACGCTGACCCATTGCAACAACGAAGAGCAAG‑AACggg > 1:4403131/1‑150 (MQ=255) aaTTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCGCATTCATGTTCGTTTTACGCTGACCCATGGCAACAACGAAGAGCAAG‑AACTgg < 2:4727728/150‑1 (MQ=255) tttatttaCGACATTCCGATCTGTTTTGGCGAAGAGTCGCTTTTTTCACGCGTTGATGAATTTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCGCATTCATGTTCGTTTTACGCTGACCAATGGCAACAACGAAGAGCAAG‑AACTGGtt < 1:3369868/150‑1 (MQ=255) ttatttaCGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCGCATTCATGTTCGTTTTACGCTGACCAATGGCAACAACGAAGAGCAAG‑AACTGGttt < 1:3141345/150‑1 (MQ=255) tttaCGACAATCCGATCTGTTTTGGCGAAGAGTCGCTTTTTTGAAGCGTTGGTGAAAATAGAGTCCTGGCGAAAAACCCCCATTACGCCCCCCATCAAGGTAGGTTTTCGCTGACCCAAGGCAACAACGAAGAGCAAGAAAGTGGTTTTa > 1:106310/1‑150 (MQ=255) cGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCGCATTCATGTTCGTTTTACGCTGACCAATGGCAACAACGAAGAGCAAG‑AACTGGTTTTACAgcg < 2:1886427/150‑1 (MQ=255) aCAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCGCATTCATGTTCGTTTTACGCTGACCAATGGCAACAACGAAGAGCAAG‑AACTGGTTTTACAgcggc < 1:2439299/150‑1 (MQ=255) cAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCGCATTCATGTTCGTTTTACGCTGACCAATGGCAACAACGAAGAGCAAG‑AACAGGTTTTACAgcggcg > 2:374179/1‑150 (MQ=255) aaTCCGATCTGTTTTGGCGAAGAGTCGCGATTTTAACCCGGTGATGTAATTCGATTCCAGGTGAAAACCGCCGATTCCGCCCGCAATAAAGTTGGTTTTACGCGGACCAAAGGCAACAACCAAGAGCCCG‑AACAGGGTTTTCAGCGgcgc > 2:1370449/1‑150 (MQ=255) ccGATCTGTTTTGGCGAAGAGTCGCTATTTTAACGCGTTGATGAAATTAGAGTACAGGAGAAAACCGCCGATTACGCCCCCAATCATGTTAGTTTTAAGCTGACCAATGGCAACAACGAAGAGCAAG‑AAAAGGTTTTACAGCGGCGCGaa > 2:5190938/1‑150 (MQ=255) cGATCTGATTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCGCATTCATGTTCGTTTTACGCTGACCAATGGCAACAACGAAGAGCAAG‑AACTGGTTTTACAGCGGCGCGAAg < 2:4801977/150‑1 (MQ=255) gATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCTAGAGAAAACCGCCGATTCCGCCCGCATTCATGTTCGTTTTACGCTGACCAATGGCAACAACGAAGAGCAAG‑AACTGGTTTTACAGCGGCGCGAAgg < 1:664459/150‑1 (MQ=255) gATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAAATCGAGTCCTGGAGAAAACCCCCGAATCCGCCCCCAATCATGTTCGTTTTACGCGGACCCAAGGCAACAACGAAGATCAAG‑AACGGGTTTTACAGCGGCGCGAAgg > 2:194490/1‑150 (MQ=255) aTCTGTTTTGGCGAAGAGTCGCTATTTTGAAGCGTTGATGAAAATAGAGTCCTGGAGAAAAACCCCCATTCCGCCCGCATTGATGTTAGTTTTTAGCTGAACCATTGCAACAAACAAGAGCAAG‑AAAAGGTTTTTAAGCGGCGCGAAGGc > 2:945076/1‑150 (MQ=255) aTCTGTTTTGGCGAAGAGTCGCTATTTTAACGCGTTGATGAAATTAGAGTCCAGGAGAAAAACCCCGATTACGCCCGCATTAATGTTCGTTTTTCGCTGACCCAAGGCCACAAAGAAGAGCAAG‑AACAGGTTTTACAGCGGCGCGAAGGc > 1:868245/1‑150 (MQ=255) cTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCGCATTCATGTTCGTTTTACGCTGACCAATGGCAACAACGAAGAGCAAG‑AACTGGTTTTACAGCGGCGCGAAGGCaa < 2:2424790/150‑1 (MQ=255) tGTTTTGGCGAAGAGTCGCTTTTTTAACCCGGTGTTTAAAATAGAGTCCAGGATAAAAACCCCCAATACGCCCCCAATAAAGTTAGTTTTAAGCAGACCAAAAGCAACAACGAAGAGCACA‑AACTGGTTTTTAAGCCGCGCGAACGCAAg > 2:1579843/1‑150 (MQ=255) ttttGGCTAATAGTCTCTATTTTCACGCGTTGTTGAAATTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCGCATTCATGTTCGTTTTACGCTGACCAATGGCAACAACGAAGAGCAAG‑AACTGGTTTTACAGCGGCGCGAAGGCAAGTg < 1:4340293/150‑1 (MQ=255) ttGGCGAAGAGTCGCTCTTGTCACGCGTGGATGAAAGTCGAGTCCTGGAGACAACCGCCGATTCCGCCCGCATTCATGTTCGTTTTACGCGGACCAATGGCAACAACGAAGAGCAAG‑AACTGGTTTTACAGCGGCGCGAAGGCAAGTggg < 2:2640801/150‑1 (MQ=255) ttGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCGCATTCATGTTCGTTTTACGCTGACCAATGGCAACAACGAAGAGCAAG‑AACTGGTTTTACAGCGGCGCGAAGGCAAGTggg < 1:184763/150‑1 (MQ=255) gAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCGCATTCATGTTCGTTTTACGCTGACCAATGGCAACAACGAAGAGCAAG‑AACTGGTTTTACAGCGGCGCGAAGGCAAGTGGGAAATc < 1:4274508/150‑1 (MQ=255) aaGAGTCGCTATTTTCACGCGTTGATGAAAATCGAGTACTGGAGAAAACCCCCGATTACGCCCGCATTCATGTTCGTTTTACGCTGACCAATGGCAACAACGAAGAGCAAG‑AACTGGTTTTACAGCGGCGCGAAGGCAAGTGGGAAATCg > 2:1722851/1‑150 (MQ=255) gagTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCGCATTCATGTTCGTTTTACGCTGACCAATGGCAACAACGAAGAGCAAG‑AACTGGTTTTACAGCGGCGCGAAGGCAAGTGGGAAATCGCt < 1:2288283/150‑1 (MQ=255) agTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCGCATTCATGTTCGTTTTACGCTGACCAATGGCAACAACGAAGAGCAAG‑AACTGGTTTTACAGCGGCGCGAAGGCAAGTGGGAAATCGCTg < 1:2683525/150‑1 (MQ=255) cGCTATTTTCACGCGTTGATGAAATTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCGCATTCATGTTCGTTTTACGCTGACCAATGGCAACAACGAAGAGCAAG‑AACTGGTTTTACAGCGGCGCGAAGGCAAGTGGGAAATCGCTGAtt < 2:1429889/150‑1 (MQ=255) tATTTTCACGCGTTGATGAAATTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCGCATTCATGTTCGTTTTACGCTGACCAATGGCAACAACGAAGAGCAAG‑AACTGGTTTTACAGCGGCGCGAAGGCAAGTGGGAAATCGCTGATTTTa < 2:474455/150‑1 (MQ=255) ttttCACGCGTTGATGAAATTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCGCATTCATGTTCGTTTTACGCTGACCAATGGCAACAACGAAGAGCAAG‑AACTGGTTTTACAGCGGCGCGAAGGCAAGTGGGAAATCGCTGATTTTATc > 1:4502565/1‑150 (MQ=255) gTTGATGAAATTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCGCATTCATGTTCGTTTTACGCTGACCAATGGCAACAACGAAGAGCAAG‑AACTGGTTTTACAGCGGCGCGAAGGCAAGTGGGAAATCGCTGATTTTATCCGCCCGAAc > 1:1533165/1‑150 (MQ=255) ttGATGAAATTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCGCATTCATGTTCGTTTTACGCTGACCAATGGCAACAACGAAGAGCAAG‑AACTGGTTTTACAGCGGCGCGAAGGCAAGTGGGAAATCGCTGATTTTATCCGCCCGAACa < 2:844261/150‑1 (MQ=255) tgatgaAATTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCGCATTCATGTTCGTTTTACGCTGACCAATGGCAACAACGAAGAGCAAG‑AACTGGTTTTACAGCGGCGCGAAGGCAAGTGGGAAATCGCTGATTTTATCCGCCCGAACAg > 2:3422522/1‑150 (MQ=255) gatgaAATTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCGCATTCATGTTCGTTTTACGCTGACCAATGGCAACAACGAAGAGCAAG‑AACTGGTTTTACAGCGGCGCGAAGGCAAGTGGGAAATCGCTGATTTTATCCGCCCGAACAGc > 2:3701187/1‑150 (MQ=255) atgaAATTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCGCATTCATGTTCGTTTTACGCTGACCAATGGCAACAACGAAGAGCAAG‑AACTGGTTTTACAGCGGCGCGAAGGCAAGTGGGAAATCGCTGATTTTATCCGCCCGAACAGCg < 1:4097062/150‑1 (MQ=255) | TCCGACTCTTACCGCCAGGCGGTTAATGCCTTCTATAAAACCACCTTCAAGACGGCCAATAATCCCGATGAAGATATGCAAATAGAACGGCAATTTATTTACGACAATCCGATCTGTTTTGGCGAAGAGTCGCTATTTTCACGCGTTGATGAAATTCGAGTCCTGGAGAAAACCGCCGATTCCGCCCGCATTCATGTTCGTTTTACGCTGACCAATGGCAACAACGAAGAGCAAG‑AACTGGTTTTACAGCGGCGCGAAGGCAAGTGGGAAATCGCTGATTTTATCCGCCCGAACAGCG > CP009273/3151585‑3151882 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |