| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,243,768 | C→T | 100% | intergenic (+33/‑153) | yqjK → / → yqjF | uncharacterized protein/putative quinol oxidase subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,243,768 | 0 | C | T | 97.2% | 1014.8 / 13.0 | 319 | intergenic (+33/‑153) | yqjK/yqjF | uncharacterized protein/putative quinol oxidase subunit |
| Reads supporting (aligned to +/- strand): ref base C (3/6); new base T (148/162); total (151/168) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.07e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.78e-01 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 320 total aligned reads displayed.
CTGGACGATTCGCCATCCTAATATGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGG > CP009273/3243621‑3243912 | cTGGACGATTCGCCATCCTAATATGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATtcc > 1:2887458/1‑150 (MQ=255) tGGACGATTCGCCATCCTAATATGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCt > 1:1389435/1‑150 (MQ=255) cGATTCGCCATCCTAATATGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCaaa < 1:3929742/150‑1 (MQ=255) ttCGCCATCCTAATATGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAACACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAAttt < 2:1113852/150‑1 (MQ=255) ttCGCCATCCTAATATGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAAttt < 2:735629/150‑1 (MQ=255) tCGCCATCCTAATATGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAAtttt > 1:837740/1‑150 (MQ=255) cGCAATCCTAATAGGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAACACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAAttttt < 1:3608460/150‑1 (MQ=255) cATCCTAATATGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGa < 2:3583768/150‑1 (MQ=255) cATCCTAATATGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTACTCAAATTTTTTGa > 2:979304/1‑150 (MQ=255) ccTAATATGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGa > 1:3688237/1‑150 (MQ=255) tAATATGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGAtt < 2:994328/150‑1 (MQ=255) tAATATGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGAtt > 2:2271072/1‑150 (MQ=255) aaTATGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGAttt > 2:581429/1‑150 (MQ=255) tttGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGAttttt < 1:2840474/148‑1 (MQ=255) atGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTg > 1:4150839/1‑150 (MQ=255) tGCTGGTGCGCTGTGCCCGACGCGGTTTTGTCGTATGGAGCGCCTGGCGTCTGGATAAAACGACACTCAAGCAGCAAAAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCAGTCCGGCCTTATTCCTCAAAATTTTTGAAGAGTTTTGa > 2:123252/1‑150 (MQ=255) tCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGttt < 1:3209623/150‑1 (MQ=255) tCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATNTTTGACAGttt < 1:2759030/150‑1 (MQ=255) ccGCTGGGCCATACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGtttt < 1:3741793/150‑1 (MQ=255) ccGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTCTTCCTCAAATTTGTTGAAGATTTTTGACAGtttt > 2:4304341/1‑150 (MQ=255) ccGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGtttt < 1:2026209/150‑1 (MQ=255) cGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTc < 2:3862403/150‑1 (MQ=255) cGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTc < 2:5305768/150‑1 (MQ=255) gCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTcc < 2:3922391/150‑1 (MQ=255) tGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCtt < 1:2984272/150‑1 (MQ=255) tGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCtt < 1:1145452/150‑1 (MQ=255) gggCCAGCCGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTg < 2:5015190/150‑1 (MQ=255) gggCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGTTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTg < 1:4338768/150‑1 (MQ=255) ggCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGc > 2:1325430/1‑150 (MQ=255) gCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGTTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCt < 2:2392668/150‑1 (MQ=255) gCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAACACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACGTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCt < 1:98113/150‑1 (MQ=255) aGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAAc > 2:4539464/1‑150 (MQ=255) aGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAAc > 1:1371132/1‑150 (MQ=255) aGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAAc > 2:3799415/1‑150 (MQ=255) gcgGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAACACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAatc < 1:3361903/150‑1 (MQ=255) cgGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACGTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAatca < 2:3348223/150‑1 (MQ=255) ggTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAatcat > 1:3612513/1‑150 (MQ=255) ggTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAatcat > 1:3056428/1‑150 (MQ=255) ggTTTTGGCGTATGGAGCGCCTGGCGTCTGGTAAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAatcat < 1:1492901/150‑1 (MQ=255) ttGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCAtt < 2:2841488/150‑1 (MQ=255) ggCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTca < 2:3139076/150‑1 (MQ=255) gTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTcacca > 1:4845250/1‑150 (MQ=255) gTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTcacca > 2:4985608/1‑150 (MQ=255) gAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGttt > 2:1437654/1‑150 (MQ=255) gAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGttt < 1:2214433/150‑1 (MQ=255) aGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTa < 1:3408174/150‑1 (MQ=255) gcgcCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCATCAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTAt < 2:925306/150‑1 (MQ=255) gcgcCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTAt < 2:5207529/150‑1 (MQ=255) cgcCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATg < 1:2604312/150‑1 (MQ=255) gcCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGa > 2:2932074/1‑150 (MQ=255) ccTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGAt > 1:4930171/1‑150 (MQ=255) cTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGAtt > 1:375896/1‑150 (MQ=255) cTGGCGTCTGGTAAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGAtt < 1:4940263/150‑1 (MQ=255) ggCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATtct < 2:3693232/150‑1 (MQ=255) ggtgtgtttAACACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACGTCCCTCTGGCCGGAGCAATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATtctct < 1:979304/143‑1 (MQ=255) cGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATtctct > 1:1928246/1‑150 (MQ=255) cGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATtctct < 1:1661927/150‑1 (MQ=255) gTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATtctctc < 1:2508520/150‑1 (MQ=255) tGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCAt < 2:4886435/150‑1 (MQ=255) aaaaCGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACa > 2:1714123/1‑150 (MQ=255) aaaaCGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACa < 1:627248/150‑1 (MQ=255) aaaCGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAg < 1:4106174/150‑1 (MQ=255) gACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATTATTCTCTCCATCGACAGCAac < 1:4641885/150‑1 (MQ=255) gACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATTATTCTCTCCATCGACAGCAac < 1:585286/150‑1 (MQ=255) ccTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAacgac < 1:4999532/150‑1 (MQ=255) cTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAacgacg < 1:435725/150‑1 (MQ=255) aaGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTa > 2:5100972/1‑150 (MQ=255) agcaACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATAc > 2:2714232/1‑150 (MQ=255) caACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACcg > 1:2180433/1‑150 (MQ=255) cTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCAt > 1:2996357/1‑150 (MQ=255) ttCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCAtt > 2:1969752/1‑150 (MQ=255) cgcgGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGc > 2:1615567/1‑150 (MQ=255) gcgGTTAACTTCCCTCTGGCCGGAGCCATTCCGTCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCTACAGCAACTACGCTAATACCGCGCCATTGca > 1:3858327/1‑150 (MQ=255) gcgGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGca > 2:2105764/1‑150 (MQ=255) gcgGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGca > 2:4757660/1‑150 (MQ=255) cgGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGcac > 2:537756/1‑150 (MQ=255) ggTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGcaca > 1:5169811/1‑150 (MQ=255) ggTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGcaca > 2:4656113/1‑150 (MQ=255) gTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACaa > 1:690067/1‑150 (MQ=255) gTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACaa > 1:3795364/1‑150 (MQ=255) ttAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACaaa < 2:1523736/150‑1 (MQ=255) cTTCCCTCTGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTATCTACATCGACAGCAACGACGCTAATAACGCGCCATTGCACaaaaaaa > 1:5119495/1‑150 (MQ=255) ctctGTCCGTAGACATTCGGGCATTATCCCTCAATTTTTTTTAATATTTTTGACTGTTTTCCTTGCTAACAATAATCTTTCACCACTTGTATGATTCTGTCAATCGACACCCACGACGCTAATACCGCGCCATTGCACAAAAAAACAATc < 1:4523387/150‑1 (MQ=255) ctctGGCCGGATCCATTCCGGACTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATc > 2:509500/1‑150 (MQ=255) ctctGGCCGGAGCCATTCCGGCCTTTTTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATc < 2:2586022/150‑1 (MQ=255) ctGGCCGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATcag < 2:1821153/150‑1 (MQ=255) cGGAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGcc > 2:199527/1‑150 (MQ=255) ggAGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCt > 1:3449228/1‑150 (MQ=255) aGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGa < 2:709534/150‑1 (MQ=255) aGCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGa < 1:2536415/150‑1 (MQ=255) gCCATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAg < 2:4011167/150‑1 (MQ=255) ccATTCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGt > 2:3067628/1‑150 (MQ=255) ttCCGGCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGgc > 2:5278621/1‑150 (MQ=255) ggCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAg > 2:119090/1‑150 (MQ=255) ggCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAg > 1:4042717/1‑150 (MQ=255) gCCTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCGTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGt < 2:4166984/150‑1 (MQ=255) ccTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTg < 1:1028131/150‑1 (MQ=255) cTTATTCCTCAAATTTTTTGAAGATTTTTGACTGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTgg < 1:1621211/150‑1 (MQ=255) cTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTgg > 1:1814742/1‑150 (MQ=255) cTTATTCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTgg > 1:4765431/1‑150 (MQ=255) | CTGGACGATTCGCCATCCTAATATGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGG > CP009273/3243621‑3243912 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |