| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,263,502 | C→T | 5.8% | intergenic (+541/+73) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,263,502 | 0 | C | T | 5.8% | 449.1 / 10.4 | 159 | intergenic (+541/+73) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Reads supporting (aligned to +/- strand): ref base C (90/55); new base T (3/6); total (97/62) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.56e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 170 total aligned reads displayed.
GAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAG > CP009273/3263353‑3263651 | gAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATTTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGc < 2:2906521/150‑1 (MQ=25) aCTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATTTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAATCTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgtc < 1:2555616/150‑1 (MQ=255) aCTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATTTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgtc < 1:4991505/150‑1 (MQ=37) gACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATTTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTg < 1:2466764/150‑1 (MQ=37) cGATAAGCCGCTTTCTTTTGGGTATCGTGTCGTGGACAGTCATACATTTTTCGGCCCCTCCACAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGAc < 2:3524396/150‑1 (MQ=11) cGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGGCATTCAATTTTCTGCCCCACCAAAAGCAAAAACCCCCCCAAGCGGGTTTTTACGGAAACCCGGTGAAACAGACCGAAAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGAc > 1:2465251/1‑150 (MQ=11) gATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATTTTTCTGCCCCTCCAAAAGCAAAAAACCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTTACCGATAAGCCGCGTTCTTTTGGGTATAGCGTCGTGGACa > 1:296037/1‑150 (MQ=255) aTAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATTTTTCTGCCCCTCCAAAAGCAAAAAACCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACAGACCGATAAGCCGCTTTCTTTTGGGTATAGAGTCTAGGACAg > 2:3327955/1‑150 (MQ=11) tAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGt < 1:664045/150‑1 (MQ=37) atccGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTATTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGtca < 1:4648568/148‑1 (MQ=37) agacGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCCTTTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAACCCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGtca < 2:1242972/147‑1 (MQ=255) gCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATTTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGtcat < 1:772517/150‑1 (MQ=37) cGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATTTTTCTTCCCCACCAAAAGCAAAAAACCCCCGAAGCGGGTTTTTAAGTAAACCAGGTGAAACTGAACGATAAGCCGCTTTCTTTAGGGGACAGAGTCATGGAAAGtaaatc > 2:4079453/1‑145 (MQ=11) cGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATTTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGtcattc < 1:488246/150‑1 (MQ=37) gCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATTTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAAGTAAACCAGGTGAAACAGACCGATAAGCCGCGTTCTTTTGGGTAAAGAGACGTATACAGtcaatca > 1:1545441/1‑150 (MQ=11) ctttTGGGTATAGTGTCGTGGACAGTCATTCATTTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCttt < 1:3435775/150‑1 (MQ=37) ctttTGGGTATAGTGTCGTGGACAGTCATTCAATTTTCTGCCCCTCCACAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCttt < 1:531685/150‑1 (MQ=255) tttGGGTAGAGTGTCGTGGACAGTCATTCATTTTTCTGCCCCACCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCt < 2:2124119/150‑1 (MQ=255) ttGGGTATAGTGTCGTGGACAGTCATTCATTTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTg < 1:1018954/150‑1 (MQ=37) ttGGGTATAGTGTCGTGGACAGTCATTCATTTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCGTTCGTTGGGGTATAGCGTCGTGGACAGTCATTGCTCGTTCTg > 1:3977915/1‑150 (MQ=11) gtCGTGGACAGTCATTCATTTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTGTTACGTAAACCAGGTGAAACTGTCCGATAAGCCGCGGTCTGTTGGGGCTAGCGTCGGGGCCAGGCCTGCATGTTACTGccccggcagtc > 2:160547/1‑143 (MQ=11) gTGGACAGTCATTCATTTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCa > 2:4612521/1‑150 (MQ=37) gTGGACAGTCATTCATTTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCGTTCTTTTGGGTAGAGCGTCGTGGGCAGTCATTGATGGTGCTGCGCCGGCAAAAGCa > 1:4968563/1‑150 (MQ=11) aGTCATTCATTTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAAcc > 1:3899102/1‑150 (MQ=37) aGTCATTCATTTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACAAGGTGAAACTGACCGATAAGCCGCTATCTGTTGGGTAGAGCGTCGTGGACAGTCATTCATAATACAGCCCCACCAAAAGCAAAAAcc > 1:693968/1‑150 (MQ=11) tcattcatTTTTCTGCCCCTCCAAAAGCAAAATCCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATATTTCTGCCCCTCCAAAAGCAAAAACccg > 2:1954290/1‑150 (MQ=255) tcattcatTTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCAGCCCCTCCAAAAGCAAAAACccg > 1:2639865/1‑150 (MQ=255) cattcattTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACccg‑c > 2:4970897/1‑150 (MQ=37) cattcattTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATATTTGTGGCCCTCCAAAAGCAAAAACccg‑c > 2:2026105/1‑150 (MQ=255) catTTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCACCTCCAAAAGCAAAAACccg‑ccgca > 2:2778763/1‑148 (MQ=255) atttttCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGAAAGTCCTTCATCATTATGCCCCAACAAAATCAAAAACCCG‑CAGAAg > 1:1222002/4‑150 (MQ=11) atttttCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTGTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGCAg > 1:4301887/4‑150 (MQ=255) tttttCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGc < 2:608594/148‑1 (MQ=37) ttttCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCg < 2:114847/149‑1 (MQ=37) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGtttt > 2:2873769/1‑150 (MQ=37) ccccTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGgtttt > 1:565987/1‑150 (MQ=37) ccTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTAc > 2:335894/1‑150 (MQ=37) tCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGt < 2:2082158/150‑1 (MQ=37) aaaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATATTTCTGCCCCTCCAAAAACAAAAACCCG‑CCGAAGCGGGGTTTTACGTAAAt > 2:3639631/1‑150 (MQ=255) aGCAAAAACCCGCCGAACCGGTTTATTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCa < 2:4143386/150‑1 (MQ=255) aaaaaCCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGt < 1:966592/150‑1 (MQ=17) aaaCCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGa < 2:4334230/150‑1 (MQ=17) gccgAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTATTCCCCTACAAAAGCAAAAAACCG‑CCGAATCGGGTTTTTAAGTAAATCAGGTGAAAATGa > 2:1567806/1‑150 (MQ=11) cgAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGAcc > 2:2937510/1‑150 (MQ=37) cgAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTAGGGTATAGCGTCGTGGAAAGTCAATCATCATTGAGCCCCAACAAAAGCAAAAACCCG‑CCGAAGCGGGTTGTTTCGTAAATCAGGTGAAACTGAcc > 1:4843586/1‑150 (MQ=11) aaGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGa > 1:5290887/1‑150 (MQ=37) cGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACAGACCGATaa > 1:3802933/1‑150 (MQ=37) tACGTACACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGtt < 2:1523593/150‑1 (MQ=255) cGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACCGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTTCGTAAATCAGGTGAAACTGACCGATAAGCCGGGGTCt > 2:918605/1‑150 (MQ=255) cGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCt < 1:4174984/150‑1 (MQ=255) cGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCt > 2:630490/1‑150 (MQ=255) gTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTg < 1:2026155/150‑1 (MQ=255) gTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGGTCTg > 1:889760/1‑150 (MQ=255) tAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGCCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGGTTTTACGTAAATCAGGTGAAACTGCCCGATAAGCCGGGTTCTGt > 2:2941512/1‑150 (MQ=255) tAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt > 2:3435687/1‑150 (MQ=255) acaCCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTc < 1:2140549/148‑1 (MQ=255) aaaCCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCACCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAATCCGGGTTCTGTc > 1:5148619/1‑150 (MQ=255) aaaCCAGGTGAAACTGACCGATAAGCCGCTTTCTTTGGGGTAAAGCGTCGTGGTCAATCATTCCTCGGTAGGCCCCACCAAAAACAAAAACCCGCCCAAACCGGGTGTTAACG‑AAATAAGGTTAAACATACCCAGAATCCGGGGTCTGTc > 1:2346664/1‑150 (MQ=9) catcAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCg > 2:4762239/4‑150 (MQ=2) aGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACCGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGa > 2:342657/1‑150 (MQ=255) ggTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGAc > 2:4151561/1‑150 (MQ=255) gTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACCGTCATTCATCTTTCTGCCCCGCCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACa > 2:1110178/1‑150 (MQ=255) taaaaCTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAg < 1:4762239/148‑1 (MQ=255) aaaCTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtc < 1:2085793/150‑1 (MQ=255) aaaCTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATATTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGTGTTTAAGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtc > 2:5045960/1‑150 (MQ=255) aaaCTGACAGATAAGCCGCTTTCTTTTGGGTTTAGCGTCGTGGACAGTCTTTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtc < 1:4079453/150‑1 (MQ=255) tGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACa > 1:1700894/1‑42 (MQ=38) tGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACa < 2:1700894/42‑1 (MQ=38) gACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAACAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtcattca < 1:194241/150‑1 (MQ=255) aCCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATATTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtcattcat < 1:3653739/150‑1 (MQ=255) aCCGATAAGCCGCGTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCAACTTTCTGCCCCTCCAACAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtcattcat < 2:3717655/150‑1 (MQ=255) aTAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGtcatt < 2:3791282/42‑1 (MQ=38) aaGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGAAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGGGTTCTGt > 2:710758/1‑127 (MQ=9) aaGCCGCTTTCTTTTGGGGATAGCGACGTGGACAGTCACTCATCTTTCTGCCCCTCCACAAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACAGCTTAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGc < 2:678920/150‑1 (MQ=18) aGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGcc < 1:1912398/150‑1 (MQ=255) ccGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAg < 1:335894/150‑1 (MQ=255) cGCTTTCTTTTGGGTATAGCGTCGTGGTCAGTCAGTCAACTTTCTGCCCCTCCACAACCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGc < 1:2590927/150‑1 (MQ=18) cGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGc < 1:2873769/150‑1 (MQ=255) gCTTTCTTTTGGGTATAGGGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCa < 1:396762/150‑1 (MQ=255) ctttctttTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTTACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCaa > 1:1669178/1‑150 (MQ=255) tttctttTGGGTATAGTGTCGTGGACAGTCATTCATTTTTCTGCCCCTCCAAAAGCAATAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAAt < 1:3400851/150‑1 (MQ=255) tttctttTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAAt < 1:4688906/150‑1 (MQ=255) tttctttTGGGTATAGTGTCGTGGACAGTCATTAATCTTTATTCCCCTCCAAAAGTAAAAACCCG‑CCGAAGCGGGTTTTTAAGTAAAAAAGGTGAAACAGACCGATAAACCGGGTTCTTTAGTGTACAGTCAATAATATAGGCCAGCAAt > 1:1565125/1‑150 (MQ=11) tttctttTGGGTATAGCGTCGTGGACAGTCATTCAACTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGGCAGTCATGCATCTAGGCCAGCAAt > 1:2510424/1‑150 (MQ=255) tttctttTGGGTATAGCGTCGTGGACAGACATTCATCTTTCTGCCCCTCCAAAAGCAAAAAACCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAAt > 2:1607754/1‑150 (MQ=255) ctttTGGGTATAGCGTCGTGGACAGTCAATCAACGTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCCGGTTTTTACGTAAAACAGGTTAAACTTAACGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGc > 1:1282326/1‑150 (MQ=18) ttttGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATaa < 1:1643406/104‑1 (MQ=35) tttGGGTAGAGCTTCGTGGACATTCATTCATCTTTCTGCCCCTCCAATAGCAATATCCCG‑CCGAAGAGGGTTTTTACGTAAATCAGGTGAAACTGACCGATATGGCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTc < 2:2130731/150‑1 (MQ=21) ttGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCa > 2:3070084/1‑150 (MQ=255) ttGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCC‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGcaca > 1:3883145/1‑150 (MQ=255) tGGGTATTGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCATAAACCCG‑CCGAAGCTGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCAc < 2:2605331/150‑1 (MQ=255) gggTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACt < 2:5031135/150‑1 (MQ=255) gTATAGCGTCGTGGACAGTCATTCATATTTCTGCCCCTCCAAAAGCAAAAACCCC‑CCGAAGCCGGTTTTTACGTAAATCAGGTGAAACTGACCCATAATCCGGGTTCTGTCGTGGAAAGTCATTCAAATATGCCAACACACGCTCACAgg > 1:1144569/1‑150 (MQ=17) ataGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAACACCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCt < 1:4491954/150‑1 (MQ=255) ataGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCt > 1:1341705/1‑150 (MQ=255) ataGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTAGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCt > 2:302311/1‑150 (MQ=255) aGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCa > 1:3099163/1‑150 (MQ=255) gCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCaa < 1:3327955/150‑1 (MQ=255) cgtcgtGGACAGTCATTCATCTTTCTGCCCCTCCAAACGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAag < 2:4983155/150‑1 (MQ=255) cgtcgtGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAag > 2:3985445/1‑150 (MQ=255) | GAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCG‑CCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAG > CP009273/3263353‑3263651 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |