| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,453,433 | T→A | 17.5% | G86G (GGT→GGA) | gspF → | general secretory pathway component, cryptic |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,453,433 | 0 | T | A | 17.5% | 634.8 / 41.9 | 259 | G86G (GGT→GGA) | gspF | general secretory pathway component, cryptic |
| Reads supporting (aligned to +/- strand): ref base T (156/55); new base A (2/46); total (158/101) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.20e-20 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 261 total aligned reads displayed.
TTCCTGCTGGATATTCGCCCCC‑AAAAAAGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCGTACCCTGGTAAAAGCGGGCGAAAAGA > CP009273/3453284‑3453581 | tCCTGCTGGATATTCGCCCCC‑AAAAAAGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTc > 1:1548373/1‑150 (MQ=255) tgGATATTCGCCCCCAAAAAAAGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTcaacaa > 2:3732725/1‑150 (MQ=255) ggATATTCGCCCCC‑AAAAAAGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAg < 1:3634429/150‑1 (MQ=255) ggATATTCGCCCCC‑AAAAAAGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAg < 2:3103212/150‑1 (MQ=255) gATATTCGCCCCC‑AAAAAAGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGACGAGAGCCTTGCCGTAATCGGTCAACAAAGc > 2:5078821/1‑150 (MQ=255) atatTCGCCCCC‑AAAAAAGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCa > 2:1808469/1‑150 (MQ=255) tatTCGCCCCC‑AAAAAAGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAATCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAg > 1:1610699/1‑150 (MQ=255) tatTCGCCCCC‑AAAAAAGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAg < 2:4098767/150‑1 (MQ=255) tatTCGCCCCC‑AAAAAAGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAg > 1:3982405/1‑150 (MQ=255) ttCGCCCCC‑AAAAAAGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGta > 2:1448480/1‑150 (MQ=255) cGCCCCC‑AAAAAAGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGtaat < 1:1477226/150‑1 (MQ=255) cGCCCCC‑AAAAAAGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGtaat < 2:3831809/150‑1 (MQ=255) gCCCCC‑AAAAAAGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGtaata < 1:1368048/150‑1 (MQ=255) gCCCCC‑AAAAAAGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGtaata > 1:297885/1‑150 (MQ=255) cccc‑AAAAAAGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATa‑aa < 1:1864869/150‑1 (MQ=255) ccc‑AAAAAAGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AAc < 1:5092938/150‑1 (MQ=255) aaaaaGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACt > 2:3263669/1‑150 (MQ=255) aaaaaGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACt > 1:2122314/1‑150 (MQ=255) ttCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGa > 2:3535031/1‑150 (MQ=255) tgggttttAAAAACACGTCGCCGGTGGTTCTGCCTTTGTGAAGTGACGCTTTTCACCCGGCTTTTGGCAACCTTAAGCGCAGCGGCATACCCCCTGTAAGAGAGCTTTGCCTTATTCGGTAAACAAAGCAGTAAAA‑CACGACTGGGTGAc < 2:294895/143‑1 (MQ=255) gggAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACTACTGGGTGACgt > 1:1017613/1‑150 (MQ=255) gggAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACgt > 2:1729487/1‑150 (MQ=255) gggAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACgt > 1:726898/1‑150 (MQ=255) gggAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACgt > 1:4907013/1‑150 (MQ=255) ggAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACgtg > 2:4347354/1‑150 (MQ=255) aGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGtt > 2:1886643/1‑150 (MQ=255) ttAAAAACACGGCGCCCGAGGATCCGCCATAGTGAACGGACGCTTTACACCGGGCTGTTGCCAACATTAAGCGCAGCGGCATTCCCCCGGTAAGAGAGCCTTGCCTTAATCGGTCAACAACCCAGTAATA‑CACGACTGGGTGACGTGTTa < 2:2781478/149‑1 (MQ=255) gTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTa > 2:4590384/1‑150 (MQ=255) aaaaaCACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTGAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTaaa > 1:4344107/1‑150 (MQ=255) aaaCACGTCGCCAGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCGTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATc > 2:1944725/1‑150 (MQ=255) aaCACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCa > 2:2838696/1‑150 (MQ=255) cacGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAgg > 1:3269787/1‑150 (MQ=255) cttCGCCCGTTGATCTGCATTTGTGAACTGACGATTTTCACCCGGCTGTTGGCAACCTTAAGCGCAGCGGCATTACCCTGGTAAGAGAGCCTTGCCTTAATCGGTAAACAAAGATTTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTa < 2:2103215/148‑1 (MQ=255) cGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTa > 1:2881648/1‑150 (MQ=255) ggATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCa > 1:4317029/1‑150 (MQ=255) aTCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATc > 2:39989/1‑150 (MQ=255) aTCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATc > 2:1567143/1‑150 (MQ=255) cAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATccg > 2:2492997/1‑149 (MQ=255) cAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCt > 2:4559016/1‑150 (MQ=255) cAGCCATAGTGAACTGACGCTTTTCACCCGGCAGGTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGCAGAGAGCCTTGCCGTAATCGGTCAACACAGCAGTCATA‑CACGCCTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCt > 2:2629774/1‑150 (MQ=255) aGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCtt > 1:1147111/1‑150 (MQ=255) ttttgttaaCTGAGGATTTTCACCGGGCTGTTGGAAACTTTATGGGCCGGGGCTTTCCCCGTGTATGAGAGCTTTGCCTTATTGGGTAAAAAAAGCTTTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGaa < 2:4066280/143‑1 (MQ=255) taTAGTTAACTGACGGTTTTCCCCCGGCTGTTGGAAACCTTAAGCGCAGCGGAATAACCCCTGTAATAGAGCCTTGCCTTAATGGGTCAACAAAGCTTTAATA‑CACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGaa < 2:3702497/149‑1 (MQ=255) gTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGc > 2:2216436/1‑150 (MQ=255) tGAACGCACGCTTTACCCCCGGCTTTTGCAAACTTTATGCCCCGGGGCATACCCCCTGTAATAGCGCATTGCCTTAATGGGTAAACAATCCTTTAATA‑CACGACTGGGTTACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCa < 2:1438046/150‑1 (MQ=255) aCTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATcc > 2:4674412/1‑150 (MQ=255) aCTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATcc > 2:2020596/1‑150 (MQ=255) cTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATccc > 2:2297617/1‑150 (MQ=255) aCGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCtt > 2:1300952/1‑150 (MQ=255) cgattttCACCCGGCTGTTGGAACCCTTACGCGCAGCGGAATTCCCCCGGTAAGAGAGCGTGGCCGTAATGGTTAAACAAAGCATTAAAA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCttt < 2:4715481/147‑1 (MQ=255) cGCTTTACCCCGGGCTGTTGGCAACCTTAAGCGCCGGGGCTTTCCCCCTGTAAGAGAGCCTTGCCGTAATCGGACAACAACGCAGTAAAA‑CACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCttt < 1:4360658/150‑1 (MQ=255) cTTTTCACCCGGCAGTGGGAAACCTTAAGCGCCGCGGCATTACCCCTGTAATAGAGCATTGCCTTAATCGGACAACAAAGCAGTAAAA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTcc < 2:4312305/150‑1 (MQ=255) cACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGc > 1:2379099/1‑150 (MQ=255) cccGGCTGTTGCCAACCTAACGCCCCGCGGAATACCCCCTGGAAGAGACCTTGGCCTAAATCTGACAAC‑AACCAATAAAACCACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCAt < 1:2558228/150‑1 (MQ=255) ccGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCAtt > 1:1810001/1‑150 (MQ=255) ccGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCAtt > 1:4210307/1‑150 (MQ=255) ttGGAAACCTTCAGCGCTGCGGAATTACCCCTGGAAGAGTGCCTTGCCTTAATCGGACAACAAAGCATTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCAt < 2:3334571/150‑1 (MQ=255) ggCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCAttt > 1:399225/1‑150 (MQ=255) aCCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTccc > 2:4510429/1‑150 (MQ=255) ttAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACg > 1:3718649/1‑150 (MQ=255) tAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGc > 1:3739893/1‑150 (MQ=255) aaGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCt > 1:3025355/1‑150 (MQ=255) cgcgcTGCGGCATACCCCCTGGAAGCGTGCCTGGCCTAAATCGCACAACAACCCATTAAAA‑CACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCtt < 1:2838696/149‑1 (MQ=255) gcgcCGGGGCATTACCCCTGTAAGAGAGCCTTGCCGTAATCGTAAAACAAAGATTTAAAA‑CACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCttt < 2:2416395/150‑1 (MQ=255) gcgcCGCGGCATTACCCCTGGATGAGAGCCTTGCCGTAATCGGACAACACAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCttt < 2:2460142/150‑1 (MQ=255) cAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCg > 1:5292316/1‑150 (MQ=255) cGGAATAACCCCTGTAAGAGAGCCTTGCCTTAATCTGTCAAAAAAGCAGTAATA‑CACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGAtt < 2:5168799/150‑1 (MQ=255) ggCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTc > 1:3944418/1‑150 (MQ=255) ggCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTc > 2:1342247/1‑150 (MQ=255) ggCATCACCCCTGGATGAGAGCCGTGCCTTAATGTGACAAAAAAGCATTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTc < 2:573530/150‑1 (MQ=255) aTTCCCCCTGGATGAGAGACTTGCCTTATTCGTAAAACAAAGCATTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGct < 1:4369205/150‑1 (MQ=255) aTTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGct > 1:123324/1‑150 (MQ=255) cccTTGAATAGAGCCTTCCCTAAATCGTACAACAAATAATAAAAA‑CACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATc < 2:3647331/150‑1 (MQ=255) cccTGGCAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCGTGAAGGGCCTCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTGGTCGATTCGCTCTATc > 2:493341/1‑150 (MQ=255) ccTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCg > 1:4677938/1‑150 (MQ=255) ccTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCg > 1:584104/1‑150 (MQ=255) ctgtatgagcgCCTTGCCTTAATCGGAAAACAACCCATAAAAA‑CACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCGt < 1:5185166/144‑1 (MQ=255) ggAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCGTAc > 1:3555535/1‑150 (MQ=255) taaGAGAGCCTTGCCGTAATCGGTCAAAAAAGCATTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCGTAcc < 2:776940/149‑1 (MQ=255) agagCCTTGCCGTAATCGTACAACACAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCGTACCCTgg < 2:2207404/150‑1 (MQ=255) agagCCGTGCCGTAATCGGTCAACATCGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCGTACCCTgg < 2:2998447/150‑1 (MQ=255) ccacTTTCCTTAATCGCACAAAAAATCTTTAAAA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCGTACCCTGGTa < 1:2472104/147‑1 (MQ=255) agCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCGTACCCTGGTa > 2:4760139/1‑150 (MQ=255) agCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCGTACCCTGGTa > 2:4653594/1‑150 (MQ=255) ccTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCGTACCCTGGTaaa > 1:897045/1‑150 (MQ=255) ccTTGCCGTAATCGGACAACAAAGCATTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCGTACCCTGGTaaa < 2:5256411/150‑1 (MQ=255) cTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCGTACCCTGGTaaaa > 2:4863710/1‑150 (MQ=255) cTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCGTACCCTGGTaaaa > 1:4516374/1‑150 (MQ=255) ttGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCGTACCCTGGTAAAAg > 1:107658/1‑150 (MQ=255) agCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGAATCGCTCTATCGTACCCTGGTCAAAGc > 2:539378/2‑150 (MQ=255) gcttAATGGGTAAAAAAAGCTTTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCGTACCCTGGTAAAAGCgg < 1:2610228/147‑1 (MQ=255) ccGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCGTACCCTGGTAAAAGCgg > 2:3635778/1‑150 (MQ=255) cGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCGTACCCTGGTAAAAGCggg > 1:2298846/1‑150 (MQ=255) gTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCGTACCCTGGTAAAAGCGGGc > 1:2018249/1‑150 (MQ=255) tAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCGTACCCTGGTAAAAGCGGGCg > 2:883796/1‑150 (MQ=255) cGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCGTACCCTGGTAAAAGCGGGCGaaaa > 1:4964903/1‑150 (MQ=255) cGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCGTACCCTGGTAAAAGCGGGCGaaaa > 1:4065794/1‑150 (MQ=255) ggTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCGTACCCTGGTAAAAGCGGGCGAAAag > 2:3451127/1‑150 (MQ=255) gTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCGTACCCTGGTAAAAGCGGGCGAAAaga > 2:4177110/1‑150 (MQ=255) gTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCGTACCCTGGTAAAAGCGGGCGAAAaga > 1:3238472/1‑150 (MQ=255) | TTCCTGCTGGATATTCGCCCCC‑AAAAAAGTTCGGGAGTAAAAACACGTCGCCCGAGGATCAGCCATAGTGAACTGACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAGAGCCTTGCCGTAATCGGTCAACAAAGCAGTAATA‑AACGACTGGGTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGAAGGGCATCCCCTTTCCGATGCATTACAGCATTTTCCCACGCTTTTCGATTCGCTCTATCGTACCCTGGTAAAAGCGGGCGAAAAGA > CP009273/3453284‑3453581 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |