| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,466,238 | A→T | 8.0% | V212V (GTT→GTA) | fusA ← | protein chain elongation factor EF‑G, GTP‑binding |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,466,238 | 0 | A | T | 8.0% | 885.1 / 49.7 | 289 | V212V (GTT→GTA) | fusA | protein chain elongation factor EF‑G, GTP‑binding |
| Reads supporting (aligned to +/- strand): ref base A (131/135); new base T (9/14); total (140/149) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.91e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.42e-01 | |||||||||||
Only 100 of 292 total aligned reads displayed.
ATGATTTCGTTGTTCAGAACGCGCTGACGCAGAGCACCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCC > CP009273/3466089‑3466387 | atgatTTCGTTGTTCAGAACGCGCTGACGCAGAGCACCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCa > 1:4348659/1‑150 (MQ=255) gatTTCGTTGTTCAGAACGCGCTGACGCAGAGCACCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAAc < 1:2051215/150‑1 (MQ=255) atTTCGTTGTTCAGAACGCGCTGACGCAGAGCACCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAAcc > 1:798405/1‑150 (MQ=255) ttCGTTGTTCAGAACGCGCTGACGCAGAGCACCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCAt < 1:594974/150‑1 (MQ=255) ttCGTTGTTCAGAACGCGCTGACGCAGAGCACCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCAt < 2:5303323/150‑1 (MQ=255) cGTTGTTCAGAACGCGCTGACGCAGAGCACCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGt < 1:3232330/150‑1 (MQ=255) gttgttCAGAACGCGCTGACGCAGAGCACCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTc > 2:486413/1‑150 (MQ=255) gttgttCAGAACGCGCTGACGCAGAGCACCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTc < 2:3306451/150‑1 (MQ=255) ttgttCAGAACGCGCTGACGCAGAGCACCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCt < 2:1111452/150‑1 (MQ=255) tgttCAGAACGCGCTGACGCAGAGCACCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTg > 1:3805607/1‑150 (MQ=255) gttCAGAACGCGCTGACGCAGAGCACCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGc > 2:4074120/1‑150 (MQ=255) aaCGCGCTGACGCAGAGCACCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGat > 2:2857241/1‑150 (MQ=255) cgcgCTGACGCAGAGCACCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCCTTCGTTAGCCAGTTCAACCATGTCTGCCGGGatat < 2:1043303/150‑1 (MQ=255) gcgcTGACGCAGAGCACCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATc > 1:1003356/1‑150 (MQ=255) tGACGCAGAGCACCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCg > 1:2323659/1‑150 (MQ=255) aCGCAGAGCACCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTa < 2:1315025/150‑1 (MQ=255) gCACCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAg < 1:2365017/150‑1 (MQ=255) aCCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGt < 1:3027855/150‑1 (MQ=255) cTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTa > 1:2080595/1‑150 (MQ=255) cTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTa < 2:119662/150‑1 (MQ=255) cTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTa > 2:5200683/1‑150 (MQ=255) tttGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTAc < 2:83337/150‑1 (MQ=255) tttGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTAc < 1:2833229/150‑1 (MQ=255) ttGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACg > 1:1761092/1‑150 (MQ=255) gATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGcc < 1:4624808/150‑1 (MQ=255) gATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGcc < 2:696442/150‑1 (MQ=255) tttCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCGTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCt < 2:2017683/150‑1 (MQ=255) tGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTc < 1:1932070/150‑1 (MQ=255) ttCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGc > 2:2571819/1‑150 (MQ=255) tcagtcagTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCTACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGcg > 2:1389349/1‑150 (MQ=255) tcagtcagTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGcg < 2:4375209/150‑1 (MQ=255) agtcagtTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGcgtc < 2:1894224/150‑1 (MQ=255) agtcagtTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGcgtc > 2:985558/1‑150 (MQ=255) cagtTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGtt < 1:4200441/150‑1 (MQ=255) gtTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTcc < 1:1205630/150‑1 (MQ=255) ttcttcACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCa < 1:4553879/150‑1 (MQ=255) caccacCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGa > 2:3987182/1‑150 (MQ=255) caccacCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGa > 1:3751144/1‑150 (MQ=255) accaccCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGAt < 1:3199047/150‑1 (MQ=255) accaccCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGAt > 2:947743/1‑150 (MQ=255) accaccCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGAt < 1:3833214/150‑1 (MQ=255) accaccCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGAt < 1:4148973/150‑1 (MQ=255) caccCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAg < 1:1971195/150‑1 (MQ=255) caccCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAg > 1:952178/1‑150 (MQ=255) caccCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTACAACCAAGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGACGTTCCAGTTGATAg > 2:4706959/1‑150 (MQ=255) ccAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCtt < 1:4463513/150‑1 (MQ=255) ggTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCa > 2:1755640/1‑150 (MQ=255) gTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCAt < 2:3255065/150‑1 (MQ=255) tttttCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCAtttt < 2:4216599/150‑1 (MQ=255) ttCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCAc < 1:5131825/150‑1 (MQ=255) cAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTc > 1:2142380/1‑150 (MQ=255) cAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTc < 2:2494868/150‑1 (MQ=255) cAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTc > 2:2377372/1‑150 (MQ=255) cAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTc < 1:3878199/150‑1 (MQ=255) aGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTca < 2:4932733/150‑1 (MQ=255) ctctTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCTACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTcaac < 2:3204735/150‑1 (MQ=255) ctctTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTAACCAGGTcaac > 1:1260807/1‑150 (MQ=255) tctTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTcaaca < 2:667238/150‑1 (MQ=255) tCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAacaaca > 1:1896282/1‑150 (MQ=255) tCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAacaaca > 2:789270/1‑150 (MQ=255) aGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACAcc < 2:2969889/150‑1 (MQ=255) aaGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCgg > 2:3898405/1‑150 (MQ=255) aGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGt > 2:2895985/1‑150 (MQ=255) gCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCTACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCAACAGGTCAACACCACCGGTg > 1:3633789/1‑150 (MQ=255) cAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAAt < 1:1386052/150‑1 (MQ=255) cTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGtt > 2:2038799/1‑150 (MQ=255) gCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGttct < 2:2334372/150‑1 (MQ=255) gCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGttct > 1:4368654/1‑150 (MQ=255) gATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCTACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCa < 1:537291/150‑1 (MQ=255) gATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCTACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCa < 1:3165638/150‑1 (MQ=255) aTTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAg > 1:4885798/1‑150 (MQ=255) aTTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAg > 2:4802687/1‑150 (MQ=255) aTTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGGTGATAGCTTTCATTTTCAACAGGTCAACAACACCGGTGAAATGTTCTTCAg > 1:113501/1‑150 (MQ=255) gATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCAcc < 1:4074120/150‑1 (MQ=255) aTCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCCGGTCAACAACACCGGTGAAATGTTCTTCAGCACCa > 2:1596950/1‑150 (MQ=255) cAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAAt > 2:319880/1‑150 (MQ=255) cAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAAt < 1:4812318/150‑1 (MQ=255) aGGTTCTGGTGCCATTCGTTAGCCAGTTCTACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCTGCACCAATc < 1:5151716/150‑1 (MQ=255) ggTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATTTTCTTAAGCACCAATCg > 2:3149764/1‑150 (MQ=255) ggTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCg > 1:5170713/1‑150 (MQ=255) tCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCa > 2:3561410/1‑150 (MQ=255) tCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCa < 1:1350056/150‑1 (MQ=255) tGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGc > 1:1362326/1‑150 (MQ=255) ggTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCt < 2:3742596/150‑1 (MQ=255) tGCCATTCGTTAGCCAGTTCTACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGc > 1:3494778/1‑150 (MQ=255) tGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGc < 2:273607/150‑1 (MQ=255) ccATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCcagcagcag > 2:1807988/1‑150 (MQ=255) ccATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAg > 2:1982045/1‑150 (MQ=255) cATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGc > 2:2946966/1‑150 (MQ=255) aTTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCg > 1:1663839/1‑150 (MQ=255) cGTTAGCCAGTTCTACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGaa < 1:2912560/150‑1 (MQ=255) gTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAAc > 1:1436559/1‑150 (MQ=255) aGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTc < 1:3245374/150‑1 (MQ=255) aGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTc < 2:570826/150‑1 (MQ=255) aGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTc < 1:2571819/150‑1 (MQ=255) aGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTc < 1:2216054/150‑1 (MQ=255) gTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTACAGTTGATATCTTTCATTTTCACCAGGTCAACAAAACCGGTGAAATGTTCTTCAGCACCAATAGCCAGCTGCAGCGGAACCGGGttag > 1:482761/1‑148 (MQ=255) cAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCgcgc > 1:2676925/1‑150 (MQ=255) aaCCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGcc > 2:5079727/1‑150 (MQ=255) aaCCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGcc > 2:2212071/1‑150 (MQ=255) | ATGATTTCGTTGTTCAGAACGCGCTGACGCAGAGCACCTTTGATTTCTGCTTCAGTCAGTTCTTCACCACCCAGGTATTTTTCCATCAGCTCTTCAGAAGCTTCAGCTGCGGATTCGATCAGGTTCTGGTGCCATTCGTTAGCCAGTTCAACCATGTCTGCCGGGATATCTTCGTATTCGAAGGTTACGCCCTGGTCAGCGTCGTTCCAGTTGATAGCTTTCATTTTCACCAGGTCAACAACACCGGTGAAATGTTCTTCAGCACCAATCGCCAGCTGCAGCGGAACCGGGTTCGCGCC > CP009273/3466089‑3466387 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |