| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,547,635 | A→T | 5.7% | K398* (AAG→TAG) | malT → | mal regulon transcriptional activator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,547,635 | 0 | A | T | 5.7% | 893.2 / 6.3 | 341 | K398* (AAG→TAG) | malT | mal regulon transcriptional activator |
| Reads supporting (aligned to +/- strand): ref base A (139/178); new base T (22/2); total (161/180) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.40e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 350 total aligned reads displayed.
CAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGAAGCAATTCATCATGCGCTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATGAAATCAAGGACATCAGAGAAGACACCATG > CP009273/3547486‑3547784 | cAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGAAGCAATTCATCATGCGCTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTa > 1:2936595/1‑150 (MQ=255)cAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGAAGCAATTCATCATGCGCTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCGTa > 1:558809/1‑150 (MQ=255) aaGCTGGATGGCCCAGGGATTTCCCAGCGAAGCAATTCATCATGCGCTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGc > 1:2607548/1‑150 (MQ=255) aaGCTGGATGGCCCAGGGATTTCCCAGCGAAGCAATTCATCATGCGCTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGc > 2:1650394/1‑150 (MQ=255) cTGGATGGCCCAGGGATTTCCCAGCGAAGCAATTCATCATGCGCTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCt < 1:4926069/150‑1 (MQ=255) tGGATGGCCCAGGGATTTCCCAGCGAAGCAATTCATCATGCGCTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTg < 2:4634882/150‑1 (MQ=255) tGGATGGCCCAGGGATTTCCCAGCGAAGCAATTCATCATGCGCTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTg > 2:1606998/1‑150 (MQ=255) ggATGGCCCAGGGATTTCCCAGCGAAGCAATACATCATGCGCGGGCGGCAGGCGATGCGCTGCTGCTGCGCGATATTCTGCTTAATCACGCCGGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAGAGCCCAGc > 1:290699/1‑150 (MQ=255) gATGGCCCAGGGATTTCCCAGCGAAGCAATTCATCATGCGCTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGcc < 1:4534333/150‑1 (MQ=255) gATGGCCCAGGGATTTCCCAGCGAAGCAATTCATCATGCGCTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGcc > 1:3252629/1‑150 (MQ=255) aTGGCCCAGGGATTTCCCAGCGAAGCAATTCATCATGCGCTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCg < 1:4436462/150‑1 (MQ=255) ggCCCAGGGATTTCCCAGCGAAGCAATTCATCATGCGCTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTg > 2:3019108/1‑150 (MQ=255) cccAGGGATTTCCCAGCGAAGCAATTCATCATGCGCTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTggg > 1:5177142/1‑150 (MQ=255) aGGGATTTCCCAGCGAAGCAATTCATCATGCGCTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACa < 2:314333/150‑1 (MQ=255) gggATTTCCCAGCGAAGCAATTCATCATGCGCTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAATGCCCTGCCGTGGGACAg > 2:1838341/1‑150 (MQ=255) ggATTTCCCAGCGAAGCAATTCATCATGCGCTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCAGCCCTGGGACaac > 2:5087760/1‑148 (MQ=255) gATTTCCCAGCGAAGCAATTCATCATGCGCTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCt < 2:1370170/150‑1 (MQ=255) aTTTCCCAGCGAAGCAATTCATCATGCGCTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCtt < 2:835701/150‑1 (MQ=255) aTTTCCCAGCGAAGCAATTCATCATGCGCTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCtt < 1:2365483/150‑1 (MQ=255) aTTTCCCAGCGAAGCAATTCATCATGCGCTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCtt > 2:3479737/1‑150 (MQ=255) aTTTCCCAGCGAAGCAATTCATCATGCGCTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCtt > 2:4452153/1‑150 (MQ=255) aTTTCCCAGCGAAGCAATTCATCATGCGCTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCtt < 1:1568774/150‑1 (MQ=255) aTTTCCCAGCGAAGCAATTCATCATGCGCTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCAGCCGTGGGACAGCtt > 2:2715029/1‑150 (MQ=255) tttCCCAGCGAAGCAATTCATCATGCGCTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTg < 2:4537958/150‑1 (MQ=255) ttCCCAGCGAAGCAATTCATCATGCGCTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAATGCCCAGCCCTGGGACAGCTTga > 2:4967861/1‑149 (MQ=255) cccAGCGAAGCAATTCATCATGCGCTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCGTAAGGCCCTGCCGTGGGACAGCTTGCTg > 2:214917/1‑150 (MQ=255) gAAGCAATTCCTCAGGCGCTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGTAAAt < 2:1744382/150‑1 (MQ=255) gAAGCAATTCATCATGCGCTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAAt < 2:500835/150‑1 (MQ=255) gAAGCAATTCATCATGCGCTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAAt < 2:917829/150‑1 (MQ=255) aaGCAATTCATCATGCGCTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCAGCCGGGGGACAGCATGCTGGAAAAta > 2:1866752/1‑149 (MQ=255) aGCAATTCATCATGCGCTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATcc < 2:1170928/150‑1 (MQ=255) cAATTCATCATGCGCTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCAGCCGTGGGACAGCTTGCTGGAAAATCCGc > 1:2607823/1‑150 (MQ=255) aTTCATCATGCGCTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAg < 2:1690402/150‑1 (MQ=255) tcatcaTGCGCTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGtt < 2:188872/150‑1 (MQ=255) atGCGCTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTTATGCCCAGCCGTGGGACAGCTTGCTGGTAAATCCGCAGTTGgtgt > 2:4175631/1‑150 (MQ=255) tGCGCTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGtt > 1:4439865/1‑150 (MQ=255) tGCGCTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGtt < 1:700596/150‑1 (MQ=255) tGCGCTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGtt < 2:1960566/150‑1 (MQ=255) cgcTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTAt < 1:1074746/150‑1 (MQ=255) gcTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTAtt < 1:1323584/150‑1 (MQ=255) gcTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTAtt < 1:1443341/150‑1 (MQ=255) cTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTg < 1:1942447/150‑1 (MQ=255) tGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGc < 1:623803/150‑1 (MQ=255) cggcAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAgg > 2:1695991/1‑150 (MQ=255) ggcAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGc < 1:1882278/150‑1 (MQ=255) ggcAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCCGGGGTCAGCTTGCTGGAAAATACACATTTGGTGTGATTTCAGGc > 2:4230593/1‑150 (MQ=255) gcAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCg < 1:4115679/150‑1 (MQ=255) cAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGt < 1:4968424/150‑1 (MQ=255) aGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTg < 1:2785199/150‑1 (MQ=255) aGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTg < 2:5177142/150‑1 (MQ=255) aGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTg < 1:4771781/150‑1 (MQ=255) ggCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTgg < 2:1993914/150‑1 (MQ=255) tGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGAt < 1:3132800/150‑1 (MQ=255) gcgcTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATg > 2:2906344/1‑150 (MQ=255) cgcTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGc < 1:3564840/150‑1 (MQ=255) cgcTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCGTAAGGCCCGGCCGTGGGGCAGCTTGCTGGTAAATCCCCAGTTGGTGTTTTTTCAGGCGTGGCGGATGc > 1:4648103/1‑150 (MQ=255) gcTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGCa < 1:1801622/150‑1 (MQ=255) tGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCGGTAGGGCCTGCCGGGGGTCGGCGTGGTGGTAAATCAGCCGTTGGTGGTATTTGCGGCGGGGCGGATGCaac > 1:1070590/1‑149 (MQ=255) gATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGCAAAg < 2:392742/150‑1 (MQ=255) gATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGCAAAg < 2:2521198/150‑1 (MQ=255) gATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGCAAAg < 2:2394713/150‑1 (MQ=255) tgctgcGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGCAAAGcc > 2:1247836/1‑150 (MQ=255) gctgcGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCa < 2:4593985/150‑1 (MQ=255) ctgcGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCGGTTGCAAAGccca > 2:3986449/1‑148 (MQ=255) tgcGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCGTAAGGCCCTGCCGTGGGACAGCTTTCTGGAAAATACGCAGTTGGTGTTATTTCAGGCGTGGCTGATGCAAAGCCAAc > 2:5292071/1‑150 (MQ=255) gcgcGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACa < 2:4028358/150‑1 (MQ=255) cgcgATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACAt < 1:3062121/150‑1 (MQ=255) gcgATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATc < 1:3610568/150‑1 (MQ=255) tatTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTa < 2:761157/150‑1 (MQ=255) atTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTAc < 2:4724827/150‑1 (MQ=255) ttCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTTAGGCCCTGCCGTGGGACAGCGTGCTGGAAAATACGCAGGTGGTGTTATTGCAGGCGTGGCGGATGGAAAGCCAACAACGCTACg > 2:1004764/1‑150 (MQ=255) ttAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAg < 1:4826790/150‑1 (MQ=255) aaTCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCGTGCTGGAAAATCCGCCGTTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATAGCTACGGCGAAGtt > 2:2506685/1‑150 (MQ=255) cACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAac < 1:2291130/150‑1 (MQ=255) gCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACAcc < 2:3252629/150‑1 (MQ=255) cTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCt < 1:3517626/150‑1 (MQ=255) tGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCAGCCGTGGGACACCGTGCTGGAAAAAACCCACTTTGTGTTTTTTCAGGCGGTGGGGATTCAAAGCCAACAAAGCTACGGCGAAGGTAACAaccag > 2:3618581/1‑148 (MQ=255) ggAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGc < 2:4059076/150‑1 (MQ=255) ggAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCGTAAGGCCCAGCCGTGGGGCAGCTTGCTGGAAAATCCGCAGTTGGTGTTTTTTCAGGCGTGGCTGTTTCAAAGCCAACAAAGCTACGGCGAAGTTAACACCCAGc > 1:374060/1‑150 (MQ=255) gAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCt < 1:3703521/150‑1 (MQ=255) aGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTa < 2:3382041/150‑1 (MQ=255) aGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCAGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCAGCTa > 2:3854966/1‑150 (MQ=255) gTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAACTCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAg < 2:3119235/150‑1 (MQ=255) tCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTTAGGCCCAGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTg > 2:2792224/1‑150 (MQ=255) aaCCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCt > 2:1154703/1‑150 (MQ=255) aTAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCGTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGCCAAGCCCACATCGCTACGGCGAAGTTAACACCCAGCTAGCCCGGGCTGCAc > 2:4331215/1‑150 (MQ=255) aTAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCAGCCGTGGGCCAGCGTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACAACGCTACGGCGAAGTTAACACCCAGCTAGCCCGTGCTGAAc > 2:4305636/1‑150 (MQ=255) aGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACAt < 2:591994/150‑1 (MQ=255) gCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATg < 1:3999057/150‑1 (MQ=255) cGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATGa < 1:2012798/150‑1 (MQ=255) gAACTGTCGCTGCTGGAAGAGTCGCTTAATGCCCATCCCTGGGACAGCTTGCTGGAAAAACCGCCGTTGGTGTTATTTCAGGCGTGGCTGTTGCAAAGCCAACAACGCGACGGCGAAGTTAACACCCAGCTAGCCCGAGCTGAACAAGaa > 1:3438307/1‑150 (MQ=255) aCTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATGAAAt < 1:791335/150‑1 (MQ=255) tCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATGAAATCAAg < 1:4302716/150‑1 (MQ=255) ctgctgGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATGAAATCAAGGAc < 2:3737707/150‑1 (MQ=255) tgctgGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATGAAATCAAGGACa < 1:3802686/150‑1 (MQ=255) ctgGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATGAAATCAAGGACATc < 2:2936595/150‑1 (MQ=255) tgGAAGAGTCGCTTAAGGCCCAGCCGGGGGTCAGCGTGCTGGAAAATCCGCAGTTGGTGGTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCAGCTAGCCCGTGCGGAACATGAAAACAAGGACATCa > 2:3769780/1‑150 (MQ=255) agTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATGAAATCAAGGACATCAGagaag > 2:1484517/1‑150 (MQ=255) gCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTCGCCCGTGCTGAACATGAAATCAAGGACATCAGAGAAGacac > 2:1456002/1‑150 (MQ=255) tAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATGAAATCAAGGACATCAGAGAAGACACCAt < 1:1275218/150‑1 (MQ=255) | CAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGAAGCAATTCATCATGCGCTGGCGGCAGGCGATGCGCTGATGCTGCGCGATATTCTGCTTAATCACGCCTGGAGTCTGTTCAACCATAGCGAACTGTCGCTGCTGGAAGAGTCGCTTAAGGCCCTGCCGTGGGACAGCTTGCTGGAAAATCCGCAGTTGGTGTTATTGCAGGCGTGGCTGATGCAAAGCCAACATCGCTACGGCGAAGTTAACACCCTGCTAGCCCGTGCTGAACATGAAATCAAGGACATCAGAGAAGACACCATG > CP009273/3547486‑3547784 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |