| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,644,531 | G→A | 100% | intergenic (+509/‑120) | arsC → / → yhiS | arsenate reductase/pseudogene |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,644,531 | 0 | G | A | 98.7% | 1386.4 / 3.3 | 429 | intergenic (+509/‑120) | arsC/yhiS | arsenate reductase/pseudogene |
| Reads supporting (aligned to +/- strand): ref base G (2/4); new base A (171/252); total (173/256) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 429 total aligned reads displayed.
AAAATCACTTCACACACTATCAGAGAACATAATAACTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATA > CP009273/3644384‑3644677 | aaaTCACTTCACACACTATCAGAGAACATAATAACTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATaa < 1:5204835/150‑1 (MQ=255) aTCACTTCACACACTATCAGAGAACATAATAACTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAAtt < 1:1492693/150‑1 (MQ=255) aTCACTTCACACACTATCAGAGAACATAATAACTTTTTAAAATGAGCGCAGTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGACATCAAAGATAAtt > 2:1651610/1‑150 (MQ=255) tCACTTCACACACTATCAGAGAACATAATAACTTTTTAGAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATta > 2:3891546/1‑150 (MQ=255) cACTTCACACACTATCAGAGAACATAATAACTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATtat > 1:1367184/1‑150 (MQ=255) aCTTCACACACTATCAGAGAACATAATAACTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATtata < 2:4369948/150‑1 (MQ=255) cTTCACACACTATCAGAGAACATAATAACTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTatat < 2:5062552/150‑1 (MQ=255) tCACACACTATCAGAGAACATAATAACTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCa < 1:3675339/150‑1 (MQ=255) acacTATCAGAGAACATAATAACTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGaa < 2:4570358/150‑1 (MQ=255) cacTATCAGAGAACATAATAACTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAg > 1:2839189/1‑150 (MQ=255) acTATCAGAGAACATAATAACTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGa > 1:1038372/1‑150 (MQ=255) cTATCAGAGAACATAATAACTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGat < 2:4712620/150‑1 (MQ=255) aTCAGAGAACATAATAACTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGatat < 1:4210792/150‑1 (MQ=255) agagAACATAATAACTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAAc < 2:2243584/150‑1 (MQ=255) gagaACATAATAACTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACg > 1:1736861/1‑150 (MQ=255) ataataACTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTAc < 1:3345708/150‑1 (MQ=255) ataataACTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTAc < 1:4299517/150‑1 (MQ=255) aataaCTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACAt < 2:428763/150‑1 (MQ=255) aataaCTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACAt < 1:2571351/150‑1 (MQ=255) ataaCTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACAtt < 1:3593030/150‑1 (MQ=255) taaCTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACAttt < 2:3787504/150‑1 (MQ=255) taaCTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACAttt < 2:2752325/150‑1 (MQ=255) aCTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTAt > 1:1246333/1‑150 (MQ=255) cTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTAtt < 2:1516648/150‑1 (MQ=255) ttAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATtgtgt < 2:2101702/150‑1 (MQ=255) aaaaTGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTgtgtgt < 1:77579/150‑1 (MQ=255) aaaTGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTATCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTa < 2:927489/150‑1 (MQ=255) aaaTGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTa > 2:3511706/1‑150 (MQ=255) aaaTGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTa > 2:3704749/1‑150 (MQ=255) aaaTGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTa < 2:2378355/150‑1 (MQ=255) aaTGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTag < 1:275715/150‑1 (MQ=255) aTGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTaga > 1:4783488/1‑150 (MQ=255) aTGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTaga < 1:3506391/150‑1 (MQ=255) gAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTagaag < 2:1883853/150‑1 (MQ=255) aGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTagaaga > 1:4669787/1‑150 (MQ=255) cgcATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGaaa > 2:2364042/1‑150 (MQ=255) gcATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGaaaa > 2:383272/1‑150 (MQ=255) cATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAAt < 2:3231068/150‑1 (MQ=255) aTTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATc < 2:1013042/150‑1 (MQ=255) gATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTc > 1:4143184/1‑150 (MQ=255) aTAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTcc > 1:1916302/1‑150 (MQ=255) tAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCt < 1:201740/150‑1 (MQ=255) tAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCt < 2:1071420/150‑1 (MQ=255) aGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTg > 1:4065344/1‑150 (MQ=255) gttgttAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGt > 2:1368819/1‑150 (MQ=255) ttgttAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGtt < 1:3067191/150‑1 (MQ=255) gttAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCt > 1:690310/1‑150 (MQ=255) tAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTaa < 1:4693735/150‑1 (MQ=255) aaCGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAAt < 2:2855434/150‑1 (MQ=255) aaCGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAAt < 2:3984922/150‑1 (MQ=255) aCGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAAtt < 2:1928065/150‑1 (MQ=255) aCGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAAtt < 1:5056019/150‑1 (MQ=255) aCGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAAtt < 1:2232659/150‑1 (MQ=255) aCGATTTCCTTTACGATACTATCACTACCATTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAAAGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAAtt < 1:3607956/150‑1 (MQ=255) ttCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCa > 2:4635779/1‑150 (MQ=255) tCCTTTACGATACTATCACTACACTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCaa < 1:4579155/150‑1 (MQ=255) ccTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAAt < 1:3308368/150‑1 (MQ=255) ccTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAAt < 2:2572530/150‑1 (MQ=255) aCGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTaaa < 1:94268/150‑1 (MQ=255) aCGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCATGTTCTAATTATCCAATTTaaa > 1:3423040/1‑150 (MQ=255) gATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACa > 1:3798397/1‑150 (MQ=255) aTACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACAt > 1:4511430/1‑150 (MQ=255) tACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATc < 2:1757291/150‑1 (MQ=255) aCTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCt < 2:3348871/150‑1 (MQ=255) cTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCtt < 1:2854902/150‑1 (MQ=255) tATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTa > 2:307739/1‑150 (MQ=255) cACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGGAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCa > 2:1813553/1‑150 (MQ=255) aCTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCAt < 1:978659/150‑1 (MQ=255) aCTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCAt < 2:831825/150‑1 (MQ=255) cTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATa < 2:71947/150‑1 (MQ=255) cTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATa < 1:1153578/150‑1 (MQ=255) ccTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAAc > 2:5173760/1‑150 (MQ=255) cTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACa < 2:4251767/150‑1 (MQ=255) tttttACACACAAATATTCCCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAat < 2:4483979/150‑1 (MQ=255) tttttACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAat < 1:2981318/150‑1 (MQ=255) ttACACACAAATATTACCGGGTGGAGATAAAAGGTAAATAAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAatgat < 2:4819688/150‑1 (MQ=255) cacaAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATa < 2:1987831/150‑1 (MQ=255) aaaTATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAgg > 1:55414/1‑150 (MQ=255) aaTATTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGa > 2:4938115/1‑150 (MQ=255) atatTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGaa > 2:895651/1‑150 (MQ=255) atatTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGaa < 2:593172/150‑1 (MQ=255) atTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAAtt < 1:3911641/150‑1 (MQ=255) atTACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAAtt > 1:3130730/1‑150 (MQ=255) ttACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAAttt < 1:2336721/150‑1 (MQ=255) tACCGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAAtttt < 2:1217039/150‑1 (MQ=255) ccGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTAt < 1:489785/150‑1 (MQ=255) ccGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTAt < 2:253741/150‑1 (MQ=255) cGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATg < 1:5734/150‑1 (MQ=255) cGGGTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATg < 1:3891546/150‑1 (MQ=255) gTGGAGATAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCa > 1:1343539/1‑150 (MQ=255) gagaTAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAAtt > 1:4815101/1‑150 (MQ=255) gaTAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGa > 2:4752608/1‑150 (MQ=255) tAACAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACACATGATGAATAAGGAATTTTATGTCAATTGACt < 1:1059173/150‑1 (MQ=255) tAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACt < 2:3648700/150‑1 (MQ=255) tAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACt > 2:2888092/1‑150 (MQ=255) tAAAAGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACt < 1:2422542/150‑1 (MQ=255) aaaaGGGAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACtt < 2:2635306/150‑1 (MQ=255) gAAATCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTAcccc < 2:1052678/150‑1 (MQ=255) aaaTCAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCa > 2:1298671/1‑150 (MQ=255) cAAAGATAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGta < 2:2921425/150‑1 (MQ=255) | AAAATCACTTCACACACTATCAGAGAACATAATAACTTTTTAAAATGAGCGCATTTTGATAGTTGTTAACGATTTCCTTTACGATACTATCACTACCCTTTTTTTACACACAAATATTACCGGGTGGAGATAAAAGGGAAATCAAAGGTAATTATATCAGGAAGATATAACGCATTACATTTATTGTGTGTAGAAGAAAATCCATTCCTGTTCTAATTATCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATA > CP009273/3644384‑3644677 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |