Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,789,229 T→A 12.2% V314E (GTG→GAG)  waaF → ADP‑heptose:LPS heptosyltransferase II

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,789,2290TA12.2% 946.0 / 92.8 342V314E (GTG→GAG) waaFADP‑heptose:LPS heptosyltransferase II
Reads supporting (aligned to +/- strand):  ref base T (144/153);  new base A (18/24);  total (162/180)
Fisher's exact test for biased strand distribution p-value = 5.14e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 343 total aligned reads displayed.

CATTGTCACTAACGATTCTGGCCTGATGCATGTTGCGGCGGCGCTCAATCGTCCGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGCCTGACGGATGCGGGTTTTGATCGTTAAAACATCGTCGATGGGCGA  >  CP009273/3789080‑3789376
                                                                                                                                                     |                                                                                                                                                   
cATTGTCACTAACGATTCTGGCCTGATGCATGTTGCGGCGGCGCTCAATCGTCCGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGt                                                                                                                                                     >  2:4991460/1‑150 (MQ=255)
 aTTGTCACTAACGATTCTGGCCTGATGCATGTTGCGGCGGCGCTCAATCGTCCGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTg                                                                                                                                                    >  1:3106961/1‑150 (MQ=255)
       aCTAACGATTCTGGCCTGATGCATGTTGCGGCGGCGCTCAATCGTCCGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTaaa                                                                                                                                              >  2:3092486/1‑150 (MQ=255)
       aCTAACGATTCTGGCCTGATGCATGTTGCGGCGGCGCTCAATCGTCCGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTaaa                                                                                                                                              >  1:1997369/1‑150 (MQ=255)
        cTAACGATTCTGGCCTGATGCATGTTGCGGCGGCGCTCAATCGTCCGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAg                                                                                                                                             >  1:49539/1‑150 (MQ=255)
        cTAACGATTCTGGCCTGATGCATGTTGCGGCGGCGCTCAATCGTCCGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAg                                                                                                                                             <  2:1241664/150‑1 (MQ=255)
          aaCGATTCTGGCCTGATGCATGTTGCGGCGGCGCTCAATCGTCCGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGAGCGTAAAGGt                                                                                                                                           >  2:1167476/1‑150 (MQ=255)
           aCGATTCTGGCCTGATGCATGTTGCGGCGGCGCTCAATCGTCCGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTg                                                                                                                                          <  2:84305/150‑1 (MQ=255)
              aTTCTGGCCTGATGCATGTTGCGGCGGCGCTCAATCGTCCGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACg                                                                                                                                       >  1:1713813/1‑150 (MQ=255)
                 cTGGCCTGATGCATGTTGCGGCGGCGCTCAATCGTCCGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTg                                                                                                                                    >  1:5093271/1‑150 (MQ=255)
                 cTGGCCTGATGCATGTTGCGGCGGCGCTCAATCGTCCGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTg                                                                                                                                    <  1:2469435/150‑1 (MQ=255)
                  tGGCCTGATGCATGTTGCGGCGGCGCTCAATCGTCCGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGc                                                                                                                                   <  2:151335/150‑1 (MQ=255)
                   ggCCTGATGCATGTTGCGGCGGCGCTCAATCGTCCGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCg                                                                                                                                  <  2:884985/150‑1 (MQ=255)
                   ggCCTGATGCATGTTGCGGCGGCGCTCAATCGTCCGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGAGCGTAAAGGTGACGCTGCg                                                                                                                                  <  2:4764824/150‑1 (MQ=255)
                     ccTGATGCATGTTGCGGCGGCGCTCAATCGTCCGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGa                                                                                                                                >  2:1371499/1‑150 (MQ=255)
                     ccTGATGCATGTTGCGGCGGCGCTCAATCGTCCGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGa                                                                                                                                <  2:2462334/150‑1 (MQ=255)
                      cTGATGCATGTTGCGGCGGCGCTCAATCGTCCGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAg                                                                                                                               >  1:2103160/1‑150 (MQ=255)
                      cTGATGCATGTTGCGGCGGCGCTCAATCGTCCGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAg                                                                                                                               >  2:3134/1‑150 (MQ=255)
                       tGATGCATGTTGCGGCGGCGCTCAATCGTCCGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAgg                                                                                                                              >  2:2344920/1‑150 (MQ=255)
                            cATGTTGCGGCGGCGCTCAATCGTCCGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGTTTAt                                                                                                                         <  1:1391117/150‑1 (MQ=255)
                            cATGTTGCGGCGGCGCTCAATCGTCCGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGttct                                                                                                                         >  2:2540087/1‑148 (MQ=255)
                            cATGTTGCGGCGGCGCTCAATCGTCCGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGAGCGTAAAGGTGACGCTGCGGAGGGTTAt                                                                                                                         >  1:4726493/1‑150 (MQ=255)
                             aTGTTGCGGCGGCGCTCAATCGTCCGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATc                                                                                                                        >  1:3615852/1‑150 (MQ=255)
                             aTGTTGCGGCGGCGCTCAATCGTCCGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATc                                                                                                                        >  1:4058302/1‑150 (MQ=255)
                               gTTGCGGCGGCGCTCAATCGTCCGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTCTCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCAc                                                                                                                      >  2:1026788/1‑150 (MQ=255)
                                  gcggcggcgCTCAATCGTCCGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGAGCGTAAAGGTGACGCTGCGGAGGGTTATCACCag                                                                                                                   <  2:675974/150‑1 (MQ=255)
                                    ggcggcgCTCAATCGTCCGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCagag                                                                                                                 <  2:2141589/150‑1 (MQ=255)
                                    ggcggcgCTCAATCGTCCGCTGGTTGCCCTGTATGGTACGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCagag                                                                                                                 >  1:2917418/1‑150 (MQ=255)
                                       ggcgCTCAATCGTCCGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCtt                                                                                                              <  1:1738179/150‑1 (MQ=255)
                                        gcgcTCAATCGTCCGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTa                                                                                                             <  1:4134277/150‑1 (MQ=255)
                                           cTCAATCGTCCGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATc                                                                                                          <  2:370693/150‑1 (MQ=255)
                                             cAATCGTCCGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGa                                                                                                        <  2:1970319/150‑1 (MQ=255)
                                             cAATCGTCCGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGa                                                                                                        <  2:632020/150‑1 (MQ=255)
                                                tCGTCCGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACAt                                                                                                     <  1:2350554/150‑1 (MQ=255)
                                                tCGTCCGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACAt                                                                                                     <  1:1204557/150‑1 (MQ=255)
                                                  gTCCGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTa                                                                                                   >  1:2263968/1‑150 (MQ=255)
                                                   tCCGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGATATCACAACGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTAc                                                                                                  <  1:3433689/150‑1 (MQ=255)
                                                    ccGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACt                                                                                                 <  1:3804186/150‑1 (MQ=255)
                                                     cGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTc                                                                                                <  2:757938/150‑1 (MQ=255)
                                                       cTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACCTTACTccc                                                                                              >  2:2715666/1‑150 (MQ=255)
                                                       cTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTccc                                                                                              >  1:875280/1‑150 (MQ=255)
                                                        tGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCAAAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTcccc                                                                                             <  1:3708049/150‑1 (MQ=255)
                                                         ggTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTGTCACCAGAGCTTAATCGACATTACTCCCCa                                                                                            >  1:3837727/1‑150 (MQ=255)
                                                           ttGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAgc                                                                                          <  1:5139375/150‑1 (MQ=255)
                                                           ttGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAgc                                                                                          <  1:4328216/150‑1 (MQ=255)
                                                                   tATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGAGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTg                                                                                  <  2:5055291/150‑1 (MQ=255)
                                                                      ggTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGTTTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTCATCGACATTACTCCCCAGCGCGTACTGgaa                                                                               >  2:3929887/1‑150 (MQ=255)
                                                                      ggTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGgaa                                                                               <  2:1741746/150‑1 (MQ=255)
                                                                          cGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGAGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAAc                                                                           >  2:4173148/1‑150 (MQ=255)
                                                                           gAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACt                                                                          <  1:5241494/150‑1 (MQ=255)
                                                                               aGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGAGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAAc                                                                      <  1:578951/150‑1 (MQ=255)
                                                                                   cGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGAGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACgcgc                                                                  <  2:2219262/150‑1 (MQ=255)
                                                                                       cTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGAGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTAtt                                                              >  2:3326427/1‑150 (MQ=255)
                                                                                       cTTAACACCGCCTATATCCCATAAAGCGCGGGTTATCCGTTTGATTCCCGGCTATAACAAAGAGCGTAAAGGTGACGTTGCGGAGGTTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTAtt                                                              <  1:4488517/150‑1 (MQ=255)
                                                                                          cacaCCGCCGCTATCCCATAAAGCGCGCGTGATACGATTGATTAACGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGtt                                                           >  2:1104116/1‑150 (MQ=255)
                                                                                           acacCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAACGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTa                                                          <  1:1233730/150‑1 (MQ=255)
                                                                                           acacCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTa                                                          >  2:4813086/1‑150 (MQ=255)
                                                                                               cgccgcTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAag                                                      >  2:3640530/1‑150 (MQ=255)
                                                                                                  cgcTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGAGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAgg                                                   >  1:1935536/1‑150 (MQ=255)
                                                                                                    cTATCCCATAACGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGaa                                                 <  1:1607889/150‑1 (MQ=255)
                                                                                                    cTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGAGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGaa                                                 <  1:737117/150‑1 (MQ=255)
                                                                                                       tCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGcc                                              <  2:4408529/150‑1 (MQ=255)
                                                                                                        cccATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGCCt                                             <  2:1635081/150‑1 (MQ=255)
                                                                                                         ccATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGTGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGCCTg                                            <  2:912646/150‑1 (MQ=255)
                                                                                                         ccATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGCCTg                                            <  2:1680954/150‑1 (MQ=255)
                                                                                                           aTAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGCCTGAc                                          >  2:4510727/1‑150 (MQ=255)
                                                                                                           aTAAAGAGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGTGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGCCTGAc                                          <  1:555085/150‑1 (MQ=255)
                                                                                                            tAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATGGGTACAAGAGGAAGCCTGACg                                         >  1:2669425/1‑150 (MQ=255)
                                                                                                            tAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGAGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGCCTGACg                                         >  2:4019571/1‑150 (MQ=255)
                                                                                                             aaaGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGCCTGACgg                                        >  1:4768745/1‑150 (MQ=255)
                                                                                                              aaGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGCCTGACGGa                                       >  1:2502784/1‑150 (MQ=255)
                                                                                                              aaGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGCCTGACGGa                                       >  2:422284/1‑150 (MQ=255)
                                                                                                               aGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGCCTGACGGAt                                      >  1:329316/1‑150 (MQ=255)
                                                                                                                gcgcgcGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGCCTGACGGATg                                     <  2:520229/150‑1 (MQ=255)
                                                                                                                   cgcgTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGCCTGACGGATGCgg                                  >  1:1509416/1‑150 (MQ=255)
                                                                                                                      gTGATCCGATTTATTCCCGGCTATCACAAATTGCTTAAAGGTGACGCTGCGGAGGGTTATCACCAGATCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGCCTGACGGATGCGGGtt                               <  2:5026514/150‑1 (MQ=255)
                                                                                                                       ttaTCCGTTTTATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGCCTGACGGATGCGGGttt                              <  1:257049/148‑1 (MQ=255)
                                                                                                                        gATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGCCTGACGGATGCGGGtttt                             >  1:1140650/1‑150 (MQ=255)
                                                                                                                         aTCCGTTTGATTACCGGCTATCACAAAGAGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGCCTGACGGATGCGGGTTTTg                            <  2:3351716/150‑1 (MQ=255)
                                                                                                                          tCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGCCTGACGGATGCGGGTTTTGa                           >  2:32096/1‑150 (MQ=255)
                                                                                                                            cGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGCCTGACGGATGCGGGTTTTGATc                         <  1:4381576/150‑1 (MQ=255)
                                                                                                                                tGATTACCGGCTATCACAAAGTGCGTATAGGTGACGCTGCGGTGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGCCTGACGGATGCGGGTTTTGATCGTTa                     <  1:3009227/150‑1 (MQ=255)
                                                                                                                                tGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGCCTGACGGATGCGGGTTTTGATCGTTa                     <  1:2231239/150‑1 (MQ=255)
                                                                                                                                tGATTACCGGCAATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGCCTGACGGATGCGGGTTTTGATCGTTa                     <  1:1888232/150‑1 (MQ=255)
                                                                                                                                  aTTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGCCTGACGGATGCGGGTTTTGATCGTTaaa                   <  1:3517567/150‑1 (MQ=255)
                                                                                                                                  aTTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGCCTGACGGATGCGGGTTTTGATCGTTaaa                   >  1:2416111/1‑150 (MQ=255)
                                                                                                                                  aTTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGCCTGACGGATGCGGGTTTTGATCGTTaaa                   >  2:3566737/1‑150 (MQ=255)
                                                                                                                                      ccGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGCCTGACGGATGCGGGTTTTGATCGTTAAAACAt               <  1:1030439/150‑1 (MQ=255)
                                                                                                                                      ccGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGCCTGACGGATGCGGGTTTTGATCGTTAAAACAt               <  2:287532/150‑1 (MQ=255)
                                                                                                                                      ccGGCTATCACAAAGAGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGCCTGACGGATGCGGGTTTTGATCGTTAAAACAt               >  2:3809435/1‑150 (MQ=255)
                                                                                                                                       cGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGCCTGACGGATGCGGGTTTTGATCGTTAAAACAtc              >  1:4427239/1‑150 (MQ=255)
                                                                                                                                        ggCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGCCTGACGGATGCGGGTTTTGATCGTTAAAACAtcg             <  2:227295/150‑1 (MQ=255)
                                                                                                                                          cTATCACAAAGTGCGTAAAGGTGACGCTGCGGTGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGCCTGACGGATGCGGGTTTTGATCGTTAAAACAtcgtc           <  1:460810/150‑1 (MQ=255)
                                                                                                                                           tATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGCCTGACGGATGCGGGTTTTGATCGTTAAAACAtcgtcg          >  2:3858051/1‑150 (MQ=255)
                                                                                                                                            aTCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGCCTGACGGATGCGGGTTTTGATCGTTAAAACATCGTCGa         >  2:136098/1‑150 (MQ=255)
                                                                                                                                               acaAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCATAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGCCTGACGGATGCGGGTTTTGATCGTTAAAACATCGTCGATgg      <  2:4446208/150‑1 (MQ=255)
                                                                                                                                                caAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGCCTGACGGATGCGGGTTTTGATCGTTAAAACATCGTCGATggg     >  2:5316617/1‑150 (MQ=255)
                                                                                                                                                caAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGCCTGACGGATGCGGGTTTTGATCGTTAAAACATCGTCGATggg     <  1:1283494/150‑1 (MQ=255)
                                                                                                                                                 aanGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGCCTGACGGATGCGGGTTTTGATCGTTAAAACATCGTCGATGGGc    >  1:1181291/1‑150 (MQ=255)
                                                                                                                                                  aaGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGCCTGACGGATGCGGGTTTTGATCGTTAAAACATCGTCGATGGGCg   >  2:1883589/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                   
CATTGTCACTAACGATTCTGGCCTGATGCATGTTGCGGCGGCGCTCAATCGTCCGCTGGTTGCCCTGTATGGTCCGAGTAGCCCGGACTTCACACCGCCGCTATCCCATAAAGCGCGCGTGATCCGTTTGATTACCGGCTATCACAAAGTGCGTAAAGGTGACGCTGCGGAGGGTTATCACCAGAGCTTAATCGACATTACTCCCCAGCGCGTACTGGAAGAACTCAACGCGCTATTGTTACAAGAGGAAGCCTGACGGATGCGGGTTTTGATCGTTAAAACATCGTCGATGGGCGA  >  CP009273/3789080‑3789376

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: