| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,877,722 | A→T | 7.8% | V9V (GTA→GTT) | rpmH → | 50S ribosomal subunit protein L34 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,877,722 | 0 | A | T | 7.8% | 921.7 / 49.9 | 304 | V9V (GTA→GTT) | rpmH | 50S ribosomal subunit protein L34 |
| Reads supporting (aligned to +/- strand): ref base A (163/117); new base T (10/14); total (173/131) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.35e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.70e-01 | |||||||||||
Only 100 of 307 total aligned reads displayed.
GGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTC > CP009273/3877573‑3877871 | gtgtACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTg > 1:4423536/1‑150 (MQ=255) gtACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGaa < 1:962415/150‑1 (MQ=255) gtACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGaa > 2:381038/1‑150 (MQ=255) tACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAg > 1:1554137/1‑150 (MQ=255) tACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAg > 2:1829209/1‑150 (MQ=255) tACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAg > 2:2740401/1‑150 (MQ=255) aCAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAgc > 2:1763870/1‑150 (MQ=255) aaTCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACACACTTTTCAACCGTCTGTACTGAAGCGCAACCGTtct > 2:1038173/1‑150 (MQ=255) aTCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCCATAAAGCCCTTGAAGTTATTCCAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTtctc > 1:3881485/1‑150 (MQ=255) aTCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTtctc > 2:1224470/1‑150 (MQ=255) aTCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGAGCAACCGTtctc > 2:2464682/1‑150 (MQ=255) ccGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCAc < 1:1725324/150‑1 (MQ=255) cGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTTCTGAAGCGCAACCGTTCTCACg > 2:3284621/1‑150 (MQ=255) cGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACg < 1:657461/150‑1 (MQ=255) ctctTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCtt < 2:5160084/150‑1 (MQ=255) ctctTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCtt < 2:952432/150‑1 (MQ=255) ctTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTcc > 2:4827671/1‑150 (MQ=255) ctTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTcc < 1:1375060/150‑1 (MQ=255) tttAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCg < 1:1646492/150‑1 (MQ=255) ttAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGt < 1:4232475/150‑1 (MQ=255) aaTCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGc > 1:1426741/1‑150 (MQ=255) aTCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAATTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCTCAACCGTTCTCACGGCTTCCGTGCt > 2:3569746/1‑150 (MQ=255) tCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGTGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTc > 1:1296714/1‑150 (MQ=255) tCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTAAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTc > 1:3006340/1‑150 (MQ=255) aTGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATgg < 1:2921332/150‑1 (MQ=255) aTGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATgg > 1:3373684/1‑150 (MQ=255) aTGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATgg > 2:547795/1‑150 (MQ=255) gCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGcta < 2:1136741/150‑1 (MQ=255) ttCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGctact < 2:2202821/150‑1 (MQ=255) ttCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGctact < 2:566034/150‑1 (MQ=255) tCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGctacta > 2:3220761/1‑150 (MQ=255) cGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTaa > 2:403891/1‑150 (MQ=255) ggTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTaaa < 1:3529459/150‑1 (MQ=255) gtgtCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTaaaa > 1:1815594/1‑150 (MQ=255) tgtCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTTCTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTaaaaa < 1:4608325/150‑1 (MQ=255) tgtCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTTCTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTaaaaa < 1:268655/150‑1 (MQ=255) gtCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAAt < 2:4321722/150‑1 (MQ=255) gtCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAAt < 1:2165525/150‑1 (MQ=255) ccATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATgg < 2:3939185/150‑1 (MQ=255) gTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGgtcgtc > 2:3407060/1‑150 (MQ=255) aTTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGtt < 1:2751664/150‑1 (MQ=255) tCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGc > 1:3817181/1‑150 (MQ=255) cggcggATATCCAATACAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCa < 1:3924412/150‑1 (MQ=255) cggcggATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCa < 1:4992677/150‑1 (MQ=255) ggcggATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCAc > 2:2845768/1‑150 (MQ=255) gcggATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCAcg > 1:5156701/1‑150 (MQ=255) cggATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCAcgt > 1:3572555/1‑150 (MQ=255) ggATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCAcgtc > 2:282380/1‑150 (MQ=255) tatCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTTCTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCAcgtcgtc < 2:1678779/150‑1 (MQ=255) tatCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCAcgtcgtc > 2:4270872/1‑150 (MQ=255) atCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCAcgtcgtcg > 1:3022953/1‑150 (MQ=255) atCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCAcgtcgtcg > 2:3445344/1‑150 (MQ=255) atCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCAcgtcgtcg > 2:4237474/1‑150 (MQ=255) tCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCAcgtcgtcgt < 1:5205511/150‑1 (MQ=255) ccAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTg > 1:4024528/1‑150 (MQ=255) aaTAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCt > 1:1455366/1‑150 (MQ=255) aaTAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCt > 1:4810549/1‑150 (MQ=255) aaaGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTaaa > 1:2259559/1‑150 (MQ=255) aaGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTTCTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAg < 2:1960872/150‑1 (MQ=255) ccATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGATCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTCAAGGcc > 2:3066635/1‑150 (MQ=255) cATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCcg > 1:3088272/1‑150 (MQ=255) aTTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCcgc > 1:2366679/1‑150 (MQ=255) aaTTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTc < 1:5272922/150‑1 (MQ=255) aaTTGATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCCACCGTCTGTACTGAAGCGCAACCGGTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTc < 1:1048200/150‑1 (MQ=255) aTTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCg > 1:1491960/1‑150 (MQ=255) aTTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCg > 2:4716927/1‑150 (MQ=255) tATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCt < 2:536425/150‑1 (MQ=255) ttCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGa < 2:73026/150‑1 (MQ=255) cAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTTCTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGAcc < 1:1997942/150‑1 (MQ=255) cAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGAcc > 2:1652124/1‑150 (MQ=255) aGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGt > 1:3754408/1‑150 (MQ=255) gTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGtt < 1:2034768/150‑1 (MQ=255) gTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGtt > 1:5113118/1‑150 (MQ=255) ttAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTc < 2:3758808/150‑1 (MQ=255) tAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGt < 1:1860775/150‑1 (MQ=255) aGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGta > 1:2873891/1‑150 (MQ=255) aGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGta < 1:2582574/150‑1 (MQ=255) aaTCGCCTTGAAACGCTCTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCTCGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGtatta < 1:4454291/150‑1 (MQ=255) tCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATaaa > 2:4463748/1‑150 (MQ=255) cGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAg < 2:2943899/150‑1 (MQ=255) gCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGc > 2:4170037/1‑150 (MQ=255) ccATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCt > 1:2475711/1‑150 (MQ=255) gAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAAcc < 1:25950/150‑1 (MQ=255) gAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAAcc < 2:2676467/150‑1 (MQ=255) gCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGa > 1:2720642/1‑150 (MQ=255) cACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAg > 1:2644667/1‑150 (MQ=255) cACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAg < 2:1554137/150‑1 (MQ=255) aCTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGt > 2:2071877/1‑150 (MQ=255) cTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCTCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTg < 1:3689117/150‑1 (MQ=255) cTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTg > 2:4360665/1‑150 (MQ=255) tCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTa > 2:1961588/1‑150 (MQ=255) aaCCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAg > 1:4918383/1‑150 (MQ=255) aCCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGGTCAGc > 1:3983962/1‑150 (MQ=255) ccGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGTCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCt > 1:982870/1‑150 (MQ=255) cGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTc > 1:541442/1‑150 (MQ=255) cGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTc < 2:891335/150‑1 (MQ=255) tGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCAt > 2:5133742/1‑150 (MQ=255) tGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCAt > 2:688427/1‑150 (MQ=255) gTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCAtt < 1:7956/150‑1 (MQ=255) aCTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTc < 1:3244720/150‑1 (MQ=255) | GGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCATGAAACGCACTTTTCAACCGTCTGTACTGAAGCGCAACCGTTCTCACGGCTTCCGTGCTCGTATGGCTACTAAAAATGGTCGTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTC > CP009273/3877573‑3877871 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |