| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,190,061 | T→A | 68.4% | intergenic (+39/‑148) | yjaG → / → hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,190,061 | 0 | T | A | 68.4% | 439.8 / 286.3 | 313 | intergenic (+39/‑148) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit |
| Reads supporting (aligned to +/- strand): ref base T (39/60); new base A (110/104); total (149/164) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.22e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 317 total aligned reads displayed.
TTCCGACTTTTAGCTGAGTGCGAAGAACGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTAT > CP009273/4189912‑4190210 | gACTTTTAGCTGAGTGCGAAGAACGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAg > 1:3886065/1‑150 (MQ=255) aCTTTTAGCTGAGTGCGAAGAACGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGt < 1:224486/150‑1 (MQ=255) cTTTTAGCTGAGTGCGAAGAACGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTc > 2:5159460/1‑150 (MQ=255) tttAGCTGAGTGCGAAGAACGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCtt < 2:2324066/150‑1 (MQ=255) tAGCTGAGTGCGAAGAACGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTcc < 2:2782569/150‑1 (MQ=255) aGCTGAGTGCGAAGAACGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTccc > 1:1893537/1‑150 (MQ=255) aGCTGAGTGCGAAGAACGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTccc < 1:4437272/150‑1 (MQ=255) cTGAGTGCGAAGAACGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCtt > 2:2648997/1‑150 (MQ=255) gagaGCGAAGAACGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTc < 2:4214861/150‑1 (MQ=255) gaagaaCGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑ccccc > 2:948677/1‑150 (MQ=255) aCGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCG‑CCCCCCGTCt < 2:3601791/150‑1 (MQ=255) cgcgATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCG‑CCCCCCGTCTg < 1:3791814/150‑1 (MQ=255) gcgATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTgg < 1:2167939/150‑1 (MQ=255) gcgATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTgg > 2:342529/1‑150 (MQ=255) cgATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGt > 2:3546720/1‑150 (MQ=255) gATATCGAGCTGCTAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTc < 2:1838913/150‑1 (MQ=255) atatCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCt < 2:4428652/150‑1 (MQ=255) atatCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCt < 2:3133421/150‑1 (MQ=255) atatCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCt > 2:2597774/1‑150 (MQ=255) tatCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTa > 1:249628/1‑150 (MQ=255) tCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACa < 1:3663292/150‑1 (MQ=255) cGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACAt < 1:5031187/150‑1 (MQ=255) aGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACAttt < 1:4396138/150‑1 (MQ=255) aGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACAttt < 1:4320130/150‑1 (MQ=255) gATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTgggg > 1:3518372/1‑150 (MQ=255) aTAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAAAAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTggggg < 1:1426120/150‑1 (MQ=255) tAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTgggggg > 2:2380385/1‑150 (MQ=255) aaaaGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGc < 2:5144141/150‑1 (MQ=255) aaaGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCg > 1:2324307/1‑150 (MQ=255) aGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGaa > 2:4994997/1‑150 (MQ=255) aGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGaa > 1:3400062/1‑150 (MQ=255) cTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGaaaaaa > 2:1185510/1‑150 (MQ=255) cTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGaaaaaa > 2:661832/1‑150 (MQ=255) aGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGt < 2:316520/150‑1 (MQ=255) aGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGt > 2:4840590/1‑150 (MQ=255) cAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCt < 1:3193529/150‑1 (MQ=255) cAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCt < 2:1377326/150‑1 (MQ=255) gCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTg < 1:1331762/150‑1 (MQ=255) tGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgt > 2:4299448/1‑150 (MQ=255) gAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtg < 2:2889984/150‑1 (MQ=255) gAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACAGTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtg > 2:3699452/1‑150 (MQ=255) aGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt < 1:1945079/150‑1 (MQ=255) aGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt < 2:1328048/150‑1 (MQ=255) cGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATg < 1:1806040/150‑1 (MQ=255) cGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATg > 2:2110773/1‑150 (MQ=255) ggTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCa > 2:3225036/1‑150 (MQ=255) ggTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCa > 1:4833597/1‑150 (MQ=255) tGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAgg > 2:2039635/1‑150 (MQ=255) gaggGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGga > 1:1173579/1‑150 (MQ=255) gagaGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGga > 1:4610626/1‑150 (MQ=255) agCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCG‑AAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGt > 1:1074251/1‑150 (MQ=255) agCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGagag > 1:2953565/1‑150 (MQ=255) agCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGagag > 1:3248343/1‑150 (MQ=255) gCAATATTTGTATAATTTTTCAGCAATAAGACCAGAAAACTTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGt < 1:2700345/150‑1 (MQ=255) gCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGt < 1:2076898/150‑1 (MQ=255) gCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGt < 1:3732492/150‑1 (MQ=255) cAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTg > 1:3304221/1‑150 (MQ=255) cAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTg > 1:3152994/1‑150 (MQ=255) atTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTAGCGGTGCGTGTATGCAGGAGAGTGCTa > 2:1006536/1‑150 (MQ=255) ttGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTAtt > 1:3609341/1‑150 (MQ=255) tGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTc < 1:596799/150‑1 (MQ=255) tGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTc > 1:1961535/1‑150 (MQ=255) tGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTc > 2:9364/1‑150 (MQ=255) ggTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCt < 2:692004/150‑1 (MQ=255) ggTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCt > 1:1651172/1‑150 (MQ=255) tataATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTgg > 2:3885149/1‑150 (MQ=255) taATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCa < 1:4746890/150‑1 (MQ=255) aaTTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCAt > 1:457116/1‑150 (MQ=255) aaTTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCAt > 1:2299762/1‑150 (MQ=255) aaTAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAc > 2:1150609/1‑150 (MQ=255) aTAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACt > 1:3223401/1‑150 (MQ=255) aTAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACt > 2:5052461/1‑150 (MQ=255) tAAGACCAGAAAACGTGAATTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTc < 1:1525877/150‑1 (MQ=255) gACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAt < 2:3155386/150‑1 (MQ=255) aCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATg < 2:1900039/150‑1 (MQ=255) cAGAAAACGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACAGTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCt > 1:4577866/1‑150 (MQ=255) aaaaCGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAg > 2:3999888/1‑150 (MQ=255) aaaaCGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAg > 2:4181127/1‑150 (MQ=255) aaaCGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGc < 1:3253302/150‑1 (MQ=255) aaCGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCa < 1:288044/150‑1 (MQ=255) cGTGATTTAACGCCTTATTTGTCGTACCTGGATTCTTCCCTTTCG‑CCCCCCGTATGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAg < 1:690240/150‑1 (MQ=255) cGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAg < 1:5159460/150‑1 (MQ=255) cGTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAg < 1:875510/150‑1 (MQ=255) cGTGATTTAACGCCTGATTTGTCGGACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAg < 2:3244350/150‑1 (MQ=255) gTGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGc > 1:2622077/1‑150 (MQ=255) tGATTTAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCg > 1:3358302/1‑150 (MQ=255) ttAACGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATaa < 2:1451789/150‑1 (MQ=255) aCGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAaca < 2:5082529/150‑1 (MQ=255) cGCCTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAacac < 2:2179099/150‑1 (MQ=255) ccTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACAt < 1:2787427/150‑1 (MQ=255) ccTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACAt > 2:2544649/1‑150 (MQ=255) ccTGATTTGTCGGACCTGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATGTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTAGTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACAt < 2:4608381/150‑1 (MQ=255) cTGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACAtt > 2:57107/1‑150 (MQ=255) tGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAATAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTg < 2:294247/150‑1 (MQ=255) tGATTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTg < 1:136865/150‑1 (MQ=255) aTTTGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTa > 1:2438415/1‑150 (MQ=255) ttGTCGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTTCATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAg < 2:82098/150‑1 (MQ=255) cGTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATa < 1:3984888/150‑1 (MQ=255) gTACCAGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATaa > 2:1563092/1‑150 (MQ=255) tACCTGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAAc < 1:1013051/150‑1 (MQ=255) | TTCCGACTTTTAGCTGAGTGCGAAGAACGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTAT > CP009273/4189912‑4190210 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |