| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,382,218 | C→A | 100% | noncoding (42/76 nt) | glyV → | tRNA‑Gly |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,382,218 | 0 | C | A | 95.5% | 588.4 / 14.0 | 213 | noncoding (42/76 nt) | glyV | tRNA‑Gly |
| Reads supporting (aligned to +/- strand): ref base C (6/5); new base A (71/131); total (77/136) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.10e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 213 total aligned reads displayed.
AAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCC > CP009273/4382071‑4382363 | aaaaaaaaCTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAgg < 2:4752478/150‑1 (MQ=255)aaaaaaaaCTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAgg > 2:4647035/1‑150 (MQ=255) aaaaaaaCTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAggg < 1:3866213/150‑1 (MQ=255) aaaaaCTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGt < 1:4706/150‑1 (MQ=255) aaaaaCTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGt > 2:1685617/1‑150 (MQ=255) aaaaCTTTTTTGGGTGGTTGCAGAGGGAAAGATTTCTCGTATAATGCGACTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTAATCGGGAATAGCTCAGTTGGTATAGCACGACCTTGACAAGGTCGGGGTc > 2:4404300/1‑150 (MQ=38) aaaaCTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTc < 1:165647/150‑1 (MQ=255) aaaaCTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTc < 2:1652249/150‑1 (MQ=255) aaaaCTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTc < 2:1765564/150‑1 (MQ=255) aaaCTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGAATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTcg > 1:3548017/1‑150 (MQ=255) cTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGCGCCACCCGAAACGACGCAGAAATCCGAAAATTACGAAAGCAAAAATAAGTAGAACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAATGTAGGGGTCGCGa > 1:2805137/1‑150 (MQ=38) ttttGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGtt > 1:2639336/1‑150 (MQ=255) ttttGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGtt < 1:252952/150‑1 (MQ=255) tttGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTc < 1:3972571/150‑1 (MQ=255) ttGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCg < 1:851872/150‑1 (MQ=255) ggTTGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGtctc < 2:5109828/150‑1 (MQ=255) gTTGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCg < 1:3247583/150‑1 (MQ=255) tGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGtt < 2:3400180/150‑1 (MQ=255) cAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTc > 2:2573762/1‑150 (MQ=255) agagGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTcc < 2:2359016/150‑1 (MQ=255) gagGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTccc < 1:901733/150‑1 (MQ=255) gAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTc > 1:4646546/1‑150 (MQ=255) aaGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCa < 2:1584768/150‑1 (MQ=255) gATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTCGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCaaa > 1:2572282/1‑150 (MQ=255) tttCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAt < 2:3606921/150‑1 (MQ=255) tttCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAt < 2:1228744/150‑1 (MQ=255) ttCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAtt < 1:2808243/150‑1 (MQ=255) tctcGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAtat > 1:211776/1‑148 (MQ=255) tcGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGa < 1:2084080/150‑1 (MQ=255) cGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGaa < 1:4222539/150‑1 (MQ=255) cGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATGTGaa > 2:1218357/1‑150 (MQ=255) gTATTATGCTCCTCCCGTAACGACTCAGAAATGCGAAAATTTCGTAAGCAAAATGAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGaaa < 2:2916544/150‑1 (MQ=21) gTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCATGCCACGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCCAAAGATGaac > 1:1467369/1‑149 (MQ=25) ataATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTATGAAAAg > 2:4479700/1‑150 (MQ=255) aaTGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAATtg > 1:1080439/1‑150 (MQ=255) aTGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgc > 2:312856/1‑150 (MQ=255) gcCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCa < 2:2637166/150‑1 (MQ=255) gcCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCa < 2:4460063/150‑1 (MQ=255) gcCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCa > 1:3741801/1‑150 (MQ=255) ccTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCaa > 1:3481192/1‑150 (MQ=255) tCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAg < 2:4216854/150‑1 (MQ=255) tCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAg < 2:4216743/150‑1 (MQ=255) ccGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc‑a < 2:2968580/150‑1 (MQ=255) cGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc‑ac < 2:69524/150‑1 (MQ=255) gTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc‑aca < 1:3960510/150‑1 (MQ=255) acgacgCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGac < 1:776079/150‑1 (MQ=255) cgacgCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGacc < 2:1321906/150‑1 (MQ=255) gacgCAGAAATGCGAACATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGacca < 2:1004599/150‑1 (MQ=255) acgCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGaccac > 2:3825260/1‑150 (MQ=255) cgCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGaccacc > 1:1986414/1‑150 (MQ=255) gCAGAAATGCTAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGATCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTACAAAATTTGAAAAGTGCTGCAAAGC‑ACAGACCAccc < 2:5308931/150‑1 (MQ=255) cAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTcgcg < 1:3710254/90‑1 (MQ=255) aGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCaaattct < 1:1260254/120‑5 (MQ=255) gAAATGCGAAAATTACGAAAGCAAAATTAATTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGACCACCCAAg < 1:4382556/150‑1 (MQ=255) cGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGACCACCCAAGCGGGaa < 2:1160662/150‑1 (MQ=255) gAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGACCACCCAAGCGGGAAt < 1:55421/150‑1 (MQ=255) gAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGACCACCCAAGCGGGAAt < 1:4841382/150‑1 (MQ=255) aaaTTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGACCACCCAAGCGGGAATAg < 1:497431/150‑1 (MQ=255) ttACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGACCACCCAAGCGGGAATAGCTc < 2:4030626/150‑1 (MQ=255) gAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGACCACCCAAGCGGGAATAGCTCAGtt < 1:4353510/150‑1 (MQ=255) aaGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGACCACCCAAGCGGGAATAGCTCAGTTgg > 1:1043491/1‑150 (MQ=255) gCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGTGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGACCACCCAAGCGGGAATAGCTCAGTTGGTa < 1:745900/150‑1 (MQ=255) cAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGACCACCCAAGCGGGAATAGCTCAGTTGGTag < 2:1062159/150‑1 (MQ=255) cAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGATG‑AAAGCAACACACACCCCATCCGGGAAAAGCACATTTGGTag > 1:2943140/1‑150 (MQ=14) aaaTTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGtctc > 1:3013774/1‑77 (MQ=255) aaTTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCaaattc > 2:2983669/1‑91 (MQ=255) aaTTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCaaattc < 1:2983669/94‑4 (MQ=255) aTTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGACCACCCAAGCGGGACTAGCTCAGGTGGTCGAGCa > 2:2416984/1‑150 (MQ=255) aTTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCa < 1:3593827/150‑1 (MQ=255) tAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGACCACCCAAGCGGCAAGAGCTCGGGTGGTAGAGCACg > 2:279162/1‑150 (MQ=14) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGtctc > 2:2270992/1‑68 (MQ=255) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGtctc < 1:2270992/68‑1 (MQ=255) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTGTCCCGCTCCAAAATTTGAATAGTGCTGCAAAGC‑ACAGACCCCCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCtt < 2:501288/150‑1 (MQ=255) taCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTTCAAAGC‑ACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGc < 1:236915/150‑1 (MQ=255) cgcgGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGTTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCa < 1:3642887/150‑1 (MQ=255) cgcgGGAAGAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCa < 1:2223835/150‑1 (MQ=255) cgGGATTAGATCAGTTGGTAGAGCTCGACCTTGCCAAGGTAGGGGTCGCTATTTCGTGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTTCAAAGC‑ACAGACCTCCCACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAg < 1:1482287/150‑1 (MQ=14) gggAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGGAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAgg < 2:3374436/150‑1 (MQ=255) ggAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGt < 2:1048267/150‑1 (MQ=255) gAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCATTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTc < 2:5006354/150‑1 (MQ=255) aaTAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCg < 2:2256527/150‑1 (MQ=255) aaTAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCg < 1:5231252/150‑1 (MQ=255) aaTAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGGTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCg < 2:128840/150‑1 (MQ=255) tAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCggg < 1:4570357/150‑1 (MQ=255) cTCAGTTGGTAGAGCACGACCTTGCCACGGTAGGGGTCGAGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTTCAAAGC‑ACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGTGTc < 2:1885548/150‑1 (MQ=14) tCAGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTcg < 1:661773/150‑1 (MQ=255) aGTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAACAGAGCTGCAAAGC‑ACAGACCACCCAATCGGGAATAGCTCGGTTGTTAGAGCACGACCTAGCCAAGGTAGGGGTcgcg > 2:5173587/1‑150 (MQ=11) gTTGGTAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGa < 1:2395046/150‑1 (MQ=255) tAGAGCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCg < 2:1439945/150‑1 (MQ=255) agCACGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGt > 1:2770767/1‑150 (MQ=255) aCGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc < 1:1685617/150‑1 (MQ=255) aCGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc < 1:2573762/150‑1 (MQ=255) aCGACCTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTGTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc < 1:1897574/150‑1 (MQ=255) ccTTGCCAAGGTAGGGGGCGCGTGTTCGCGTCTCGTTTCCCGCTCCCAAATTAGAAAAGTGCTGCAAAGC‑AAAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGttt < 2:2107903/150‑1 (MQ=14) cTTGCCAAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTc > 1:4962671/1‑150 (MQ=255) tGCCTAGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTccc < 2:4489665/150‑1 (MQ=255) tGCCAAGGGAGGGGTCGCGAGTTCGAGTCTCTTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTccc < 2:3548017/150‑1 (MQ=255) ctaGGTAGGGGTCGCGAGTTCGAGACTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGACCACCCCAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCt < 2:537258/148‑1 (MQ=255) aaGGTAGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTc > 1:253468/1‑150 (MQ=255) aGGTAGGGGTCGCGAGTTCGAGTCTCGTGTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTcc < 1:1424702/150‑1 (MQ=255) | AAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC‑ACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCC > CP009273/4382071‑4382363 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |