| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,495,859 | T→G | 100% | D252E (GAT→GAG) | yjhC → | putative oxidoreductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,495,859 | 0 | T | G | 97.9% | 1302.0 / 3.8 | 333 | D252E (GAT→GAG) | yjhC | putative oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base T (2/6); new base G (164/161); total (166/167) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.83e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 335 total aligned reads displayed.
TCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAGGCAATATGACCTCAGAAATGGATGGCGCTATAGCATATGGTCATCCAGGAAA > CP009273/4495712‑4496005 | ccAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATg < 1:1736352/150‑1 (MQ=255) tttGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCAATaa > 1:5243146/1‑150 (MQ=255) ttGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAAGTGAGATGCAAGaaa > 2:2977329/1‑150 (MQ=255) ggCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAAca > 2:1328986/1‑150 (MQ=255) ggCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAAca > 2:5309606/1‑150 (MQ=255) cAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAAcagc < 2:2873176/150‑1 (MQ=255) cAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAAcagc < 1:896540/150‑1 (MQ=255) aaTGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAAcagca > 2:686508/1‑150 (MQ=255) tGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAgg < 2:2216862/150‑1 (MQ=255) tGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAgg < 1:835927/150‑1 (MQ=255) tGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAgg > 1:1905639/1‑150 (MQ=255) tGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAgg > 1:2202302/1‑150 (MQ=255) aGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGTAACTAATGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTc < 2:1093386/150‑1 (MQ=255) gatgatATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCa < 2:1803612/150‑1 (MQ=255) atgatATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCAc > 2:4225009/1‑150 (MQ=255) atgatATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGAAAGAAACAGCAGGGTCAc > 2:3440488/1‑150 (MQ=255) tgatATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACt < 2:764494/150‑1 (MQ=255) tgatATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACt < 1:706574/150‑1 (MQ=255) tgatATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACt > 1:3260238/1‑150 (MQ=255) gatATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACtt > 1:1968012/1‑150 (MQ=255) tatGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAg < 2:367141/150‑1 (MQ=255) tGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGa > 2:3036266/1‑150 (MQ=255) gTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGAt > 2:4901956/1‑150 (MQ=255) ttatttatGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGAtt > 1:4861211/1‑150 (MQ=255) atttatGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATTTCATCATAAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTgg < 1:4113191/150‑1 (MQ=255) tttatGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGc < 2:5024841/150‑1 (MQ=255) tttatGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGc < 2:3733202/150‑1 (MQ=255) ttatGACCTTGTAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCg < 1:1216385/150‑1 (MQ=255) ttatGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCg < 2:137598/150‑1 (MQ=255) tGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTc < 2:1353352/150‑1 (MQ=255) gACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCa > 2:4153843/1‑150 (MQ=255) gACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCa < 1:4021651/150‑1 (MQ=255) ctaggAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGACGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTTAGATGAAAGAAACATCAGGGTCAATTAGGATTGGCGGTCAGAc > 2:4035629/4‑150 (MQ=255) ttGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACa < 1:3751016/150‑1 (MQ=255) tGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACaa > 1:483722/1‑150 (MQ=255) gAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAg > 1:2140351/1‑150 (MQ=255) gAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAg > 2:1489866/1‑150 (MQ=255) aTTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCa < 2:4261101/150‑1 (MQ=255) cccGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCAttt < 2:4785485/150‑1 (MQ=255) gTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCAtttttt < 2:4577325/150‑1 (MQ=255) cAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTgg > 2:745977/1‑150 (MQ=255) gAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTcc > 1:4800990/1‑150 (MQ=255) gAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTcc < 1:2027094/150‑1 (MQ=255) aaaaCTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCa > 1:540195/1‑150 (MQ=255) aGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAac < 1:406419/150‑1 (MQ=255) cTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACaaga < 2:1921126/150‑1 (MQ=255) gagTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACaagaagaa < 2:3255663/150‑1 (MQ=255) tGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAgat < 1:2408660/150‑1 (MQ=255) tGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAgat > 2:4531985/1‑150 (MQ=255) tGGGGGAGTGCATTTAACTGGCAGGAAAATTATGTAATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCTCTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAgat < 1:1643794/150‑1 (MQ=255) gggggAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAgatg < 1:4664011/150‑1 (MQ=255) gggggAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAgatg < 2:3820948/150‑1 (MQ=255) gggggAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAgatg > 2:5160387/1‑150 (MQ=255) ggatttcATTTAACTGTCAGGAACATTATGTCATCATCAATGGAACTAAATTCTATATTAAAATTGATATGCAAGAAACAGCAGGGTCACTTAGTATTTGCGGTCAGACAAAGAATTTTTTGGTCCATGAAACACAAGAAGAAgatgatg < 2:2705587/144‑1 (MQ=255) aGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAAATAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAgatgatgat < 1:5019415/150‑1 (MQ=255) gttaaTTTAACTGGACTGAACATTATGTCATCATCAATGTAACTAAAGGCTATATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGAtc < 1:3575185/146‑1 (MQ=255) gTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGAtc < 2:3957806/150‑1 (MQ=255) gTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGAtc > 2:1661997/1‑150 (MQ=255) gCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGAtcgt < 2:2581932/150‑1 (MQ=255) cATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGAtcgtc > 1:3959941/1‑150 (MQ=255) aaCTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGaaa > 2:782969/1‑150 (MQ=255) aCTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAg < 1:153637/150‑1 (MQ=255) aCTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAg < 2:2318437/150‑1 (MQ=255) gCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAGGCaa < 2:887687/150‑1 (MQ=255) ccGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATAGAGATGCAAGAAACAGCAGGGTAACTTAGTATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAGGCAat > 1:1392655/1‑150 (MQ=255) gAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTGGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAGGCAATATg < 1:1328986/150‑1 (MQ=255) gAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAGGCAATATg > 1:2941286/1‑150 (MQ=255) gAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAGGCAATATg > 1:3156117/1‑150 (MQ=255) gAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAGGCAATATg < 1:4476529/150‑1 (MQ=255) aaCATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAGGCAATATGa > 1:1000370/1‑150 (MQ=255) aTTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAGGCAATATGACCt > 2:1192168/1‑150 (MQ=255) catcatcaATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCA‑TTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAGGCAATATGACCTCAGAAatg > 1:4975164/1‑150 (MQ=255) atcaATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAGGCAATATGACCTCAGAAatgggt > 2:4859437/1‑148 (MQ=255) atcaATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAGGCAATATGACCTCAGAAatggat > 2:4600239/1‑150 (MQ=255) tcaATGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAGGCAATATGACCTCAGAAatggatg < 1:229885/150‑1 (MQ=255) aaTGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAGGCAATATGACCTCAGAAATGGATGgc > 2:3398053/1‑150 (MQ=255) aTGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAGGCAATATGACCTCAGAAATGGATGgcg > 1:4104466/1‑150 (MQ=255) aTGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAGGCAATATGACCTCAGAAATGGATGgcg > 1:4340226/1‑150 (MQ=255) tGGAACTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAGGCAATATGACCTCAGAAATGGATGgcgc > 2:4753105/1‑150 (MQ=255) aaCTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAGGCAATATGACCTCAGAAATGGATGGCGCtat > 1:3367917/1‑150 (MQ=255) aaCTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAGGCAATATGACCTCAGAAATGGATGGCGCtat < 2:4942682/150‑1 (MQ=255) aCTAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAGGCAATATGACCTCAGAAATGGATGGCGCtata > 1:362354/1‑150 (MQ=255) tAAAGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAGGCAATATGACCTCAGAAATGGATGGCGCTATAGc > 2:3231841/1‑150 (MQ=255) aaGGCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAGGCAATATGACCTCAGAAATGGATGGCGCTATAGCat < 1:4531985/150‑1 (MQ=255) ggCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAGGCAATATGACCTCAGAAATGGATGGCGCTATAGCatat < 2:2140351/150‑1 (MQ=255) gCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAGGCAATATGACCTCAGAAATGGATGGCGCTATAGCATATg > 1:246777/1‑150 (MQ=255) gCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAGGCAATATGACCTCAGAAATGGATGGCGCTATAGCATATg < 1:1108388/150‑1 (MQ=255) gCTCTATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAGGCAATATGACCTCAGAAATGGATGGCGCTATAGCATATg < 1:2772091/150‑1 (MQ=255) ctctATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAGGCAATATGACCTCAGAAATGGATGGCGCTATAGCATATgg > 1:4895249/1‑150 (MQ=255) ctctATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAGGCAATATGACCTCAGAAATGGATGGCGCTATAGCATATgg > 1:270858/1‑150 (MQ=255) tctATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAGGCAATATGACCTCAGAAATGGATGGCGCTATAGCATATGGt < 2:2426008/150‑1 (MQ=255) ctATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAGGCAATATGACCTCAGAAATGGATGGCGCTATAGCATATGGTc > 1:2972586/1‑150 (MQ=255) tATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAGGCAATATGACCTCAGAAATGGATGGCGCTATAGCATATGGTCa < 2:2574786/150‑1 (MQ=255) tATTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAGGCAAAATGACCTCAGAAATGGATGGCGCTATAGCATATGGTCa > 2:2784677/1‑150 (MQ=255) aTTAAAATTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAGGCAATATGACCTCAGAAATGGATGGCGCTATAGCATATGGTCAt < 1:2623110/150‑1 (MQ=255) aaTTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAGGCAATATGACCTCAGAAATGGATGGCGCTATAGCATATGGTCATCCAgg > 1:1709976/1‑150 (MQ=255) aaTTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAGGCAATATGACCTCAGAAATGGATGGCGCTATAGCATATGGTCATCCAgg > 1:425085/1‑150 (MQ=255) aTTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAGGCAATATGACCTCAGAAATGGATGGCGCTATAGCATATGGTCATCCAGGa > 2:553578/1‑150 (MQ=255) aTTGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAGGCAATATGACCTCAGAAATGGATGGCGCTATAGCATATGGTCATCCAGGa > 1:3185326/1‑150 (MQ=255) tGAGATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAGGCAATATGACCTCAGAAATGGATGGCGCTATAGCATATGGTCATCCAGGaaa > 1:2886454/1‑150 (MQ=255) | TCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAAACACAAGAAGAAGATGATGATCGTCGGAAAGGCAATATGACCTCAGAAATGGATGGCGCTATAGCATATGGTCATCCAGGAAA > CP009273/4495712‑4496005 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |