| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,564,597 | A→C | 8.2% | pseudogene (862/2937 nt) | yjiV → | pseudogene; conserved hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,564,597 | 0 | A | C | 8.2% | 881.9 / 9.3 | 362 | pseudogene (862/2937 nt) | yjiV | pseudogene; conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (196/124); new base C (3/38); total (199/163) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.36e-11 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 368 total aligned reads displayed.
AAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAATATCGAAGCTGGGGAATGCCAGACCAGGCGAAATTGTCACAAGCACAG > CP009273/4564448‑4564746 | aaGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCa < 1:230817/150‑1 (MQ=255)aaGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCa < 2:4321507/150‑1 (MQ=255) gggCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTg < 1:839833/150‑1 (MQ=255) gggCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTg > 1:2053863/1‑150 (MQ=255) gggCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTg < 1:4082610/150‑1 (MQ=255) ggCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTgg > 1:2842943/1‑150 (MQ=255) gTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCAt > 2:1718741/1‑150 (MQ=255) gTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCAt > 2:4904550/1‑150 (MQ=255) tCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATc < 2:3034273/150‑1 (MQ=255) tCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTAAGCTGGCATc > 1:1252836/1‑150 (MQ=255) cGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCa < 1:4889336/150‑1 (MQ=255) cGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCa > 2:2098053/1‑150 (MQ=255) cGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCa < 2:4751949/150‑1 (MQ=255) cGGACCAGATTCGTGGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCa < 2:2504649/150‑1 (MQ=255) ccAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAgg > 2:4161184/1‑150 (MQ=255) aGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGAc > 1:1124481/1‑150 (MQ=255) gATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACg < 1:3102358/150‑1 (MQ=255) ttCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCa < 2:3729362/150‑1 (MQ=255) cGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTTCGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCaaa > 2:3596804/1‑150 (MQ=255) gTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAAc < 1:2390314/150‑1 (MQ=255) ttGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACg > 1:2527151/1‑150 (MQ=255) ccAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCt < 1:2717195/150‑1 (MQ=255) ccAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCt < 1:4741991/150‑1 (MQ=255) cAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTa > 2:4689105/1‑150 (MQ=255) cAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTa > 2:1809713/1‑150 (MQ=255) aGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTAc < 2:2224696/150‑1 (MQ=255) aGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTAc < 2:1481994/150‑1 (MQ=255) gACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAg < 2:5321430/150‑1 (MQ=255) gACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAg < 2:1964713/150‑1 (MQ=255) gACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAg < 1:4697730/150‑1 (MQ=255) cGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAgcg < 1:3640360/150‑1 (MQ=255) gAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAgcgc > 2:4049209/1‑150 (MQ=255) gAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAgcgc > 2:3252754/1‑150 (MQ=255) gAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACACAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAgcgc > 1:791637/1‑150 (MQ=255) aGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCACAGCAGGCATCAAAGGACGCAAACGGCTACAGCGcc > 1:400646/1‑150 (MQ=255) ggTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTCGTCGAAATTCTCAGCTGGCATCCAAGGACGCAAACGTCTACAGCGCCg > 1:385398/1‑150 (MQ=255) gtcgtcGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGa > 2:2331932/1‑150 (MQ=255) gtcgtcGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGa < 1:650942/150‑1 (MQ=255) cgtcgACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCCGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGaat < 1:3525478/150‑1 (MQ=255) cgtcgACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGaat > 1:4317416/1‑150 (MQ=255) cgtcgACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGaat < 1:5147140/150‑1 (MQ=255) cgtcgACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGaat < 1:2914/150‑1 (MQ=255) cgACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTATCAGCTGGCATCAAAGGACGCAAAAGTCTACAGCGCCGaatgcc > 2:555120/1‑150 (MQ=255) cTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTTGTCGAAATTCTCCGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGaatgccaat < 1:1370631/150‑1 (MQ=255) cTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGaatgccaat < 2:3544039/150‑1 (MQ=255) cTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGaatgccaat < 2:5012994/150‑1 (MQ=255) cTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGGAGTCGAAATTATCAGCTGGCATCAAAGGACGCAAAAGTCTACAGCGCCGaatgccaaa > 1:680658/1‑149 (MQ=255) tcatcaCCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGaatgccaatg < 1:1022341/150‑1 (MQ=255) atcaCCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGaatgccaatgcc < 2:72526/150‑1 (MQ=255) cTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCt < 2:926716/150‑1 (MQ=255) tACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTATCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGa > 1:1905161/1‑150 (MQ=255) cagacagTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGaaa > 2:458198/1‑150 (MQ=255) agacagTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGaaaa < 2:124171/150‑1 (MQ=255) acagTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAAt < 1:462624/150‑1 (MQ=255) cagTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAAtt < 2:1600338/150‑1 (MQ=255) cGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCg < 1:769410/150‑1 (MQ=255) gACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCgg > 2:1048216/1‑150 (MQ=255) gACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCgg < 1:1830949/150‑1 (MQ=255) cAAGGGACAGCCCGATGGGCGGTGCGTATGCAGCAAGAAGCATAACGCAGTCGCTTACGCGGAAGAGTTGTCGAAATTCTCCGCTGGCATAAAAGGACGCAAACGTCTACAGCGCCTAATGCCAATGCCGATCTGGAAAAATTAGCGGcc < 1:2166390/150‑1 (MQ=255) aaGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCTAAATTCTCAGCTGGCATAAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCa < 1:3239028/150‑1 (MQ=255) ggACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAggg > 2:1192380/1‑150 (MQ=255) aGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGCAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCGACAGCGCCGAATGCCCATGCCGCTCGGGGAAAATTAGCGGCCCGGGCGaa > 1:4118707/1‑150 (MQ=255) aGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCCGCTGGCATCCAAGGACGCAAACGGCAACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGaa > 2:1088867/1‑150 (MQ=255) gAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGaagcaag < 2:2036442/150‑1 (MQ=255) cGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTg > 1:3918538/1‑150 (MQ=255) tGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAgc > 2:3436905/1‑150 (MQ=255) gCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAgca < 2:4800906/150‑1 (MQ=255) gTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAgcagg > 1:3725590/1‑150 (MQ=255) gcagcaAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCaga > 2:2818929/1‑150 (MQ=255) gcaAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCagaaga < 2:3798171/150‑1 (MQ=255) caAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAACGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAgaagaa < 2:3915119/150‑1 (MQ=255) aagaagCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAat > 2:3183658/1‑150 (MQ=255) gaagCAGAACGCAGTCGATTACGCGTATGCTTAGTCGAAATTCTCAGCTGGCAACAAAGGACGAAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAatat < 1:5090773/150‑1 (MQ=255) cAGAACGCTGTCGATTACGCGGAAGCGTAGTCTAAATTCTCCGCTGGAAACAACGGACGAAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGTAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAATATCGaa < 1:3678894/150‑1 (MQ=255) aGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAATATCGAAg > 2:4334530/1‑150 (MQ=255) aGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTATCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAATATCGAAg > 2:3639329/1‑150 (MQ=255) gCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCCGAATAATATCGAATCTggg > 2:312015/1‑150 (MQ=255) aGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAATATCGAAGCTGGGGa > 2:4460366/1‑150 (MQ=255) aGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAATATCGAAGCTGGGGa > 2:1993098/1‑150 (MQ=255) tCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAATATCGAAGCTGGGGact > 1:4227687/1‑148 (MQ=255) tCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAATATCGAAGCTGGGGAAt > 2:4393250/1‑150 (MQ=255) cGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAATATCGAAGCTGGGGAATg < 2:153470/150‑1 (MQ=255) cTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAATATCGAAGCTGGGGAATGcc > 2:4129425/1‑150 (MQ=255) cTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAAGGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAATATCGAAGCTGGGGAATGcc < 2:614093/150‑1 (MQ=255) tACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAATATCGAAGCTGGGGAATGCCAg < 2:3694711/150‑1 (MQ=255) cgcgTAAGCGTTGTCGAAATTCTCCGCTGGCATCAACGGACGAAAACGTCTACAGCGCCTAATGCAAATGCCTATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAATATCGAAGCTGGGGAATGCCAGAc < 1:1075488/150‑1 (MQ=255) cgcgGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAATATCGAAGCTGGGGAATGCCAGAc > 2:1339003/1‑150 (MQ=255) cgcgGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAATATCGAAGCTGGGGAATGCCAGAc > 1:4508863/1‑150 (MQ=255) ggAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAATATCGAAGCTGGGGAATGCCAGACCAg > 1:2931928/1‑150 (MQ=255) ggAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAATATCGAAGCTGGGGAATGCCAGACCAg > 1:1458419/1‑150 (MQ=255) cGTAGTCGATATTCTCAGCTGTCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAATATCGAAGCTGGGGAATGCCAGACCAGGCGaa < 2:2652164/150‑1 (MQ=255) tAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAATATCGAAGCTGGGGAATGCCAGACCAGGCGAAAt > 2:3064919/1‑150 (MQ=255) tCGAAATTCTCCGCTGGCATCAACGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAATATCGAAGCTGGGGAATGCCAGACCAGGCGAAATTGt < 1:2642064/150‑1 (MQ=255) cGAAATTCTCAGCTGGCATCAAATGACGCAAACGTCTACAGCGCCTAATGCCAATGCCGATCTGTAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAATATCGAAGCTGGGGAATGCCAGACCAGGCGAAATTGTc < 2:2428621/150‑1 (MQ=255) aaaTTCTCCGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAATATCGAAGCTGGGGAATGCCAGACCAGGCGAAATTGTcac < 2:5109335/150‑1 (MQ=255) aaaTTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAATATCGAAGCTGGGGAATGCCAGACCAGGCGAAATTGTcac > 2:2940452/1‑150 (MQ=255) ttCTCCGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAATATCGAAGCTGGGGAATGCCAGACCAGGCGAAATTGTCACAAg < 1:5312742/150‑1 (MQ=255) ttCTCAGCTGGAATCAAAGGACGCAACCGTCTACAGCGCCTATTGCCATTGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAATATCGAAGCTGGGGAATGCCAGACCAGGCGAAATTGTCACAAg < 2:2295461/150‑1 (MQ=255) tctcCGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAATATCGAAGCTGGGGAATGCCAGACCAGGCGAAATTGTCACAAGc < 1:1718741/150‑1 (MQ=255) aGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAATATCGAAGCTGGGGAATGCCAGACCAGGCGAAATTGTCACAAGCACAg > 2:2418505/1‑150 (MQ=255) | AAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAATATCGAAGCTGGGGAATGCCAGACCAGGCGAAATTGTCACAAGCACAG > CP009273/4564448‑4564746 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |