| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 450,333 | A→T | 6.8% | intergenic (+88/‑256) | bolA → / → tig | stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 450,333 | 0 | A | T | 6.8% | 828.1 / 6.4 | 310 | intergenic (+88/‑256) | bolA/tig | stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor) |
| Reads supporting (aligned to +/- strand): ref base A (88/188); new base T (16/3); total (119/191) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.58e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 315 total aligned reads displayed.
AAGGGTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTA > CP009273/450184‑450482 | aaGGGTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTTTCT‑GGa > 1:3976131/1‑150 (MQ=255)aaGGGTAGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCAGT‑TTTTTTTTTTAT‑GGa > 1:3458398/1‑150 (MQ=255) aGGGTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGAt < 2:106322/150‑1 (MQ=255) gCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTTTCT‑GGATTTTgcg > 2:36303/1‑150 (MQ=255) cAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑GTTGTTTTTTGT‑GGTtttttggg > 1:1436675/1‑146 (MQ=255) gACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTTCGCttt > 2:1024884/1‑150 (MQ=255) gACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑GTTGTTTTGTCT‑GGATTTTGCGCttt > 2:451070/1‑150 (MQ=255) cacCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCttttt < 2:37982/150‑1 (MQ=255) acCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTg < 1:2167442/150‑1 (MQ=255) ccGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAACATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGc < 2:334166/150‑1 (MQ=255) cGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCTTAAAAACGAATTTGCAACTGTCGGCGCTTTTACAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGcc < 2:2732383/150‑1 (MQ=255) cGTCTTTGCCTCTCCGCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACGGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCG‑GGATTTTGCGCTTTTTGcc < 2:3189977/150‑1 (MQ=255) gTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGccc < 2:2805064/150‑1 (MQ=255) gTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑GTTGTTTTGTCT‑GGATTTTTCGCTTTTTTccc > 2:5327384/1‑150 (MQ=255) tCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCa < 1:489157/150‑1 (MQ=255) cTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGGGCTTTTTGCCCAg > 1:894034/1‑150 (MQ=255) cTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAg < 2:409923/150‑1 (MQ=255) ttGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTTTGT‑TGTGTTTTGGCTTTTTTCCCAGCa > 1:5178524/1‑150 (MQ=255) ccTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCACCTGTCGGCGCTTTTCCAGTATGTTGATAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTc < 1:4503468/150‑1 (MQ=255) ccTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑GTTGTTTTTTGT‑GGTTTTTGCGCTTTTTGGCCACCCTTc > 1:3435279/1‑150 (MQ=255) ctctCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATTAAAAACGGCCTGCGGGCCGT‑TTTTTTTTGTAT‑GGTTTTTGAGCATTTTGGCCAGCaataa > 1:4002142/1‑146 (MQ=255) ctctCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCa > 2:2918707/1‑150 (MQ=255) ctccCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGa > 2:739306/1‑150 (MQ=255) cTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑GTTGTTTTTTAT‑GGATTTTTAGCTTTTTTGCCCGCAATAAG‑ACAaaaaa > 1:2861520/1‑149 (MQ=255) gTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTg < 2:695167/150‑1 (MQ=255) gTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGccc < 1:665878/150‑1 (MQ=255) ggAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCgg > 2:3430179/1‑150 (MQ=255) aGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑GTTGTTTTGTCT‑GGATTTTGCGCATTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGa > 2:790976/1‑150 (MQ=255) cAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAAt < 2:5083197/150‑1 (MQ=255) aGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAAtt < 2:4765956/150‑1 (MQ=255) aGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑GTTGTTTTGTGT‑GGTTTTTTGGCTTTTTTGCCAGCAATGAG‑TCGGAAATTGGCCggggagt > 2:4467123/1‑146 (MQ=255) ggAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑GTTGTTTTGTGT‑GGGTTTTTCGGTTTTTTCCCAGCAATAAG‑ACGAAAAATTCCCCGGGATtg > 2:4027055/1‑150 (MQ=255) gAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCCGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑GTTGTTTTTTGT‑GGGTTTTGGGGTTTTTTGCCCGCAATAAGAACAAAAATTGCCGGGGGATtg > 1:1004064/1‑150 (MQ=255) aaGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑GTTGGTTTTTGT‑GGGTTTTGGGCTTTTTTGCCAGCAATCAG‑ACGAAAATTTCCCGGGGATtgtg > 1:3924894/1‑150 (MQ=255) aGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAATCGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGa > 2:2641175/1‑150 (MQ=255) aGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑GGTGTTTTGTGT‑GGGTTGTTCGCTTTTTGGCCCGCCTTCAG‑ACGAAAATTGCCCGGGAATtgtgg > 2:206141/1‑149 (MQ=255) gCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGaa < 2:3850716/150‑1 (MQ=255) aTCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGaaaa > 2:3478838/1‑150 (MQ=255) aTCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑GTTGTTTTTTGT‑GGGTTTTGGGCGTTTTTGCCAGCAATGAG‑TCGCAAATTTCCCGGGGAGTGTGtaaa > 1:4240284/1‑150 (MQ=255) cgcgTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑GTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGaaaaaa > 1:409550/1‑150 (MQ=255) tcgTAATAACCCATTTGAAACTGTCGGCGCTTTTCCTGTATGTTGATAAAAATTTTTTGAAAATCGGCCTGCGGGCCGT‑TTTGTATTGTCT‑GGTTTTTGCGCTTTTTGACCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAAt < 1:3184681/149‑1 (MQ=255) gcttAAAAACGAATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGATAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAAt < 1:4107832/147‑1 (MQ=255) gcgTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAAt < 1:1098458/150‑1 (MQ=255) cgTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTGTGGGATTTTGGGTTTTTTG‑CCAGCAATAAG‑AAGAAAAATTGCCGGGGATTGTGTAAAAATa > 1:1227223/1‑150 (MQ=255) gTAAAAACTCATTTGCAACTGTCGGCGATTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATAc < 1:3701605/150‑1 (MQ=255) aaaaCGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATAcgcg < 1:5281834/150‑1 (MQ=255) aaaCGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑GTGTTTTTTTGT‑GGGTTTTTGGGGTTTTGGCCAGCATTCAG‑ACCAAAAATTGCCGGGGATTGTGGAAAAATAagcgc > 1:1183470/1‑149 (MQ=255) aaCGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGAc < 1:3093725/150‑1 (MQ=255) aaCGCATTTGCAACTGTCGGCGCTTGTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGAc < 2:3866452/150‑1 (MQ=255) ttGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑GTTGTTTTGTCT‑GGATTTTGCGCGTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAgcgcgc > 2:1748560/1‑150 (MQ=255) cAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGTGTTTTTTTTTGAG‑GGATTTTGGGTTTTTTGCCCACCATAAAA‑ACAAAAATTG‑CCGGGGATTTTTAAAAAATAAACCACAgggcgccca > 1:569648/1‑147 (MQ=255) tGTCGGCGATTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAAcc < 2:3042074/150‑1 (MQ=255) tttctcTTTTACAGTTTTTTTATAAAAATTTTATGACAAACTGCATGCTGGCCTT‑TTTTTTTTGTCT‑GGATTTTGCGATTTTTGCCCAGAATTCAG‑CCGAAAATTGCCCGGGAATTTTGAAAAAATACGCGACAGCGCGCAATAACCGtt < 1:735132/145‑1 (MQ=255) gcgcTTTTCCAGTTTGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTtct < 1:5126441/150‑1 (MQ=255) gcgcTTTCCCTGTTTGTTGCTAAAAATTTTATGAAACACGGCCTGCGGGCGGT‑TTTGTTTTGTCT‑GGTTTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTtct < 1:1848327/150‑1 (MQ=255) cgcTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTtctc < 1:4456885/150‑1 (MQ=255) cgcTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTtctc < 2:4631672/150‑1 (MQ=255) cgcTTTGCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTtctc < 1:2346/150‑1 (MQ=255) gcTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCg < 2:4071372/150‑1 (MQ=255) gcTTTTCCAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCg < 2:835881/150‑1 (MQ=255) ccAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCAt < 1:2793299/150‑1 (MQ=255) ccAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCAt < 2:4952446/150‑1 (MQ=255) ccAGTATGTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCAt < 2:3207586/150‑1 (MQ=255) gtttatAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTg < 1:1937179/145‑1 (MQ=255) gTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTg < 2:3299393/150‑1 (MQ=255) gTTGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATGGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTg < 1:4353907/150‑1 (MQ=255) ttGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGa < 2:4868779/150‑1 (MQ=255) tGCTAAATATTTTATTAAAACCGGCCTTCGGGCCGT‑TTTGTTTTGTCT‑GTATTTTGCTCTTTTTGCCCATATTTCAG‑ACGAAAATTGCCCGTGAATTGTTAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAATAGTGAt < 1:3404762/150‑1 (MQ=255) tGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGAt < 2:2519498/150‑1 (MQ=255) tGCTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGAt < 1:239558/150‑1 (MQ=255) cTAAAAATTTTTTGAAAAACGGCGGGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGATTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGc < 1:2263224/150‑1 (MQ=255) cTAAAAATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCGTTTTGCCCAGCATTAAG‑ACGAAAATTGCCCGGGAAATGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGCCGCATAAAAGGGATGc > 2:3727989/1‑150 (MQ=255) aaTTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTTTCT‑GGATTTTGCGCTTTTTGGCCAGCATTAAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATAACCGACAGCGCGCAAAAACCCTTCTCGACTCAGAAAAGTGATGCCGCtc > 2:4140036/2‑149 (MQ=255) aaTTTTATGAAAAACGGCCTGCGGGCCGT‑TGTGGTTTTTCT‑GGAGTTTGGGGGTTTTGGCCAGCAATAAG‑ACGAAAATTGGGCGGGCATTGTTTAAAAAAAAGCGACCGCGCGCAAAAAACGGTCTGGACTCATAATATTGGTGgcgcga > 2:2289673/2‑148 (MQ=255) ttATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAAt < 2:1436675/150‑1 (MQ=255) tATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATg < 2:5244307/150‑1 (MQ=255) aTGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGc < 2:1565831/150‑1 (MQ=255) tGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTGTGCGCTTTTTGCCCAGCATTCAG‑CCGAAAATTGCCCGGTAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGcc < 1:5083384/150‑1 (MQ=255) ggCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTa < 1:4583638/150‑1 (MQ=255) ggCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTATCGACTCATAAAAGTGATGCCGCAATAATGCCGCGTccaa > 2:1296958/1‑148 (MQ=255) cGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGaa < 1:3570417/150‑1 (MQ=255) ggCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATg < 1:2003647/150‑1 (MQ=255) ccGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCt > 2:1214841/1‑150 (MQ=255) ccGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCt > 1:2651315/1‑150 (MQ=255) cGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCtt > 2:1842603/1‑150 (MQ=255) gt‑tttgttttGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCttt > 2:1627319/1‑150 (MQ=255) gt‑tttgttttGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCttt > 2:3247034/1‑150 (MQ=255) gt‑tttgttttGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCttt > 2:191009/1‑150 (MQ=255) gt‑tttgttttGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCttt < 1:4649663/150‑1 (MQ=255) t‑tttgttttgTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTc < 1:4023392/150‑1 (MQ=255) tattgttttgtCT‑GGATTTTGCGCATTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTc < 2:3979672/148‑1 (MQ=255) ttttgtCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGgat > 2:4681882/1‑150 (MQ=255) ttttgtCT‑GGATTTTGCGCTTTTTGCCCAGAATTCAG‑ACGAAAATTGCCCTGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGgat < 1:2936516/150‑1 (MQ=255) ttttgtCT‑GGATTGTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGgat < 1:3636484/150‑1 (MQ=255) tttgtCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGgatg < 2:4375331/150‑1 (MQ=255) tgtCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGgatgat < 1:1295870/150‑1 (MQ=255) tCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTc < 2:2447240/150‑1 (MQ=255) cT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCt < 1:1576214/150‑1 (MQ=255) gATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAAAGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGt > 1:883167/1‑150 (MQ=255) aTTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTa < 1:3813205/150‑1 (MQ=255) | AAGGGTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGT‑TTTGTTTTGTCT‑GGATTTTGCGCTTTTTGCCCAGCATTCAG‑ACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTA > CP009273/450184‑450482 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |