| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 681,457 | G→T | 9.4% | N223K (AAC→AAA) | gltJ ← | glutamate, aspartate ABC transporter permease subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 681,457 | 0 | G | T | 9.4% | 950.1 / 20.8 | 303 | N223K (AAC→AAA) | gltJ | glutamate, aspartate ABC transporter permease subunit |
| Reads supporting (aligned to +/- strand): ref base G (183/79); new base T (3/38); total (186/117) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.62e-15 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 310 total aligned reads displayed.
GATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGA > CP009273/681308‑681606 | gATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCg < 2:4363349/150‑1 (MQ=255) aTTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGt > 2:2771610/1‑150 (MQ=255) ttttCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGtt < 1:1112797/150‑1 (MQ=255) ttttCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGtt < 2:2157855/150‑1 (MQ=255) ttttCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGtt < 2:2961257/150‑1 (MQ=255) tttCAGGGTGATCACCAGACCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTa < 1:581656/150‑1 (MQ=255) ttCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTaa > 1:5089483/1‑150 (MQ=255) cAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATc > 1:4568796/1‑150 (MQ=255) aGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCa < 1:2356240/150‑1 (MQ=255) gggTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCaa < 2:4046163/150‑1 (MQ=255) ggTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAac < 1:2624746/150‑1 (MQ=255) tGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAacac < 2:2896289/150‑1 (MQ=255) tGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAacac > 2:2512525/1‑150 (MQ=255) aTCTCCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACAt < 2:3694282/150‑1 (MQ=255) tCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATa > 2:4871504/1‑150 (MQ=255) cACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATAc > 2:4116133/1‑150 (MQ=255) aCCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACg > 1:4983169/1‑150 (MQ=255) aCCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACg > 1:4363141/1‑150 (MQ=255) cAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGcc > 1:1886187/1‑150 (MQ=255) cAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGcc > 1:175817/1‑150 (MQ=255) cAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGcc > 1:4683506/1‑150 (MQ=255) aGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCa > 1:3181590/1‑150 (MQ=255) cccGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGc > 2:789513/1‑150 (MQ=255) tCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTaa < 2:2416023/150‑1 (MQ=255) cGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAAt > 1:810725/1‑150 (MQ=255) cGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAAt < 1:5246218/150‑1 (MQ=255) gAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATg > 2:4144451/1‑150 (MQ=255) gCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGc < 1:4246785/150‑1 (MQ=255) gCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGc < 2:3359186/150‑1 (MQ=255) tatGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCCTGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTaa < 2:1694041/150‑1 (MQ=255) ggCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACg < 2:4725695/150‑1 (MQ=255) agggaagggaCAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACt < 1:1285421/150‑1 (MQ=255) agggaagggaCAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACt < 1:2225263/150‑1 (MQ=255) gggaagggaCAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTc > 1:2176171/1‑150 (MQ=255) aagggaCAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCa > 1:2473433/1‑150 (MQ=255) aCAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCAt > 2:222546/1‑150 (MQ=255) aaTGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATgg > 2:3533048/1‑150 (MQ=255) ggAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCt > 1:3461556/1‑150 (MQ=255) ggAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCt > 2:661576/1‑150 (MQ=255) ggAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCt > 1:3679492/1‑150 (MQ=255) aGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATc > 1:5134805/1‑150 (MQ=255) aaaCTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGc > 1:2867441/1‑150 (MQ=255) cTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCTAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGGGTTAATCAACACCTCCGCCAGGGTATTGGCGTTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAAt < 2:3807961/150‑1 (MQ=255) cttACATTTTTTGCCCCCCTTGTTGCACGGCGGGCTAATTTTACTTGAAACCAGCGAAAACACCAGATTTATAAACGCTTTAAACAACAAATACGCCAGC‑TTATGGGGGTAACACGACTCCCAGGCATGGGCTGAGTAATCGAGCAAttt < 2:1892818/148‑1 (MQ=255) aatttttttGCCCCAAATTTTGCAAGGATGGCTAACTTACCTTAAAACCAGCTTAATCACCAGAATTATAAAAGGTTTAAACAACACATACGCAAGCTTAATGGGGTTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTAcc < 2:1169031/144‑1 (MQ=255) aCATTTTTTCCCCCCCTTGTTGCCAGGCTGGCTAACTTTCGTTTAAACCAGCTAAATCACCAGAATTATAAAAGCTTTAATCAACACAAACCCCCGCTTATTGGGGTTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTAcc < 2:1504009/150‑1 (MQ=255) cATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTAccc > 1:2483053/1‑150 (MQ=255) attattTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCg > 2:1314884/1‑150 (MQ=255) attattTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCg > 2:3995340/1‑150 (MQ=255) ttttGCCCCCATTGGTGCCTGGCCGGCTAACTTTACTTTCAACCCGCGTCAAAACCAGAATGATAAAAGCTTAAATAAACACATCCGCCTGGTTATGGGCGTTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCt < 2:4683400/149‑1 (MQ=255) attTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCt > 1:2266542/1‑150 (MQ=255) attGGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATTAAAAAAGCTTTAATCAACACATACGCCAGCGTATTGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCt < 2:3342152/150‑1 (MQ=255) ccccccATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGACATGGGCTGAGTAATCGAGCAATTTACCCGCCTGcgcc > 1:650450/1‑150 (MQ=255) cccccATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGcgccg > 2:2307091/1‑150 (MQ=255) cccccATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGcgccg > 2:1850732/1‑150 (MQ=255) cccccATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGcgccg > 2:3455458/1‑150 (MQ=255) ccccATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACGTACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGcgccgc > 2:1979117/1‑150 (MQ=255) cctGTTGCCAGGCAGGCTAACTTTACGTTCAACCAGCTTCATCACCAGCATTATAAAAGCGTAAAACAACACATCCGCCAGCGTATTGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCat < 2:5305035/148‑1 (MQ=255) tgtgGCCCGGCAGGCGAAATTTACGTTCAACCAGCGTCATCACCAGCATTATAAAAGCTTTAATCACCACATCCGCCAGCTTAAGGGCGTTAC‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCatat < 2:4274275/150‑1 (MQ=255) tgacaggaaggCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATAAGCCAGCGTAATGGCGGTAA‑ACTACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCTCCGCCATATcaa > 1:4132031/4‑148 (MQ=255) tccctggctggctAATTTTACTTACAACCCGCGTCAACACCAGCTTTATAAAAGCTTTAATCAACACAACCGCCTGCTTACGGGCGTTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATcca < 1:322849/145‑1 (MQ=255) gCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATccac > 1:3442859/1‑150 (MQ=255) ctggcTAACTTTACGTTCAACCCGCGTCAACACCAGATTTATAAAAGCGTTAACCAACACATCCGCCAGCTTATGGGCGGTAC‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGAcc < 1:775444/148‑1 (MQ=255) aggcGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCg > 1:5016318/1‑150 (MQ=255) taaatttACGTTAAACCAGCGTCATCACCCGCATTATAAAAGCGTTAATCAACAAATACGCCTGCGTATTGGCGTTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAg < 1:3022172/146‑1 (MQ=255) aaCTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGt > 1:1544832/1‑150 (MQ=255) aatttACGTCAAACCAGCGTAACCACCACCATGATAAACGCTTAAAACAACACATACGCCAGCTTATTGGCGTTAC‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTc < 1:4260581/148‑1 (MQ=255) cTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCg > 2:4406429/1‑150 (MQ=255) ttACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTAAATCAACACATACGCCAGCGTAATGGCGTTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAg < 2:592785/150‑1 (MQ=255) tACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCTTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAgg > 1:260196/1‑150 (MQ=255) cGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCg > 1:4077093/1‑150 (MQ=255) ttCAACCCGCGACATCACCAGCTTTATAAAAGCTTTAATCAACACATACGCCAGCGTATTGGCGTTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGAt < 2:4568796/150‑1 (MQ=255) tCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATg > 2:161336/1‑150 (MQ=255) cAACCAGCGTCATCACCAGCATTATAAAAGCTTTAATCAACACATCCGCCAGCGTATTGGCGTTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATgg < 2:3649729/150‑1 (MQ=255) aaCCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGc > 1:4838641/1‑150 (MQ=255) aaCCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGc > 2:511882/1‑150 (MQ=255) ccAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCgg > 2:288097/1‑150 (MQ=255) aGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAg > 1:1639137/1‑150 (MQ=255) catcaCCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGttttt > 1:1717525/1‑150 (MQ=255) atcaCCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTc > 1:1596874/1‑150 (MQ=255) tcaCCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCa > 2:2344803/1‑150 (MQ=255) tcaCCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCa > 1:3157133/1‑150 (MQ=255) tcaCCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCa > 1:4911929/1‑150 (MQ=255) caCCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCAc > 1:4616653/1‑150 (MQ=255) caCCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCAc > 2:5043260/1‑150 (MQ=255) aCCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCAcc > 2:3098267/1‑150 (MQ=255) aCCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCAcc > 2:1189947/1‑150 (MQ=255) cATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGtt > 1:4470116/1‑150 (MQ=255) cATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGtt > 1:5157306/1‑150 (MQ=255) aTGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtc > 2:2590805/1‑150 (MQ=255) aTGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTGTCACCAGGTtc > 2:4141083/1‑150 (MQ=255) aTAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGAATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTGTTCACCAGGTtcatc > 2:4833858/1‑150 (MQ=255) tAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcatca > 1:1002719/1‑150 (MQ=255) aaaaGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTcatcat > 1:2711875/1‑150 (MQ=255) caGCTTTAATCACCACAGACGCCAGTTTATTGGGGTTAC‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCAtct < 2:4923744/149‑1 (MQ=255) aaGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCAtct > 1:3511677/1‑150 (MQ=255) cGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTg > 2:3690534/1‑150 (MQ=255) cGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTg > 2:5156075/1‑150 (MQ=255) cGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTg > 1:204118/1‑150 (MQ=255) gTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGa > 1:3305080/1‑150 (MQ=255) | GATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGA > CP009273/681308‑681606 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |